RNA id: XM_039814933.1


Basic Information

Item Value
RNA id XM_039814933.1
length 1759
RNA type mRNA
GC content 0.53
exon number 16
gene id sppl2
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 18480670 ~ 18494488 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGGGCTTGGGTGAGGGGCCGGAGAGCCGAACtcttggttggttggttggttgatgggggaaacaacaacaagctAGGCATCATGAGGGTCCCTGAAACACTGATTTGGACCGCTTTTCTCATCCAGAAGGTGGTGGGAGAGTATGGCATGGCTCATTTCAGTGACAAGGGCAAGAGCAATGGAAAGGATTACTGCATATTCTTTAACTCACAATGGGCACGTCTACCTCAGGACCTCAATAAAGCATCACGTCTTCAGATCTATGACCTGACAACATCGGTCCTGTGCTCGCCCTCCGACGTCCCGGAGGGAGGCTTCCCAAATCGCATCCCCATGGTGATGAGAGGCAACTGCACTTTCTATGAAAAGGTCCGACTGGCCCAGATTAACGGCGCCAAGGGCCTTCTCATCGTCAGCAAGGACAGACTGACACCACCAGCAGGAAACAAGACTCAGTATGAGGAGATTGACATTCCTGTAGCACTGCTCAGCTACTCTGATATGCTGGACATAGGCAAGACCTTTGGTAAAGGAAGACTGGTCGCCATGTACGCACCCAATGAGCCAGTGTTGGACTACAACATGGTGATCATCTTTTTGATGGCAGTAGGAACTGTTGCCATTGGAGGTTACTGGGCTGGCAGCAGAGACAGCAAGAAACGCTACATGAAGCACAAGCGGGACGACGGTGCGGAGAAGCAGGACGAGGAGACCGTAGACGTCACCCCCATCATGACCTGTGTGTTCGTGGTCATGTGCTGCAGCATGCTGGTGCTACTCTACTTCTTCTATGATAGTCTGGCCATTTGGGTCATAGCCATCTTCTGTGTGGCCTCCTCTGTCGGCCTCTACAGCTGTCTCTGGCCGTTTGTCAGGAGACTCCCTTTCTGCAAGTGGAGGGTCCCAGAGAACAACTTGCCATACCTGCACAAACGGCCGCAGATCCGCATGTTGCTGCTGTCGGCCCTCTGCATTGGTGTCAGCATCACCTGGATGGTGTTTCGCAATGAAGACCAGTGGGCGTGGGTGTTACAGGACGCCCTGGGGATCGCCTTCTGTCTCTACATGCTCAAAACAGTCAGACTCCCCACATTTAAGGCTTGCACCTTATTACTGTCGGTCCTTTTTGTCTATGatgttttctttgtatttattaCACCCTTCTTTACAAAGAGTGGGGAAAGTATAATGGTGGAGGTAGCGGCTGGTCCCTCTGACTCCTCCATGCATGAAAAGCTTCCAATGGTGCTCAAAGTGCCAAGGTTaaactcctctcctctggcTCTTTGTGACCGGCCCTTCTCTCTCCTGGGCTTTGGTGATATCTTAGTACCAGGTCTGCTGGTGGCGTACTGTCACAGGTTTGACATTTTAACACAATCCTCCAGGATCTACTTTGTGGCCTGTACGATCGCTTACGGCATCGGCCTGCTGATCACCTTCGTGGCCCTGGCCTTCATGCAGATGGGTCAGCCGGCCTTGCTCTACCTGGTGCCTTGCACTCTGCTCACCAGTCTCACTGTAGCACTGTGGCGCAGGGAGTTGCCCCAGTTCTGGACTGGAAGTGGATTTGTGTGTGCTGCTGAGGGCTCAGCTGTCTGTGAATGTCACTGCAGCCTCCCATAGTGCTATCACCAATCAACTGTACACAAACTGCAGCGCCGCAGACAGAGGATCACTTGACTAAACCGGAGCCGCAAACCACAGAAGAAGACTCACCCCACTTCCCGCCTCAGGAAACGCCCCCAGCtgagaaag

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0050819 negative regulation of coagulation biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004190 aspartic-type endopeptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156134 lncRNA downstream 27138 18454033 ~ 18456002 (-) True G115782
TU156082 lncRNA downstream 97181 18378400 ~ 18385959 (-) True G115738
TU156057 lncRNA downstream 187352 18295562 ~ 18295788 (-) True G115722
XR_005640696.1 lncRNA downstream 197085 18270334 ~ 18286055 (-) True LOC120568297
TU156041 lncRNA downstream 222856 18259924 ~ 18260284 (-) True G115710
XR_005640793.1 lncRNA upstream 40159 18534647 ~ 18535613 (-) True LOC120568822
TU156215 lncRNA upstream 120313 18614801 ~ 18615272 (-) True G115848
TU156218 lncRNA upstream 126345 18620833 ~ 18621220 (-) True G115851
XR_005640750.1 lncRNA upstream 168353 18662841 ~ 18663776 (-) True LOC120568692
TU156242 lncRNA upstream 189118 18683606 ~ 18684244 (-) True G115867
XM_039816978.1 mRNA downstream 176523 18300412 ~ 18306617 (-) False LOC120569106
XM_039816977.1 mRNA downstream 176523 18300412 ~ 18306617 (-) True LOC120569106
XM_039815702.1 mRNA downstream 238882 18236790 ~ 18244258 (-) True LOC120568294
XM_039815691.1 mRNA downstream 307814 18171649 ~ 18175326 (-) True LOC120568289
XM_039815685.1 mRNA downstream 312651 18153211 ~ 18170489 (-) False LOC120568287
XM_039817002.1 mRNA upstream 13967 18508455 ~ 18521023 (-) False phc3
XM_039817001.1 mRNA upstream 13967 18508455 ~ 18520064 (-) False phc3
XM_039817004.1 mRNA upstream 13967 18508455 ~ 18520064 (-) False phc3
XM_039817003.1 mRNA upstream 13967 18508455 ~ 18520064 (-) False phc3
XM_039816999.1 mRNA upstream 13967 18508455 ~ 18520064 (-) True phc3
TU155671 other downstream 1374236 17039800 ~ 17108904 (-) False ly97.3
TU155672 other downstream 1438078 17043126 ~ 17045062 (-) True G115406
TU155670 other downstream 1441664 17039800 ~ 17041476 (-) True ly97.3
XR_005640632.1 other downstream 1680876 16756331 ~ 16802264 (-) False epb41l3b
TU155525 other downstream 1843328 16637108 ~ 16639812 (-) True G115312
TU156258 other upstream 222394 18716882 ~ 18718544 (-) True LOC120568909
TU156342 other upstream 350417 18844905 ~ 18846277 (-) True G115941
TU156358 other upstream 437486 18931974 ~ 18935477 (-) True LOC120568972
TU156517 other upstream 727303 19221791 ~ 19222726 (-) True G116084
TU156578 other upstream 970212 19464700 ~ 19465380 (-) True G116138

Expression Profile