RNA id: XM_039814939.1


Basic Information

Item Value
RNA id XM_039814939.1
length 3554
RNA type mRNA
GC content 0.44
exon number 15
gene id LOC120567858
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 11055838 ~ 11094619 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAATTTGGCATATAAACGCAAAATGAGCAGCGGTCCCATGCAGCCAGTAGCACACAGAGCCAGCTGAGGAATTCAACAGGTACCTATAGACATTtttgagctctctctctctcttccagcGTGGATGTACCAACTGCCTGCTCTCATTCTGTGTGATGGATGGAATTAAAGGCTCCATGGATTGGAAACCTGTCACTCTGCAATAATCTCAAGGTTTTCTGGCATCTGGAATATCGCACCTTGGAGGTATTTCGATCAATTTGGCAGAACTTAAAGACATCAAAAAGGCTTAATTCAGCTGCAGTATTTCCCCCATCATGAAGAGGTCTCTTCCTTTCCCAGGCTGGGTAAGAGCAGCGAGCTTGTTCCTATGTTTGACTCAGACCGCCCTGGCAATGGTCCTCACCAACTCCACACAACTCGAGTCCATCCTGGACAAATACAGAGAAAAGGATGAGGAGTGGTGGAGGGCCCGGTCGCGAGGGAAGAGGGCCATCAGCGATGGAGACATGCACCTCATCCTGGACTTGCACAACAAGCTACGGGGTCAGGTCTACCCTCCTGCCTCCAACATGGAGTACATGGTATGGGATTATGAGTTAGAGAGGAGTGCAGAGCACTGGGCATATACCTGCCGATGGGAACATGGACCGAGCCATATGTTGACACAAATAGGACAAAACCTTGGAGCGCACTGGGGCAGGGACCGCCCCCCTACCTACCATGTCCAGGCCTGGTATGATGAGGTGAGGGACTACAGCTATCCCTACTCCCAGGAGTGTAACCCACACTGCCCATTCAGATGTTCAGGACCTGTTTGTACTCACTACACTCAGttGGTGTGGGCGACTAGCAATCGTATTGGCTGTGCCATCAATGTGTGTTACAACATGAACGTTTGGGGAATGATCTGGGCTAAAGCTGTCTATCTGGTCTGCAACTACTCTCCACCGGGCAACTGGTGGGGTCATGCTCCTTACAAATATGGATCTCCCTGTTCTGCCTGTCCCGCTAGCTATGCTGGAGGCTGCAGGGACAATCTCTGCTACAAAGACGGGGGTGTTGACAGGCGTCCCGCTCCTGGGATTGAGGAGACCAACTACATTGAACCTGAAGCAGAACCAGTGAGGGACAGGGAGCCCCAACCCAGGGCCCAGACGCCAAACCCCTCACCCAATGACAACATAGAGAGAAACCAGGTTGTCAGCGCAGAGCAGATGTGTCAACAGGTCGACTGTAAGACTAAGCTGAGAGATCGGTGCAAGGGGACAACCTGTAACAGATATGAGTGTCCACCTGGCTGCCTTGACACGCCGGGAAAAGTAGTTGGGACTGGCTATTATGACATGCAATCCAGCGTGTGTGGAGCTGGGTTACACGCTGGTGTTATTGACAATGACGGGGGATGGCTGGATGTGACCAGACTGGGCAGAAAACAACAATTCACCAAGTCATACAAGAATGGTATTCAGTCAATTGGGAAAAACAGGAGTGCAAATTCCTTCAAAGTAGAGACAGTGCCTGTCAAGGCAGTAACATGTGATACCACCGTTGCACTTTTCTGCCCTTTCAAGAAACCTGTACGACACTGTCCCAGGTTGTATTGTCCCAGGAACTGTCTGCGTGACAGTCAAGCCCGAGTCATTGGGACAAAATACTATTCAGATAAATCCAGTATCTGCCGAGCAGCCATTCATGCTGGAGTGATCCAGAATGAGTCAGGAGGGTACCTCGATGTGATGCCAGTGGACAAAAGGCAGCAGTACAGTGGCAGTTACCAGAATGGCGTCAATTCAGAGagCCTACTGAACCCAACAGGTGGAAAAGCCTTCAGAGTGTTTGCAGTCATCTGAAAAACCACTCTCAAAGGACAGCGTACCGTCAAACAAGGCCATATCACATCCAGCGAACCCAGTCATTATTATCTTACAACATGTAATTACATTCATTCCTTCAGTAAATAATTCAGCTTCTGACACTAAAAGTGTAACATGGCTTTACTCAAGGCTTCCCGTCTATGTTTGGTCATGAGTGAACCAGTGTCCAGTAATTTGTTTGGTGAATGATGATCCTGGATGTCTTCTGCCTTACGGCATTCCGAAATGTCTAGTGCTGACCGTAATAATCACTCCCATGCATCATGCTGACATGATATCATGACTTCATGTTTTTTATCACTTAAAGTTGAATATACACCACCAGATTTAGCACCACTCCAAATGCCTCCCACAATTTCCAAACATGAAGGTTAAAATATAACATCATAGCTTTTACCAAACTAATTTTAGATGTAGTATGCCTCAGCTCCATGTCAACATAAACCAAAATGGGGCAGTCAGATACAGAGTCATAAAATCTGTTCAGACATTTTGTGGGAACAAGATTAGACTACTATTCAGTCAGACCATCCCTGCTGAAATTAACTACCTGGGTATTTGATGTCATCCCACTTACCCAAAACTCCATCTTGTATTTTCCTGTGGAGGACCAAACCAGGCAAATTATTGagtaaaattacaaataaatTGATATAATAACCCATTGGCTATGTCTGGTGATCAGCTCTGGTGGGCAACAGCCAATATCTCTGGGGTTCAGGTGTAGCCAGCGGATATCCAGACAATGGATTTCCAGGCCAAGACTTCTCCTGCTGTGCGCTGGTCATTGTTTACAGTCCGAGTTGAGAGACGTCTCTataaacagatatctgcatTTGAATGCATTTAAATAATGCGTGATTGGTCAATACTACTCAGACTACAAACATGATCACCAATGATTTTAATACCAAAATCTTGCATTCATATGAAGATATCTGTAATAAAGATGTTCAATAtatgctgttatagagatgatATAGCCCCGGTTTGCTAGAGTCATATTTGAAAATTTTCCATGGGGAAGGGTTTAGCGAGCTGTCAATGTCAATTCATGGGGAAACAGCAGCATGTGTGTTGGGAATGACCCATGTGGCTTAATTTCAAACTTTGCTTTTTGAAGATAGAATTATGTCATACTTTTTGTTTAActattaaatataataaatcaGGCCATGCACACAGGAACAATTTAaatgctttttcatttttaagtctGGTTTGGGCCTCCATATATCACTTATTTTCATCACAGTggtaatatatacagtacattatagCAACAATGCAAGCAGTAAAAtacatattgtatatttttgtacATAATGTTGTAAATAATATTGAACACTTTGTTATGAAAAGCTTGCTACTGTTGCCTTTTTCATTAACATTTCTAATACATTGCCAGCCATATGAAGAGCAATATAAGCAATAAGCAGATGCTGAAACAGATTCTGCATGCAAAACATATATATGTCACatcaagcttttatttttataaaggaAAAACAATAATTCTAGTACATTCATATGTTTGTAAATATTGTGTATGTAacaaattgttgtattttatactGCATTTCCCAGCTTTTgtttatagatatatataaatgGACCCTGGCTGGCCAGGAATGTGCATGGCAAAATCACAATAAAAACACTTGGATTAAATtcaaa

Function

GO:

id name namespace
GO:0005576 extracellular region cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153078 lncRNA downstream 143661 10911500 ~ 10912177 (-) True G113553
XR_005640830.1 lncRNA downstream 644508 10410527 ~ 10411330 (-) True LOC120569033
TU153024 lncRNA downstream 677037 10372699 ~ 10378801 (-) False LOC120569031
XR_005640828.1 lncRNA downstream 677066 10377960 ~ 10378772 (-) True LOC120569031
TU152977 lncRNA downstream 1014380 10040723 ~ 10041458 (-) False brinp2
TU153165 lncRNA upstream 46123 11119002 ~ 11123476 (-) True G113627
TU153197 lncRNA upstream 251727 11324606 ~ 11329834 (-) True LOC120568658
XR_005640742.1 lncRNA upstream 251852 11324731 ~ 11329834 (-) False LOC120568658
TU153204 lncRNA upstream 284855 11357734 ~ 11403230 (-) True G113653
TU153207 lncRNA upstream 292492 11365371 ~ 11367604 (-) True G113656
XM_039816429.1 mRNA downstream 12097 11006879 ~ 11043741 (-) True LOC120568748
XM_039814639.1 mRNA downstream 59249 10922568 ~ 10996589 (-) False col15a1b
XM_039816120.1 mRNA upstream 78548 11151427 ~ 11321003 (-) True ctnnd2b
XM_039816130.1 mRNA upstream 78548 11151427 ~ 11286520 (-) False ctnnd2b
XM_039816125.1 mRNA upstream 78548 11151427 ~ 11286520 (-) False ctnnd2b
XM_039816129.1 mRNA upstream 78548 11151427 ~ 11286520 (-) False ctnnd2b
XM_039816122.1 mRNA upstream 78548 11151427 ~ 11286520 (-) False ctnnd2b
unassigned_transcript_557 other downstream 166886 10887089 ~ 10888952 (-) True LOC120567758
TU153067 other downstream 166991 10887007 ~ 10888847 (-) False LOC120567758
TU152848 other downstream 1545357 9507048 ~ 9510481 (-) False LOC120568397
TU152847 other downstream 1560086 9401742 ~ 9495752 (-) False LOC120568397
TU152846 other downstream 1652226 9401742 ~ 9403612 (-) False LOC120568397
TU153382 other upstream 1145183 12218062 ~ 12218267 (-) True G113805
TU153584 other upstream 1528301 12601180 ~ 12602909 (-) False nedd8l
XR_005640810.1 other upstream 1688036 12760915 ~ 12768625 (-) False LOC120568934
TU153973 other upstream 2011682 13084561 ~ 13088563 (-) True G114152
TU154602 other upstream 3540734 14613613 ~ 14615772 (-) False LOC120568687

Expression Profile