RNA id: XM_039814952.1


Basic Information

Item Value
RNA id XM_039814952.1
length 1519
RNA type mRNA
GC content 0.54
exon number 3
gene id shhb
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 7866394 ~ 7870117 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gagagtgagatggACAGTCAGTCAGACGGACCTACAGTAGTGTAGTTATGGCACCTGCACTGCTCCAATTGAAGTGGGAGAGCTAGCGGGATATAAGGCTGCAGGACTGTCCAGGTAGACCAAAAGATGGTCCTGATGAGAGTGATGCTGTCGGCGTCCCTCTGCCTGCTGCTGACGTCCGTCGGCTCGGGCTGCGGACCGGGCAGGGGACACGGGAAGCGCAGGCACCCCAAGAAGCTGACGCCGCTGGCGCTGAAACAGTTCATCCCCAACGTGGCGGAGAAAACCCTGGGGGCCAGCGGCAAGTGCGAAGGCAAGATCACGCGCAACTCGGACAGGTTCAAGGACCTGACTCCCAGCTACAACCCCGATATTATTTTTAAGGATGAGGAAAACACCAACGCGGACCGACTCATGACACAAAGGTGTAAGGACAAGCTGAACTCTTTGGCTATTTCAGTCATGAATCAGTGGCCCGGGGTTAAACTTCGAGTCACGGAGGGCTGGGATGAGGACGGCCATCATTCTGAGGAGTCTCTGCACTATGAGGGCAGGGCGGTGGACATCACCACCTCCGACCGGGACAAGAGCAAGTACGGCATGCTGTCCAGGCTGGCGGTCGAGGCGGGCTTCGACTGGGTATACTATGAGTCCAAAGCCCACATCCACTGCTCTGTGAAAGCAGAAAACTCGGTGGCAGCTAAGTCTGGAGGTTGCTTCCCTGGTTCGTCCATCGTGATCCTGTCAGACGGAAGGACTAAACCACTGAAGGAGCTCCAGTTGGGGGACAAGGTGCTGGCCGCCGACCAACAAGGAAATCTTGTTCCTAGTGACTTTCTAATGTTCATGGACCAGGACCAGCAGATTATGAGAGAGTTCCACGTCCTGGAGACTGAAGAGCCACGCTGCAGACTAACACTGACTGCAGCTCACCTGGTCTTTGTTATGAGCAACAACAACGGCACCAACAGCAGCGACATTAGGGCCGTGTTCTCCAGCAATGTAAAAGTAGGACAGTGGCTTCTTGTTGTTGGGAATGACCGTCCGGACCACCTCATTCCTGCAAGAGTGACAAGAATTCGTGTGGAGAAATATCGAGGGTCTTATGCACCCGTAACATCTCACGGAACCATCATAGTTGACTGGGTTTTGGCATCTTGCTATGCGGTGGTTGAGGATCATGACCTTGCACACTGGGTTTTTGTGCCAGTCCGGCTGTGGCGCTCATTCTTGTCCCTGGTCGGGATGGTGAAAGAGCTCAGCAGTGTGTACCAAACGGAGGGCGTCCACTGGTACCCCGAGCTCCTCTACCATGTGGGAAGTTGGGTTCTGGACAGCAGCTCTTTTCACCCACAAACGGGGCTTTAAATTGACACACGCCCACCTGCCAAATGCAGGTAGAAATGAACTTGGGCGGGTAACATTGTAAAGTTGCTAGCCaatacattcaagccattgccaaatgagttgttacaaagctaattaagactatcagctccacacaactctctctggattt

Function

GO:

id name namespace
GO:0055002 striated muscle cell development biological_process
GO:0007267 cell-cell signaling biological_process
GO:0060956 endocardial cell differentiation biological_process
GO:0006508 proteolysis biological_process
GO:0048663 neuron fate commitment biological_process
GO:0030900 forebrain development biological_process
GO:0048702 embryonic neurocranium morphogenesis biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process
GO:0042063 gliogenesis biological_process
GO:0005886 plasma membrane cellular_component
GO:0005615 extracellular space cellular_component
GO:0008233 peptidase activity molecular_function

KEGG:

id description
K11988 SHH; sonic hedgehog

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152043 lncRNA downstream 8319 7857850 ~ 7858075 (-) True G112779
TU152042 lncRNA downstream 10505 7855672 ~ 7855889 (-) True G112778
TU152025 lncRNA downstream 63842 7802340 ~ 7802552 (-) True G112764
TU151996 lncRNA downstream 132018 7710610 ~ 7734376 (-) True G112738
TU151970 lncRNA downstream 256160 7608900 ~ 7610234 (-) True G112716
TU152151 lncRNA upstream 31463 7901580 ~ 7903761 (-) False G112871
TU152152 lncRNA upstream 31463 7901580 ~ 7903890 (-) True G112871
TU152172 lncRNA upstream 53985 7924102 ~ 7926192 (-) True G112887
TU152162 lncRNA upstream 94322 7964439 ~ 7966305 (-) True G112877
TU152161 lncRNA upstream 97316 7967433 ~ 7969334 (-) True G112876
XM_039816718.1 mRNA downstream 29448 7817747 ~ 7836946 (-) False cnpy1
XM_039816716.1 mRNA downstream 29587 7817747 ~ 7836807 (-) True cnpy1
XM_039816719.1 mRNA downstream 30019 7817747 ~ 7836375 (-) False cnpy1
XM_039816538.1 mRNA downstream 98558 7741684 ~ 7767836 (-) False paxip1
XM_039816537.1 mRNA downstream 98558 7741684 ~ 7767836 (-) True paxip1
XM_039814957.1 mRNA upstream 34088 7904205 ~ 7938777 (-) False asph
XM_039814959.1 mRNA upstream 34088 7904205 ~ 7932255 (-) False asph
XM_039814960.1 mRNA upstream 34088 7904205 ~ 7929938 (-) False asph
XM_039814958.1 mRNA upstream 34088 7904205 ~ 7929938 (-) False asph
XM_039814956.1 mRNA upstream 34088 7904205 ~ 7929938 (-) False asph
unassigned_transcript_534 other downstream 1638610 6227703 ~ 6227784 (-) True trnas-uga_20
unassigned_transcript_533 other downstream 1639648 6226665 ~ 6226746 (-) True trnas-uga_19
unassigned_transcript_532 other downstream 1645297 6221016 ~ 6221097 (-) True trnas-uga_18
unassigned_transcript_531 other downstream 1645860 6220453 ~ 6220534 (-) True trnas-uga_17
unassigned_transcript_530 other downstream 1646440 6219873 ~ 6219954 (-) True trnas-uga_16
unassigned_transcript_537 other upstream 617350 8487467 ~ 8487539 (-) True trnak-uuu_16
TU152428 other upstream 910335 8780452 ~ 8790042 (-) True G113070
unassigned_transcript_538 other upstream 1002317 8872434 ~ 8872505 (-) True trnag-ucc_9
unassigned_transcript_540 other upstream 1003293 8873410 ~ 8873482 (-) True trnak-cuu_1
unassigned_transcript_547 other upstream 1021814 8891931 ~ 8892004 (-) True trnan-guu_6

Expression Profile