RNA id: XM_039814959.1


Basic Information

Item Value
RNA id XM_039814959.1
length 2455
RNA type mRNA
GC content 0.53
exon number 12
gene id asph
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 7904205 ~ 7938777 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCACAGAGAATAGACTGAGCAGAGAAAATTTTCCATTTGTTTAGAAAAGAAGACTGTACTGTGTGTGAATTAGCTGTTGTGGTCCTATAAGAATGAAGTGCATAGAGGAAGAGAGCGATGTCAATAAAGCCCAGTCAGCCAACAAGAATGGGAAGAAGGCAGACTCTGGGTCCAGCAGCGGCAgcttcttcacctggttcattgTCCTGGCCCTGCTGGGTGTCTGGACATCTGTAGCCGTGGTTTACTTTGACCTGGTCGACTATCAGGGAGTCGTTGACAAGGCTAAGGGCTTACAAATTAACCTGTCTGAGGCCTTGCAAGGTAAACTGGTGGCATACGATACAGATGGAGATGGTGATTTTGATGTCGAGGATGCTAAAGTTCTGCTAGGACTGAAAGAGAAGGCTGTTGTCGTCACTTCCCGTAAAGAAGAAGCCGCTGCCCCAGTGGAGACTCCTGTCGCTGAACCTACACCAGAAGcTGTTATTGAGCCTGAGCCTGAACCTGTGGAAGATGTGATTGAAGCTGCTGTAGCAGAGGACACTTCTGCCCCTCCTCCAGAGCCTGAACCTGAGGTAGCAGCTGAGCCTGAGGCGGAGCCAGAACCAGAGCCCgagccagaaccagagccaGAGCCTGAACCCGAGCTCGTGGAGACTCCTGAGGTGATTGAGGAGGATCCAGAGGTGCTGGAGGAGGAGCCTCCTGCTGTGGAAGAGGATGCCCCTGTGGAGGAGGCTGTTCCAGTCGAGGAGGTTGCAGAGATGATGGCAGACCAGTCTGAAGAGGAGGCAGCGACTGAAGAGGAAACTGCAACAGAGcaggctgtggaggaggaggaggaggaggaggaggaggaggctgccGGCGAGGCTGTGGAGGAATTTGTAGCGGAGGTGGAGGCTGCAgtggaggaagatgaggagacTGCGGAGGACGTTTTAGCAGAGGTGGAGGATGCATTGGAGGAAGTCGAGGAGGCTGCCGACGAGGCCGTGGGAGAGCCTGCTGCAgtggaggagacagaggaggctGCTGCTGAAGAGGTGGCATCGGATGCTTTTActgtagaggaagaggaagctgCTCCTACAGAAGAAGCTGTTGAGGAGCCCGCTGAAGAGGAGGCAGCACCTTCAGAAGAAACAGTCGAAGAGGTAGCGCAAGAAGAGGAGGCCGCACCTTCAGAGGAACCTGCTGAAGAGGAGGCCGCACCTTCAGAGGAACCTGCTGAAGAGGAGGCCGCACCTTCAGAGGAACCTGCTGAAGAGGAGGCCGCACCTTCAGAGGAACCTGCTGAAGAGGAGGCAGCTCCAACAGAAGAATCTGTGCAGGAGGATACAGAAGAAGAGGAGGCAGCACCTTCAGAAGAAGCTGTTGAGGAGTTAGTGCAAGAAGAGGAAGCAGCTCCCTCAGAAGAAGCTGAGGAGGAGGCTGCTGAAGAGGAGGAGGCTGTAGAAGAGGAAACCGCTCCTTCAGAAGAGGCAGTGGATGAggctgatgaagaggaggcagcTCCCTCAGAAGAGGCAGTGGAGGAGGCTGTAGAAGAGGAAGCAGCACCTTCAGAAGAAGCTGAGGAGGAAgctgctgaggaggaggaggcagctcCCTCAGAAGAGGCAGTGGAGGAGGTTGCAGAGACGGAGGCTACTCCAGAAGAAGTTGTAGTGGAGGAGCAAACGGTACCAGCAAAGGAGACTGAAGAAGTGGCACACGAAGCGGAGGACGCAGCAGCAGaagcAGCAGAGGAACCGATTGAGGATGAGCCCACAGAAACGTAAAGGCTGCGGCGGTCGTCGTGgtgacggagcagggacccaaCTGACCTTGCATCAGCACCATCTGAGCGTGCTCAGAGCGATGATGCACCCCTCCACCTCCAGAGAAACAACAGTCGTTACGACtacactctctctccccatctGCCCCCTTTCTGTTTTCCCACCTtcctttttcaaattttttcttTTGGTGTAAACGTGAGATGATGGATAACTTCTTTACTAATATGGTACTCTCTGTTTTTACCcttctcgttttttttttcttctttcaatcAGCGTTCTTAAAGCGCCCATTTCCAGTTTAGTTCGGGGTGCTTCAGTTCCGTGTGACTGGCCATGTGAAAGCCGTGTGTGTTCCCCTTACAGCCGGTCTGCTGGCGTCTGGAACGTTAAACCGCTGATGGTCTGGCTTCCTGGAGCTGATTCGGTTTAGTAAACGGAGACCAAAGTTGACAGCCGAGCCGTCGGCGGACAGTTTGAAATCAGTCTGAGTTCGAAGACTCGGACTGCAGATTTTCTCCACTCtgggcctttttttattttattttattttttttaaatccgcTTGACGGAGAGTAACGCAATATAATTTAAATTTAGGTCATTTAAATCCAAGCGAAATGTTATTTTCTGCCCCTCTCAGTTCAGAATTTCGAAGCCCATct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152152 lncRNA downstream 315 7901580 ~ 7903890 (-) True G112871
TU152151 lncRNA downstream 444 7901580 ~ 7903761 (-) False G112871
TU152043 lncRNA downstream 46130 7857850 ~ 7858075 (-) True G112779
TU152042 lncRNA downstream 48316 7855672 ~ 7855889 (-) True G112778
TU152025 lncRNA downstream 101653 7802340 ~ 7802552 (-) True G112764
TU152162 lncRNA upstream 32184 7964439 ~ 7966305 (-) True G112877
TU152161 lncRNA upstream 35178 7967433 ~ 7969334 (-) True G112876
TU152205 lncRNA upstream 111855 8044110 ~ 8045481 (-) True G112902
TU152206 lncRNA upstream 124347 8056602 ~ 8060033 (-) True G112903
TU152192 lncRNA upstream 207195 8139450 ~ 8192584 (-) True G112897
XM_039814952.1 mRNA downstream 34088 7866394 ~ 7870117 (-) True shhb
XM_039816718.1 mRNA downstream 67259 7817747 ~ 7836946 (-) False cnpy1
XM_039816716.1 mRNA downstream 67398 7817747 ~ 7836807 (-) True cnpy1
XM_039816719.1 mRNA downstream 67830 7817747 ~ 7836375 (-) False cnpy1
XM_039816537.1 mRNA downstream 136369 7741684 ~ 7767836 (-) True paxip1
XM_039816546.1 mRNA upstream 19757 7952012 ~ 7961067 (-) True ttpa
XM_039815391.1 mRNA upstream 39694 7971949 ~ 8022906 (-) True LOC120568123
XM_039817008.1 mRNA upstream 130828 8063083 ~ 8067449 (-) True tmem70
XM_039814514.1 mRNA upstream 147041 8079296 ~ 8085926 (-) True LOC120567605
XM_039815670.1 mRNA upstream 171146 8103401 ~ 8136557 (-) True cntnap2b
unassigned_transcript_534 other downstream 1676421 6227703 ~ 6227784 (-) True trnas-uga_20
unassigned_transcript_533 other downstream 1677459 6226665 ~ 6226746 (-) True trnas-uga_19
unassigned_transcript_532 other downstream 1683108 6221016 ~ 6221097 (-) True trnas-uga_18
unassigned_transcript_531 other downstream 1683671 6220453 ~ 6220534 (-) True trnas-uga_17
unassigned_transcript_530 other downstream 1684251 6219873 ~ 6219954 (-) True trnas-uga_16
unassigned_transcript_537 other upstream 555212 8487467 ~ 8487539 (-) True trnak-uuu_16
TU152428 other upstream 848197 8780452 ~ 8790042 (-) True G113070
unassigned_transcript_538 other upstream 940179 8872434 ~ 8872505 (-) True trnag-ucc_9
unassigned_transcript_540 other upstream 941155 8873410 ~ 8873482 (-) True trnak-cuu_1
unassigned_transcript_547 other upstream 959676 8891931 ~ 8892004 (-) True trnan-guu_6

Expression Profile