RNA id: XM_039814966.1


Basic Information

Item Value
RNA id XM_039814966.1
length 2041
RNA type mRNA
GC content 0.46
exon number 1
gene id LOC120567872
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 1433235 ~ 1435275 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCAGGAAGAGAGACTCAGATGAGCGTTGTCACTGAGAACAGAAATGGCGCAGAAAGGACTTCACCTGGACATGGAAAATTTCTCctgttccatctgtctggatctatTGAAGGAGCCGGTGActactccctgtggacacaactactgcatgaactgtattaaaagccactggGATGGAGAGGATCATAagaacatccacagctgtcctcagtGCAGGCAGATgttcacaccgaggcctgtcctgctgaaaaacaccatgttagcagatttagtggaggagctgaagaagactggactccaagctgctcctgctgatcactgctatgctggagctgaagatgtggtCTGTGATTTCTGCACTGGGAGAAAACTGAAAGCACACAAGTCCTGTTTGATGTGTCTGATGTCTTACTGTGATAAACACCTCCAGCCTCATTATGATGTTCCTCAactaaagaaacacaagctggtggagccctccaagaagctccaggagaacaTCTGCTCTCAtcatgatgaggtgatgaagattttctgccgtactgatcagcagcttatctgttatctctgcttaatggatgaacataaaggccacgacacagttccagctgcagcagaaaggactgagaggcagaaaaagcTCAAGGGGAGTCCACTAAAgatccagcagagaatccaggacagagagaaagatgtgaagctgcttcaacagcaggTGGAGGCCATGAATCTCTCTgctgataaagcagtggaggacagcgagaAGATCTTCACTGAGCTAATCCGTCTCatggagaaaagaagctctgatgtgaagcagcaggtcagatcccagcagGAAAGAGAAGTGAGTCGAGTCAAAGAccttcaggagaagctggagcaggagatcactgagctgaagaagctctcacacacagaggatcacaaccAGTTTCTAAATAACTACCCCTCACCgtcaccactcagccaatcagcatccagcATCGATGTCCgtcctctgagctgctttgaggacgtgatagcggccgtgtcagaagtcagagataaactacaggaTGTCCTGAGAGAGAAGTGGACAAACTGctcactgacagggactgaGGTGGACGTTTTAGTGCCACAACCAGAGCCCAAAACCAGAGCTGacttcttaaaatattcacgtgacatcacactggatccaaacactgcaaacacacatctgttattatctgatgggaacaggaaagcaacatATATGAGACAACATCAGCTttattctagtcacccagacagattcactgTATGGcctcaggtcctgagtagagaggGTCTGACTGGACGtggttactgggaggtggagaggagaggggaaggAGTACAtgtagcagtcgcatacaagaatatcagcagagcaggggaggattgtggatttggagaaaatgacaaatcttgggcATTTGATTGTGAGAATAATAGTCATTCATTTTGGTACAACAATGTCCAAACTCCCATCTCAGGTCCTgtgtcctccagagtaggagtgtacctggatcacagtgcaggtattctgtccttctacagcgtctctgaaaccatgactctcctccacagagtccagaccacattcactcagccgctcTATGCGGGACTTTATCTTTATTATGGACACACAGCTGAGTtttgtaaactgaaatagacagaagtcatttaagggttaatCTCTGTGTTTTAACTCTTCAACTTATTcagtctccatgtttgttgctgAGAGCTGATTGGTGTGGCATTTCTTCACTGCACAGAAatcagctgtcagtcaaacattatgggatgtcctttgacatcttgtcattagttgttgtgtaaatgtttgagATTCTTTAGGTGATGCTTCTTCCTGTGTCTGTTTAGCCACGGAGGCTATCACTGCTCATGATGATGTTTGTTGACCTGAACTGAGAATGAAAACTTCTTTGCTCTCTAAATGTTTGattaatatttgtatcgatgtatttgtatgttgttgtttctcTTCCACATCATGGGTCTGAAGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640649.1 lncRNA downstream 59610 1372855 ~ 1373625 (-) True LOC120568021
XR_005640650.1 lncRNA downstream 59610 1372979 ~ 1373625 (-) False LOC120568021
TU149812 lncRNA downstream 79629 1353116 ~ 1353606 (-) False dhx9
TU149810 lncRNA downstream 84933 1346507 ~ 1348302 (-) True G111222
TU149802 lncRNA downstream 118508 1307539 ~ 1314727 (-) False mfn1a
TU149826 lncRNA upstream 35824 1471099 ~ 1508883 (-) True G111235
XR_005640626.1 lncRNA upstream 62487 1497762 ~ 1497967 (-) True LOC120567884
XR_005640627.1 lncRNA upstream 89399 1524674 ~ 1526105 (-) True LOC120567885
TU149836 lncRNA upstream 114506 1549781 ~ 1664043 (-) True G111245
TU149845 lncRNA upstream 211898 1647173 ~ 1660408 (-) True G111254
XM_039815198.1 mRNA downstream 4921 1415156 ~ 1428314 (-) True LOC120568025
XM_039815197.1 mRNA downstream 23707 1394003 ~ 1409528 (-) False LOC120568022
XM_039816052.1 mRNA downstream 42697 1353022 ~ 1390538 (-) True dhx9
XM_039816051.1 mRNA downstream 118390 1296833 ~ 1314845 (-) False mfn1a
XM_039815563.1 mRNA downstream 227694 1203988 ~ 1205541 (-) True sft2d3
XM_039816057.1 mRNA upstream 321346 1756621 ~ 1764145 (-) True LOC120568497
XM_039814972.1 mRNA upstream 906187 2341462 ~ 2405093 (-) False LOC120567903
XM_039816091.1 mRNA upstream 1083576 2518851 ~ 2601477 (-) True lamc1
XM_039816622.1 mRNA upstream 1190563 2625838 ~ 2662765 (-) False smg7
XM_039816623.1 mRNA upstream 1190563 2625838 ~ 2662765 (-) False smg7
TU149817 other downstream 15276 1412956 ~ 1417959 (-) True G111226
TU149785 other downstream 39033 1391808 ~ 1394202 (-) True LOC120568022
TU149819 other downstream 42748 1386128 ~ 1390487 (-) False dhx9
TU149799 other downstream 118508 1307539 ~ 1314727 (-) False mfn1a
unassigned_transcript_493 other upstream 308025 1743300 ~ 1743839 (-) True LOC120567890
unassigned_transcript_494 other upstream 352292 1787567 ~ 1788061 (-) True LOC120567892
unassigned_transcript_495 other upstream 361247 1796522 ~ 1798678 (-) True LOC120568498
unassigned_transcript_496 other upstream 385475 1820750 ~ 1821550 (-) True LOC120567887
unassigned_transcript_497 other upstream 396906 1832181 ~ 1833095 (-) True LOC120568499

Expression Profile