RNA id: XM_039814974.1


Basic Information

Item Value
RNA id XM_039814974.1
length 1569
RNA type mRNA
GC content 0.48
exon number 6
gene id opn7a
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 22496072 ~ 22503579 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTTAATTGGATCAAGCGCTGCATATAAGAGGACGCGGATTTAGGTAATTCAGCACTAATTGGCCGAGATGGAGTCGTTAGATGAAGACATTGCCTTCCACTCCAACATACCTGTGCCACTGGATATAACCGTGGCTGTGGTCTACTCTGTTTTTGGAGTATGTTCACTGTTTGGCAACAGCACCCTGCTGTATGTCTCCTACAAGAAAAAGCACCTCCTGAAACCAGCCGAGTACTTCATCATCAACCTAGCCGTTAGTGACTTgggcctgactctgtccctctaCCCCATGGCCATAACCTCAAGCTTCTACCACAGGTGGCTGTATGGGAAAACAGTGTGCTCCATATACGCTTTTTGTGGCATGTTGTTTGGCCTCTGCAGTCTGACCACTCTAACCTTGCTAAGCATGGTGTGCTTTGTGAAAGTATGTCATCCGCTCTATGGGAACAGGTTTAACTCCCTCCACGGCCGTCTGATCATTGCCTTTGCTTGGGTCTATGCCCTGTTGTTTGCCTGCTCCCCGCTGGCCCACTGGGGGAAATATGGACCAGAGCCTTATGGCACCGCCTGTTGCATTGACTGGCGCCTGTCCAATCAGCACTCTACAGCACGCTCCTACACTTTGGCACTGTTTCTCTTCTGCTACATCATACCATGCTGTATTATTTTAGCATCCTACACGGGAATACTGCTCACAGTGCACGCTTCCCGCAAGACTATGGAGCAGCACGCAATGAGGCAGACACACATAAGCAGCTGCCAGACAATTATTGTTAAGctaaGTGTTGCTGTCTGCATCGGTTTCTTTGCGGCATGGAGTCCATATGCTTTGGTGTCCATGTGGGCTGCCTTTGGACACATTGAGAACATCCCTCCGCTGGCATTTGCCTTGCCCGCCATGTTTGCCAAGTCCTCCACCATCTACAACCCAATCATCTACCTAATGCTGAGGCCGAACGTCCGCAGGGTGGTGCGCAGGGAACTGGCTACTCTATTCCACGCCTGTCTGAAGGGCTGCCTCTGCTCACAGGAGCCAGCTACGTGCTGCTCCAAGCCAGAGATCAGGGTCAGActacgctcaatccacagacaGACCAACCAATTCCCTTCATCCAACTCCTCTGCTCAACCTCCTATGGTAGCATTAAAGGACCACAGCTGTGAGAAGTGCAAGGATGCTTTCAATTGCTTCAGACACTACCCTCGAATGTGCAGCATCACTAACGCTGCTGCCAATGGAGACTCATCTAAGGATCAAGACACTCCAGTTCCCCAAACACATGAGCAGAAGACACAAAGCAAGTGCCACAAGAAGTCTCTGCTGGCCATCATGTGTGCAAAAAGGACTTCAGAAATAGACAACTTCCATATTAATTTAGAGATGGTTCCAGGGCATGCAAAAGTGGCTTGGCCCTAATATTTCACTATATTCACAATGTTTACAGAATACCTCTGCACAGAATTGACAGTTTATGTTCTTTCAGGTGTGGAATTACTTTATTTCTAGAGAGAGGTCTTTAGGTATTATTCATTATGAGTCTAACGCTAAACAACTCAGCTAATCT

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007601 visual perception biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640797.1 lncRNA downstream 290081 22181964 ~ 22205991 (-) True LOC120568857
TU157630 lncRNA downstream 295092 22195324 ~ 22200980 (-) True G116954
TU157587 lncRNA downstream 317538 22178293 ~ 22178534 (-) True G116922
TU157550 lncRNA downstream 493214 21997794 ~ 22002858 (-) True G116893
TU157461 lncRNA downstream 684926 21810862 ~ 21811146 (-) True G116832
TU157760 lncRNA upstream 126317 22629896 ~ 22632268 (-) True G117052
TU157764 lncRNA upstream 167154 22670733 ~ 22674450 (-) True G117055
TU157840 lncRNA upstream 303493 22807072 ~ 22809753 (-) True G117112
TU157848 lncRNA upstream 321794 22825373 ~ 22825583 (-) True G117117
TU157843 lncRNA upstream 329487 22833066 ~ 22834881 (-) True G117114
XM_039816280.1 mRNA downstream 11101 22480588 ~ 22484971 (-) True dusp22b
XM_039816279.1 mRNA downstream 16108 22466809 ~ 22479964 (-) True irf4a
XM_039814728.1 mRNA downstream 58338 22436460 ~ 22437734 (-) True foxq1a
XM_039814630.1 mRNA downstream 61095 22431645 ~ 22434977 (-) True LOC120567665
XM_039817032.1 mRNA downstream 70137 22423693 ~ 22425935 (-) True foxc1a
XM_039814976.1 mRNA upstream 21682 22525261 ~ 22573807 (-) True phlpp1
XM_039815109.1 mRNA upstream 72754 22576333 ~ 22622878 (-) False LOC120567969
XM_039815108.1 mRNA upstream 72754 22576333 ~ 22603544 (-) True LOC120567969
XM_039815110.1 mRNA upstream 72754 22576333 ~ 22600220 (-) False LOC120567969
XM_039816920.1 mRNA upstream 185495 22689074 ~ 22694675 (-) False LOC120569075
TU157659 other downstream 227513 22263123 ~ 22268559 (-) True G116969
TU157655 other downstream 232574 22261998 ~ 22263498 (-) False G116969
TU157096 other downstream 1485503 21008049 ~ 21010569 (-) False higd1a
TU156767 other downstream 2700363 19793834 ~ 19795709 (-) False xcr1b.1
TU156578 other downstream 3030692 19464700 ~ 19465380 (-) True G116138
TU158039 other upstream 926787 23430366 ~ 23430992 (-) True G117259
XR_005640657.1 other upstream 965041 23468620 ~ 23491612 (-) False LOC120568062
unassigned_transcript_560 other upstream 1364373 23867952 ~ 23868025 (-) True trnai-aau_23
unassigned_transcript_562 other upstream 1365576 23869155 ~ 23869226 (-) True trnap-agg_8
XR_005640840.1 other upstream 1516783 24020362 ~ 24020438 (-) True LOC120569137

Expression Profile