RNA id: XM_039814979.1


Basic Information

Item Value
RNA id XM_039814979.1
length 3828
RNA type mRNA
GC content 0.45
exon number 18
gene id dsc2l
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 22827876 ~ 22866501 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCAGTATGTTACAATAGCAACACAACACTGAGCACAGCCCAAAGGTGCTTTCGCCTGGGAGAGTCTGGGTGTGGCAGCCaaggtgtgtctgtgttgacTCACGGCCAGTAGCGACAGACACCGCGGCTCAGGCTCACACTGAAGTCTGCCTGTCCTTTATTCAGAGCACTTGTGCAAGAATCGACTGGTTTCTTCGTCTGACGCCGACACAAATCCATCAACTGTTGGACGATTCACTACTGTCGGTGGAGCTTCCTCCATACGGACATAGTCCATGAAAAGTTTTCAAACATGGCGAACGTTTTAATTTTCAACATTTGCCTGGTGTTGATGTTGTCCCGTGTGGAGTCGTGTTTTATCCCGAAGTCTCTGTACATAATTGTGCCCGACACAATTCCGACTGGACACAAAATCGCAACAGTTGAAGTTGCTGACTGCGACCCCGAATCAATGCACTTAACTTTGGAGGACCGACGTTTTACAATAACGAGTAATCGAGCAATAGTAGCTGTAACGCCTGTATCAGTGGCACCAGGAGGGCGGACATTTTCTGTGTGGGCTCGGGACAACAGTGGACTGGAAAGTGAGATGGTAGTTCACCTTGTCCACAGTGCAATACGGCAAAAAAAGCCCACAGGCTTCCTGAAGCGCTCCAAGAGACGTTGGAGTCCTCCACCCTTCAACATTTTAGAGAATGATGTAGGACCTTTTCCAAAAGAAATTAACAAGATTGTATCGGACTCGGAAGCCAAGCACCAAGTGTACTACACCATCACTGGACCTGGTGTCAATCAGAATCCAGTGGGATTGTTCAGTCTGAACCCTGAAAGTGGAATGTTGATGGTGAACAGGGCAATTGATCGTGAAGCGTTCCCATCATTTACATTAACAACCAGAGTTTTCGACATATTcacaaaaaaggagacagacTTACCTTTGGACATCCAAGTAGTTGTAGATGATGTGAATGACAACGCTCCAACATTCGTAAACCAACTACAATTCACTGTGCCAGAGCAAAGCGTCACAGGGACAGTGGTGGGGAAGGTGAATGCTACAGACAGAGACCTAGCAGGAACCCTCCACACCACGATCAAGTATTTTCTCACAACTGGGTTAGACCTGTTTGCCATCAACTCACAAACGGGTGTCATCACCACAGCAACTAACACCCTGGACAGAGAGGCAAAAGACAAGCATATAGTGACAGTTGTAATCAAAGATATGGAAGGTGCAGTAAATGGCCTTTCAACCACAGGAACTGCAACCATTACTGTGGGAGATATCAACGACAACGTGCCCACTTTCACAAAAACATCCTATGCAGTTGATGTCAAAgaaaatgaaagtgaaaaactCCTCCTCCGAATTCCCGTTGAAGATAAGGATTTATTAAACACACCAAACTGGATTTCGAAATTCGTCATTAGTAAAGGAAATGAAAATGGACATTTCAGAATAGATACTGACCCCAAAACCAACGAAGGGCTTCTGTATGTCTCAAAGCCCTTAGATTATGAGCAGAACAAAAATGTAAAGCTTGAGATTACGGCACGTAATCAAGCTGACCTGAGTGGCACCACGGACCCATTGAGGTCCATCCCTGTGGATGTCAATGTCCTCAATGAAGATGAGGGTCCAGCATTCTCGGCTCCTACTATCCGCTTCACTGTCAAAGAGAACACACCAAACGGCACACTGATAGGAAGTTACATAGCTACGGATCCTGAGACCAAGAGCAGCAACGGCATCACGTATTACAAGCTCACAGACCCAGCCTCCTGGATCAATGTCGACAGAAATAATGGAGAGCTGAGAGTGGCAAACACAATTGACAGAGAGTCACCGTTTGTCCAAAATGGAATTTACAACATCACCATGAAGGCTGTTGATACTAGCTCCAAAACAGGAACAGGAACAGTCATTATTGTGGTGGAGGATGTCAACGACAACATGCCAGTGATCCCCACCCCCGAGATGGTGTTGTGTGAGAAGGAAGGAGAGCTCGGCTCAGTGCTGGTTGTGGCTGAAGACAAAGACCAGAAACCCTTTTCTGACCCCTTCAGCTTTAGTCTGCCACATGGTCATGATGGCAAATGGTCCTTGACAAAAGTTAATGGCACAGCAGCTATGTTGAGGCACATCCAAGAGCTCCCCACAGGGATATACCATGTTCCCATAGACGTTACAGATCTGCAGGGCTTTGGTAAAACACAGACGGCGAAAGTGAGGATCTGCCAGTGCAGGAATGGAGCCTGCTTGGACAAGGACCACTCTGTGTCATTAGGGCCACTGGCTTTACTGGCTATGCTGTTgcctctgctcttcctcctaCTGCTCGGCCTACTGCTTgtaaagaaagacaaagagacaaagagagagaaactagAATTTGAAGATGTAGGAGACAGTGGTGGAATCCTGCTCAAATCAAACACCGAGTCCCCAGGGGAAGAAGTGGATTCAAGCCTCATCACTATTCCCACTACTGGGATTGACCAAGCAGTGAAGGGCTCAGTGAAGGGGGTGAATGCAGGATGGACTGGGAACAAGAGCTTCAGCACAATCGGAGGCCAAAGCACACATGGGAATGGGATGTATGGGGCATCCGGTGTTGTCACATCCGATACGCAAGAGTACTATTCTGGCCAGTATGATAACCAATTTGGTAATCAGTCTGGACATTTTGGTATGGGTAGCGGTACAAACTTTGACAACAGATACCTCGCCCAGGACGCAGCCTTTCTTCACAACTGGCGAACAAACGGCCGCTATATAAACCAGAAGCTGGCCTATTTTGGAACAGAGGATGGACAGTACGCAGATGACCTCATCCACTCCTACGGTTTTGAGGGGGCGGGCTCTGCAGCTGGCTCTGTGGGATGTTGCAGCGACTTTGGTGACAACGATAACCTCGACTTCCTGAACACGCTCGGACCAAAGTTCAAAACTCTAGGAGCTGTCTGCAGAAAGACATGAACAATGAAGCTCAAAAGATATAGACGGGCCTGGGATCTGAATGCTTGGTATTCCCCCTGAACATGAATGAGAAAAAGAACAAGTAGATGGCGTCAGTGTGTGCACACTGCTCTGCTATCACTTTTTGTTGTTAGTttgttttgctgctttttgGTAAATGTATTTTGCACTGAAAACTATGCAGAATGCTTTCAGTTATACATACTTTGTGCCGTGTGTTACTCAGAGGCTTGGTTTCCCATCTATCCATTATTGAATTATATTATTAGCCATACTTGCTTCACATTGTAAAGGAAGGTTGTGGGATTGTTATATTGATCGCTGTATTGAAATATGCAGTGAAgggctgcagttttttttaatctattgtaAGAGTAACAGATTTGGGTATTTTGGTTAATGTTAATAATCTGTGTTCACAGTAAATGATACAATTCTGCATTTTTGCAATTGCTTGCTTAATTTAATAGTTTTGATgacaatttttaaaataaaaataaaacaagtaaATACCTAAATGGTATAAGACAATAATAAAACTGCCTTCTTTAATATTTTACATGAACATACTTAATTTCAAATTGCATGCTTAAAACTTTTACCAGTTTTAAACAATAATGTTGATTGTCTTTCACTGGTTTTCCAAATCATACAGTATTTATCTGTGCAATCACATTCCTCTGCAGCTCTTGACCGTTGATTGGGCGTAGTTTCAGCCCTGTGTGTCACGAGGTTGTTGCAATATACTGCCAGTAATCACATGAAAGTCAACGCGAGGGCGGGAATGTGATGAGTAAGGTATAACTGACACTGCCTGGAACTGTTTGAATACAATACTGACTAGACac

Function

GO:

id name namespace
GO:0002009 morphogenesis of an epithelium biological_process
GO:0007369 gastrulation biological_process
GO:0007155 cell adhesion biological_process
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157795 lncRNA upstream 73386 22752252 ~ 22754490 (+) True G117082
TU157787 lncRNA upstream 80144 22747120 ~ 22747732 (+) True G117077
TU157668 lncRNA upstream 355036 22465335 ~ 22472840 (+) True G116978
XR_005640771.1 lncRNA upstream 512929 22307767 ~ 22314947 (+) True LOC120568744
XR_005640796.1 lncRNA upstream 589371 22235912 ~ 22238505 (+) False LOC120568856
TU157860 lncRNA downstream 51375 22917876 ~ 22918106 (+) True G117128
TU157944 lncRNA downstream 507209 23373710 ~ 23374199 (+) True G117187
TU157950 lncRNA downstream 510632 23377133 ~ 23378516 (+) True G117190
TU157982 lncRNA downstream 573070 23439571 ~ 23440835 (+) False kdsr
TU157984 lncRNA downstream 579850 23446351 ~ 23462300 (+) True G117219
XM_039816768.1 mRNA upstream 15979 22807164 ~ 22811897 (+) True LOC120568988
XM_039816769.1 mRNA upstream 15979 22807165 ~ 22811897 (+) False LOC120568988
XM_039815350.1 mRNA upstream 23109 22764652 ~ 22804767 (+) True LOC120568105
XM_039815351.1 mRNA upstream 23109 22767477 ~ 22804767 (+) False LOC120568105
XM_039816921.1 mRNA upstream 139103 22687094 ~ 22688773 (+) True LOC120569076
XM_039815631.1 mRNA downstream 98084 22964585 ~ 23026747 (+) True cdh2
XM_039816970.1 mRNA downstream 256022 23122523 ~ 23128952 (+) False aqp4
XM_039816969.1 mRNA downstream 256155 23122656 ~ 23128952 (+) True aqp4
XM_039816700.1 mRNA downstream 267755 23134256 ~ 23147417 (+) True LOC120568942
XM_039816701.1 mRNA downstream 267760 23134261 ~ 23147417 (+) False LOC120568942
XR_005640697.1 other upstream 149145 22641510 ~ 22678731 (+) False LOC120568311
TU157733 other upstream 215467 22608064 ~ 22612409 (+) False LOC120567968
XR_005640709.1 other upstream 930485 21870953 ~ 21897391 (+) False LOC120568354
TU157037 other upstream 1912588 20882706 ~ 20915288 (+) False LOC120568904
XR_005640618.1 other upstream 2452243 20373235 ~ 20375633 (+) True LOC120567833
TU158062 other downstream 810578 23677079 ~ 23685804 (+) True LOC120567964
TU158130 other downstream 984378 23850879 ~ 23855157 (+) True G117319
unassigned_transcript_561 other downstream 1001753 23868254 ~ 23868325 (+) True trnaw-cca_13
TU158168 other downstream 1039369 23905870 ~ 23908401 (+) True G117353
TU158169 other downstream 1046163 23912664 ~ 23914498 (+) True hes6

Expression Profile