RNA id: XM_039814983.1


Basic Information

Item Value
RNA id XM_039814983.1
length 984
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC120567912
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 35261558 ~ 35262902 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atggaGGTTGAGGACGGAGCCGAGCTCTGCTTTCCACAGTTCCCAAACACCTCCTGCATAAAGCCCTTGCCTCCTTGGCCCCAAACACTTACCATTGTGTTCTACTCCATCTCTCCGATCACTGTGACTCTCAACctgctcatcatcatctcaATCTCCCACTTCAGgcagctccacacacccaccaacatcctcctcctctctctggctgtctcagacCTTCTAGTGGGCCTCGTGCTGATGCCTGTAGAAGTTCTCCGAAAaacatcctgctggtttcttggtgaatttgtgtgttctACGTTTACTCTTCTTTCAGTCAACATTCCCTCAGCCTCAATAGGTGACATAGTGCTCATATCAGTTGACCGTTATGTGGCTATTTGTGACCCTCTGCACTACACCACTAAAGTCACTGCGAAGAGAGTtaaactctgtgtttgtctgtgttggctcTGTGCTGTTTCCTACAGCCTTCACTTTGTAAAGGATCTTCCGAGTCAAACACAGAACCATAAATACTGCTACGGAGAATGTTTGATGAACACTGATGGCATCTCACTGTTAATTGATCTTTTACTTACCTTTATTTTTCCAGTTACTGTCATCGTAGCTCTGTATCTGAGAATATTtgccgtggctgtgtctcaggctcgtgccatgcgctctcacattacagctgtcacactccagcattcagtgactccaaaggcaaagaaatcagagctgaaagcagccaaGAATCTTGGTGTTCTTGTACTTGTGTTTCTAATATGTTTCTGCCCATTTTTTGTCATAGGATGGGTAGATTACAACTGGATTAGAACTCCAATTGGACAGTTTATACtcattctgtatttttttaactcttgtctaaaccctgtgatATATGCCTTCTtgtacccctggtttagaaaatCAGTTAAACTCATTGTAACTCTTAagatactgcagcctggctcctctGAGACCAAAATGCTGTAG

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0004871 obsolete signal transducer activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162223 lncRNA upstream 55849 35205112 ~ 35205709 (+) True G120483
TU162142 lncRNA upstream 250516 35010181 ~ 35011042 (+) True G120411
TU162141 lncRNA upstream 255752 35005594 ~ 35005806 (+) True G120410
TU162127 lncRNA upstream 296018 34965146 ~ 34965540 (+) True G120397
TU162125 lncRNA upstream 307151 34953325 ~ 34954407 (+) True LOC120568917
TU162237 lncRNA downstream 57019 35319921 ~ 35320221 (+) True G120497
TU162238 lncRNA downstream 75837 35338739 ~ 35339004 (+) True G120498
XR_005640794.1 lncRNA downstream 296439 35559341 ~ 35560910 (+) True LOC120568837
TU162256 lncRNA downstream 296461 35559363 ~ 35560857 (+) False LOC120568837
TU162266 lncRNA downstream 375544 35638446 ~ 35641781 (+) False LOC120568940
XM_039816995.1 mRNA upstream 92842 35165658 ~ 35168716 (+) False LOC120569116
XM_039816996.1 mRNA upstream 92842 35166147 ~ 35168716 (+) True LOC120569116
XM_039816523.1 mRNA upstream 436737 34809892 ~ 34824821 (+) False LOC120568812
XM_039816521.1 mRNA upstream 436737 34816450 ~ 34824821 (+) True LOC120568812
XM_039816516.1 mRNA upstream 495227 34743728 ~ 34766331 (+) False LOC120568807
XM_039814677.1 mRNA downstream 168777 35431679 ~ 35443813 (+) True LOC120567707
XM_039816699.1 mRNA downstream 331976 35594878 ~ 35642033 (+) True LOC120568940
XM_039816721.1 mRNA downstream 1186135 36449037 ~ 36463662 (+) True pold3
XM_039816722.1 mRNA downstream 1186135 36449037 ~ 36463662 (+) False pold3
XM_039814682.1 mRNA downstream 1302859 36565761 ~ 36583870 (+) True LOC120567713
unassigned_transcript_569 other upstream 485409 34776078 ~ 34776149 (+) True trnam-cau_26
unassigned_transcript_568 other upstream 489337 34772150 ~ 34772221 (+) True trnam-cau_25
unassigned_transcript_567 other upstream 489412 34772074 ~ 34772146 (+) True trnar-ccu_3
TU161934 other upstream 803947 34453722 ~ 34457611 (+) True G120249
TU161901 other upstream 857557 34400801 ~ 34404001 (+) False rps28
XR_005640811.1 other downstream 340486 35603388 ~ 35609359 (+) False LOC120568940
unassigned_transcript_570 other downstream 964922 36227824 ~ 36227906 (+) True trnal-uaa_3
unassigned_transcript_571 other downstream 965553 36228455 ~ 36228537 (+) True trnal-uaa_4
unassigned_transcript_572 other downstream 966151 36229053 ~ 36229135 (+) True trnal-caa
unassigned_transcript_573 other downstream 972181 36235083 ~ 36235153 (+) True trnal-uaa_5

Expression Profile