RNA id: XR_005640632.1


Basic Information

Item Value
RNA id XR_005640632.1
length 4926
RNA type transcript
GC content 0.52
exon number 28
gene id epb41l3b
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 16756331 ~ 16811918 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTACTCAGCTGCATAGTGGAGTTTGATAGGCTGGTGGAGAGGGGGAACTGCAGCAGAGTAGCACCGCTGTCAGGAAACAGAAGCCCACTACGAATGCAACTCGCATGAACCAGCTGAACGAGGACGGTTTACCTGCGTGATTTACCATGACAACTGAATCAGGCACCGACTCGGAGGCCAAGCAGCCACAGGAGAACAAGGAAACTGGGAAAGCTAAAGCAGCAGCCGAACCCACCTCACCTCAGAACCAGCCAGAGCAGCTTCCCGCAGCCGCTGGACACAGCACCCCGGCCAGGACAGAACAGGAGCGGCAGGAGGAGGACCAGGTGTCCCACAGGTCATCCACAAGTCGTCTGTCCAGGTCTCCGTTGCGAGGAGTGAAGAAGGTGAAGATCATGCAGTGTAAAGTCACCCTGCTGGATGGCTCCGACTTTACACTCAATGTGGAGaaacgAGCCAAAGGCCAAGTGCTCTTTGATAAAATATGTGACCACCTCAATCTACTGGAGAGGGATTACTTTGGCATCACATGCAGAGATGTAGAGAATCAGAAGAATTGGCTAGACCCTTCCAAGGAGCTAAAGAAGCAGATCAGGACTGGTCCCTGGAACTTTGCTTTCAACGTCAAGTTTTACCCTCCAGACCCCTCCCAGCTGACTGAGGATATCACAAGGTACTATCTGTGTCTGCAGCTGAGGGATGACGTGGTTTCGGGCCGCCTGCCCTGCTCCTTTGCCACCCACACGGTGCTGGGCTCCTACACGGTGCAGTCTGAACTGGGAGACTATGACCCCGAGGATTTAGGCAGCGACTACATCAGCGAACTGCGCTTCGCACCCAATCAAACCAAAGAGCTAGAGGAGAAGGTCATGGAACTTCACAAGACCTACAAGGGAATGACACCAGCCGAAGCAGAGATGCACTTCCTGGAAAATGCCAAGAAGCTGTCAATGTATGGCGTAGACCTCCACCACGCTAAGTTGGTAGGGAGTCTCTATGAATGCTTGGCTCCAGCTGAGGGAGAGGACTCTGAGGGCGTGGAGATCATGTTGGGAGTTTGTTCAAGTGGCCTGCTCATCTACAGAGACAGGTTGCGGATCAACAGGTTTGCTTGGCCCAAAATCCTTAAAATCTCCTACAAAAGGAATAACTTCTACATCAAAATCCGGCCCGGCGAGTTTGAGCAGTTTGAAAGCACAATTGGTTTCAAGCTTCCAAATCATCGCGCTGCCAAACGGCTCTGGAAGGTCTGTGTTGAGCACCATACCTTCTTCAGGCTTGTATCCCCCGATGCACCCCCGAAGAAGTTCCTGAGCCTCGGCTCCAAGTTTCGCTACAGCGGCAGAACGCAGGCTCAGACCCGCAGGGCCAGCTCTCAGATCATCAGACCTGCTCCGCTCTTTGAGCGCTCCTCCAGCAAACGCTACAATATGTCCCGCAGCTTAGATGGAGCACCAATTATGGAGAACCATGAGACTCTCATGAAGGACAGTGGCACTGACGGGGCGGCCAAAGTCATCGCAAAGGGAGACATCATCACCACGGTAACGACAGAGAAGAAGGCAGAGGAAGAAAAGGCGGAGCAGGAAGATGCTCAGATGGATGCTGGAGAGACACCAGAACCCATGGCCACCACACCGCTCAGACAAGACGCAAAGTGCTCCCCTCATGTATACACAACCGACCCCCTCCGCTCTGAGCTCTCACTCCCCTCATCTCCTGTGTCATCAACTAAAGTACGGCGGAGGCGCAGGGAGAATGCGCGTAAACGGGCCTCGTCAGTCAGTCCAGCCAAGAGCAGCGCTGGGTGCCGCCGCCGGCAAGCCCTTGCCGACCGCAAAGCCGCCCTGCTGGACGAGCAGGTGCTGCTGCTCTCGGCCCGCAAGCAAAGGCTGGAGCAGGGCAAGAGCCGCGGCGGCACactcttctccttctccctgCACCTGCCCGACCTGTCCGCCTACCTGGACGAGGACGGCTACATCACCTTCCCCGATCTGTCAGAGATGCGCTTCCTCCCTCTGTGCGCGCAGAACTTCCTGCCCATTAAGTCACCTTCACTCATCCCCTgcttcctcttcatcttcttcttcctgcTCTCCACCTCCTTCTCCGTCCCCTACGCCCTCACCCTCTCCTTCCCCCTGGCGCTGTGCCTCTGCTACCTGGAGCCCAAGGCAGCCTCCCTGACCGCCTCCTTAGCCCAGGGCTACCATGACCATGACAgttcagaggaagaggagACTGACAGCGAACAAACAGACTTTGCCTTTGACGGAGAGATGACCGCCACCGAGTCGGACGCAGATGAGGACTCTGAGATGCGGACTCAGTATAGTTTCAAAAGACGAGTAAAAGGGGAAAACGTTTTTATCAAGCATAGTAATCTGATGCTAGAGGACACCTCGCCTCCGGAAGAGATGGTCAAGCACCAGACCAACATCAGCGAACTGAAGCGCTCCTTCCTGGAGACAGGCGACAGCGCGCCGGGCCTGACCGAATGGGAGAAGAGACTGTCCTCGTCCCCTGCGCACTCACCCAGAGCAGACGAAGCACCAATGATAGTGCCGCTGGAGCCGCAGGATacTCAAGATGAGCAGCCTGCAGGAGAAGGGACTAAAGAGGAGGTGGAACCTAAAGCCACGGAGGCGGCAGGATATCTGGTCAAATATGTGGTGGATAGTATTGCAACAGATTTGGCCACCTCCTCGGGGCCACACGGGATTAGTCTGTCAACCACAATGGACGACGACGTCTTCATGGACGGGACCCTCAGGGAGGTGGACGAGAAAACCCCCGACTCCCAAGAGGAGGTGTCGGAGAGGGCAGAGATGAAGGTCAGCCCCGGAGctgtcagacaggaagtgtCCCAGGCCATCAGTGACAAGAAAGGGACGCTCATTATCTTGAAGGAGGCGGAGGATCAAGTAGACACCGAGGGCAAAGAGACAAGTGCTGCGGATGAAGAAGAGGCGCCTGTTGTCCCTGGAGAGGCCGAAGCTGGGGAGAATGAAATGCTGTCCTctaaagagagagaatatatCAAAGAagacacatctgttgttttaGAAGCCAAAACCACAGTAGTCAAGACACAGAGTCCAACGATGGAGATAAAAACTGATGACATGACTCAGATTAAAGGTTCTGGCTCGCCTAAAAAGGCCATGGCATCGTGGATATCTGAGGAGGTGAAGACCGGCGCTTCAGAAGTCATCGGTGTGTCGAGAAAGCAAGTAAAAGAGATGAAGACTTTTGATGCCATGCAGCAGAAAGCAGAAATCTTCACCTTCGTCGAAGAGGTCCAAACGGAGAAGTCAAAGTCCAGCCTGACTCAGATTACAGTTTCTGAATCTTCATCTGCATCCTTATCAGTGTCTACGCTGGGATGGGTTTCCTCCTCTGAAAAGGCATCAGCTGAACCGGAGGAGAAGGCGGTTGTTGCCACGGAGACAGAGGCAGCACCAGTGGAGTCGACAGGGCCAACGAGTCTTGACGCGATGGAGGTGGGAGCCAAAGAGGTGCCTGTagtccacacagagacaaaaacgATCACTTATGAGTCTGCAGAGGTTGACACTAATGGAGACGTAGACCCCGGGGTGTTGCTGAGTGCTCAGACCATCACCTCGGAAACCTCCAGCACCACGACAACCACACACATCACAAAGACGGTCAAAGGAGGAATATCAGAGACGAGAATTGAGAAAAGGATCGTCATCACAGGAGATACAGACATCGACCATGATCAGGCTCTGGCTCAGGCCATAAAGGAGGCTAAAGAACAGCATCCTGACATGTCAGTGACCAAAGTAGTGGTACATAAAGAGACAGAGATCACGCCAGAGGATGGGGAGGACTGACCCAGCTGTGACACCACCAGCCTCAGTGACACATTGCTTGTGGTCATACTCAAAATGGAGTAACACTGAGGGCTGTTTTCTGTTCAACCACCTAGAATCCAACATCCAGAACACCACATATTACTCCGGGACTCTCAGAAGTTTAGAAAGGCTCCTACTCTCCAAATGCTGCAGCTAGTCGCAACCATTacctgcaaaataaataaatgcatcttGCATGAGAAGGACGCAATGTTGCATTATCAAACAAATGGCAAGATTATACTGAAAACTGTACGATTTTAAAAATGGTTCTCCATCCACCTGCACGCCGAATCCCTGTGTGCAGCAAGCAAACGGTTTGCTTTCACTGCCTTATGACTTTGATGCATTTTTATGATTATTGAGAATAATTATTGTAGCAACGTTTTATTTATGAAACAAAGCCATCACTCCAGAAACTTAAATCGCTGTAGGCTGTATATGTTTAGGAAGCATACACTATTTAACCTTGCTGTAGAAGTGCCAACCTCATTTGCAGCATTGCCTCACTCACTCCAACAAGCCGATGAATTTCCGTCAGGTCTGCCACCACAGAAATCACTACAGCGCAGTTCTGTACAAATCAAAGCTTTCCTAGGATAATAGAAATGTATCTTTCACAGTTGATTTTTGTCACGTCCACTCGAATTGCATTTCCCTTTTTTATGatcatttcagtattttatagTTTCCTCATCAATTGATTCCACCCAGAAGGTCTGTTTTGGCAAATGCCAAGGAATCAAGATTTCTGTGCAAGAAATAGATTTTTATGTGCCTGTGTAGGCTTTGAATGTTCCCCAGGGTAGATGGTCGGCTGCAGCACAAGTCCCAGGTTTGTGCGACTGTGATGCAAAGGGCTCAGACTGCCGAGCTCTGCCCAATTTAGCCAAGAGAGATCTGTCAAAACACCCCACCTTCCCACCCAAGACATGTCAACTGTATGCCTCCCTCATCTGTTCAACTGTATCTGAATAACCGAGTATTGTCCGTGTACAGCCATGTTTTCCTCAAACTGGTGAAATAAAAGTGGcaaatgca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155549 lncRNA downstream 5056 16750900 ~ 16751275 (-) True G115331
TU155540 lncRNA downstream 141406 16613028 ~ 16614925 (-) True G115323
TU155522 lncRNA downstream 195858 16558268 ~ 16560473 (-) False G115309
TU155520 lncRNA downstream 198133 16543613 ~ 16558198 (-) True G115309
TU155482 lncRNA downstream 243436 16508577 ~ 16512895 (-) True G115278
XR_005640831.1 lncRNA upstream 21038 16823302 ~ 16824660 (-) True LOC120569046
TU155651 lncRNA upstream 234602 17036866 ~ 17039107 (-) True G115391
TU155697 lncRNA upstream 310452 17112716 ~ 17114744 (-) True G115428
TU155698 lncRNA upstream 317657 17119921 ~ 17121046 (-) True G115429
TU155699 lncRNA upstream 320458 17122722 ~ 17123058 (-) True G115430
XM_039816723.1 mRNA downstream 1565 16751993 ~ 16754766 (-) True LOC120568957
XM_039816659.1 mRNA downstream 44067 16685480 ~ 16712264 (-) True LOC120568912
XM_039815831.1 mRNA downstream 194168 16541130 ~ 16562163 (-) True acss2l
XM_039815832.1 mRNA downstream 194291 16541130 ~ 16562040 (-) False acss2l
XM_039815933.1 mRNA downstream 320090 16430142 ~ 16436241 (-) True napgb
XM_039815013.1 mRNA upstream 12428 16814692 ~ 16820034 (-) True LOC120567917
XM_039815850.1 mRNA upstream 45546 16847810 ~ 17015626 (-) False LOC120568369
XM_039815847.1 mRNA upstream 45546 16847810 ~ 17015626 (-) False LOC120568369
XM_039815846.1 mRNA upstream 45546 16847810 ~ 17015626 (-) False LOC120568369
XM_039815845.1 mRNA upstream 45546 16847810 ~ 17015626 (-) False LOC120568369
TU155525 other downstream 116519 16637108 ~ 16639812 (-) True G115312
TU155443 other downstream 420399 16330953 ~ 16335932 (-) True LOC120568735
XR_005640638.1 other downstream 554633 16182654 ~ 16201698 (-) True cc2d1b
XR_005640639.1 other downstream 555074 16182654 ~ 16201257 (-) False cc2d1b
XR_005640637.1 other downstream 555074 16182654 ~ 16201257 (-) False cc2d1b
TU155670 other upstream 237536 17039800 ~ 17041476 (-) True ly97.3
TU155671 other upstream 237536 17039800 ~ 17108904 (-) False ly97.3
TU155672 other upstream 240862 17043126 ~ 17045062 (-) True G115406
XR_005640621.1 other upstream 1680892 18483156 ~ 18494488 (-) False sppl2
TU156258 other upstream 1914618 18716882 ~ 18718544 (-) True LOC120568909

Expression Profile