RNA id: XM_039815020.1


Basic Information

Item Value
RNA id XM_039815020.1
length 2209
RNA type mRNA
GC content 0.48
exon number 7
gene id LOC120567922
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 13033439 ~ 13037812 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAGTATTTGTCTTTTATGGACATTTGGAGTTTAGAGAGTTTCGTGGCGCAAAACAGGATCATGTGCAGATTTTGTGAGGGTCCCCTGCCCCTGTCCTCGCTGAGGCTCCTGGTTCCACCTCTGCGGGTGATGACGGCTGTGATGTGGAAGGTGGTTCGTCTGAGGAACGTCATGCATTATGGGAATGTGGAGGAGTTTGTGTCCTTGGTAACTGAAGCCATCCCTGACATCTTGACGGACAGACAGATGACACTGCTCACTCTGGGCTTAAGAGCAAGGATGACATTACAGATGTTAAGTTCTGACCAGTCAGAGGATCTCAGAGGTGTTAAAACACGCTTGAACAGCCTCCTGGCATCTAGCTCAAAACAGGTGCATCCGGGTAATGAAGATCTTGAAGCCAACTTTGTCAGGCTTGTTCAAAGACTCCTGGAGGACCCAAAAGGGAGAGAGCACTTCCTCAAGAATGTGTTTCCTGTGGAGTATGGGCCTGACTTTGATACGGCTCTGGAGACACTGATTTGTGAGTTATTTACCAAACTGGAAGAGTTGCTGCTTATACCAGACTTTAAGCAGACCGCAGTGTGGATCAGTGATACGCCCTCTGTGCTAGAAGAGTACATGCAGTGTGTATCCAAAGCAGATGACCTCAAAGTACTGCTCAGAAGCAAGGCCCACTGTGGTAAAACGACCAAGATGGATACCTGTTTGCCCTCTATCTCAGAGCAGCGGCTCTTCTCATCATTATCTCTCCCTCCTTCACTGCGAGAGGCCAACACCAAAGATGtagactctcacacacaaacatttcaaaaccaaAGAGAATCTGAGGGGATTTCTCCTCAGGACGCAGAAGACATGGCGATACAGGATGTGAGATGGAAATCTGAGGAGGAAACAAACATTCTGGACAGCAGCAATGCACAACAAACAACAGGAGGGAAATGCAGCGACAGCATTCCTGATGTTGTGGAGGAGTATGATGACGGAGGTTCAGGCACCTGCTGGGTTCCCTCTACATCTACTGAGAGTCCTGTATTGTCCAGCTCTAAGATTGGCCCTCCAAAGCAGAGAGTTGCACACAAATGCTCTCAGTGTGGAAAGTGCTTCATTTACCGCTATAAACTCCTGGAGCATCAGAGGCTTCACACCGGAGAAAACCCTTTCAAGTGCTCTCAATGCGGAAAGGCTTTTAGAAGGACCTCTGACATGTCAACTCACAGGCGGTTACAGTGCGCAAAAGCAGCTTATATTTGCATCAAATGTGGGAATAGCTTCCAATCAATACAGGACAAATTAGGACACCGGTGTGGTCATAGTGTCCAGAAGTTTGACTGTTCTCAGTGCGGAAAAAGCTTTAAGAAAATGCACTTGCTGAGTAGGCATGAGCTGACTCACACCCAGAACCGTAACTTCACGTGCAGACAGTGTGGGAAAGTGTACTCCAGTATGAGAGAGCTGAAATCCCACCAGAAGATTCATCCTCCGGAGCTGTCCAATCAGTGCATGCAGTGTGGGAAGTTTTTCAGCTCTGTTGCTGGTTTGACAGCCCATGAGCTGCGCCACAGgcaacagagaacacagatctGCGTGCGTTGTGACAAAGCTTTTAAGAACAAACATGACCTAAATCTGCACATGCGCAGTCACACAGGCGAGAGGCCATTTCAGTGCACATACTGTGGGAAATGTTTCTCTGTGTCAGGAAACCTGAACGTACACATAAGGACccacactggagagaaaccGTATTTGTGCTCTGACTGCGGCAAGGGTTTTGTTTCAGCCGGCGAGCTGCAGATACATAGACGCACTCACACGGGGGAAAAACCTTACAAGTGCACTGTATGTGAGAAGGGATTCACCATGGCAAGCAAATTGACAATTCATATGCGTGTTCACACCGGAGAGCGCCCTTACATCTGTCCTGAATGTGGGAAAGGTTTTTCACGTGGTGGCGAAATGAAAAAACATACCATGAAACATACGGGGGTGCGACCCTACGCTTGTCATTTGTGTGCAAAGACTTACACATGCCACAATCACCTGAGGAGACACTTGAAAACTCACAGTGTAGTGAAAAACCAGGCTGTCTAATTCCATTGATTACCATTGTCATTTTATCAAACTGATGTAGCGATGCAACTAGCCTGTACTGATTGCGGTGTTGACAGCATGCACTTTGTAATACACTCACCCTCTCTTGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153760 lncRNA upstream 5269 13027079 ~ 13028170 (+) True G114000
TU153732 lncRNA upstream 119218 12913617 ~ 12914221 (+) False LOC120567760
TU153729 lncRNA upstream 126327 12906596 ~ 12907112 (+) False LOC120568152
TU153701 lncRNA upstream 159129 12861625 ~ 12874310 (+) True G113956
TU153671 lncRNA upstream 254041 12778340 ~ 12779398 (+) False G113938
TU153769 lncRNA downstream 114287 13152099 ~ 13153594 (+) True G114008
TU153788 lncRNA downstream 145527 13183339 ~ 13186363 (+) False si:ch73-71c20.5
TU153799 lncRNA downstream 158449 13196261 ~ 13198734 (+) True G114033
TU153802 lncRNA downstream 161956 13199768 ~ 13200746 (+) True G114035
TU153804 lncRNA downstream 167013 13204825 ~ 13207023 (+) True G114037
XM_039815014.1 mRNA upstream 7508 12979093 ~ 13025931 (+) True LOC120567919
XM_039815017.1 mRNA upstream 7508 12979093 ~ 13025931 (+) False LOC120567919
XM_039815016.1 mRNA upstream 7508 12979093 ~ 13025931 (+) False LOC120567919
XM_039815018.1 mRNA upstream 7508 12979093 ~ 13025931 (+) False LOC120567919
XM_039815015.1 mRNA upstream 7508 12979093 ~ 13025931 (+) False LOC120567919
XM_039815019.1 mRNA downstream 1078 13038890 ~ 13045691 (+) True LOC120567921
XM_039815651.1 mRNA downstream 10096 13047908 ~ 13074569 (+) True col6a1
XM_039815653.1 mRNA downstream 43931 13081743 ~ 13096416 (+) True col6a2
XM_039815654.1 mRNA downstream 63590 13101402 ~ 13105801 (+) True zgc:162816
XM_039815655.1 mRNA downstream 68887 13106699 ~ 13112264 (+) True orc2
TU153727 other upstream 57802 12929215 ~ 12975637 (+) True G113979
TU153737 other upstream 76083 12952580 ~ 12957356 (+) False LOC120569010
TU153451 other upstream 446276 12582642 ~ 12587163 (+) False ap1g2
TU153339 other upstream 873184 12157451 ~ 12160255 (+) False LOC120568189
TU153340 other upstream 873184 12157516 ~ 12160255 (+) False LOC120568189
TU153768 other downstream 76837 13114649 ~ 13117356 (+) False rpl37a
TU153770 other downstream 85243 13123055 ~ 13125463 (+) False ndufb3
unassigned_transcript_558 other downstream 180327 13218139 ~ 13218210 (+) True trnae-cuc_17
TU154336 other downstream 1249338 14287150 ~ 14295268 (+) False LOC120568245
TU154337 other downstream 1250543 14288355 ~ 14290960 (+) False LOC120568245

Expression Profile