RNA id: XR_005640639.1


Basic Information

Item Value
RNA id XR_005640639.1
length 5679
RNA type transcript
GC content 0.46
exon number 24
gene id cc2d1b
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 16182654 ~ 16201698 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atgtttgGTAAAAAGAAGAGAGCACCGCAGCCGAGAGGCCAGGGCGCAGCTGCAGCCAAGCAGATGGGTCTGTTTGTAGACCTGGACCCTGAGGAGATGATTATGGGTATGGAGGGGAATCTGGACGACCCGGACTTGGAGGATGAACTTGCTGCTATCACTGGAAatagagctgctgctgctggaggaaGAGCCAAGCAGAAGGGGAAAAGCCCCCTGCCCATGGAAGACATCGCAAGAATGGCTGACGAGTGTATGAgagatgaggatgaggatgaggatgacaGTAACCTGGAGGACGATGAAGATCTACTGGCAGAGCTACAGGAAGTGGTGGGTGAAGGGGAAGCTGAGGATGCTGTATCTGTTTCCCCCACATCCTCCCCCACTGCTGAATCTCCTCAAGCTGAAAAACCAAAGTCCCCACTGACGCAGCAGGAAGTAAAGGTCTCCTCAGCAGCTCCCGGCAGCCTCCAACACACCCTGGAGGAGAGAATTATCATGTATAAGACGGCCTTACAAAACGCTAAAACTGCAGGGGATACCTCCAAAGCCAGGAGATACGATCGTGGCCTGAAGACTCTGGAGACAATGTTAGCTGCTGTTAAAAAAGGGAGACCTGTGAACGAGGCAGAGATCCCTACGCCTGTTGCCACTGGAGCTCCGAGTTCTGCCTCTAATCCTGCTGTTCCCCATCGACCTCCTCCCCCTGTACCCTCTTCTTCTGAACCCACTCCTTCAGATCAGCAGGGGGAGGCGGAGGCCACGATGCCACCGCCACCTGCTGTACCAGAGATCCTCACCCCCAGCAGTGAGGAGGAGCAGTCGTCCTCCGCCAGTCTGCCGCCTCTGAGCACTGTCCCATCTCCACAGGAGCAGACAAAGGAACCTGCAGACCGGCCTCAGACCAGTCTGACAGATGTGAACAAGGCAACCAAGACGTTGCTTTTGGAGAGGCAGAAAGAATACAAGATGGCAGCACTGAGAGCCAAGAAGCAGGGAGATGCTGAGCAAGCTACACTTTACTTCAAGACCAGTAAGAGGTTCGATGCGGTGATTGAGGCGTTGGAGAAAGGACAAGCAGTCGACCTGAGTGGTCTTCCTCCATCTCCAGGACAGGAAGGAGGCTCTGCTCCAGTGAAAGAACCTTCCTCTGGGCAAAACATAGAAGTCACCCAACTGGTTACAGCAGCTCCAGCCCCAGCAGCTCCCAAAGACGTGCTGGAGGCTCTCGAGCAGAGAAGAGCCAAGTATGCGGAGGCGTCCAATCAGGCTAAAGCTGGTGGAGATGACCGCAAGGCCCGAATGCATGACCGTATCGCCAAGCAATACCAGAGTGCCATCCGAGCTCACAAAGCAGGCAAAGCGGTCAACTTTGAGGAGCTACCGGTTCCCCCTGGTTTTCCTCCAATCCCGGGCCAGAAGGCGTCAGGAGCGGAGCAGGGATTCGTTGCTGCTCTGGAGGCAGCCAATAAGCTTGCCTCCACTGATGCTTCCCAAATagcagatgaagaagaagatgaggagaaggaggaggagTCTAAGCCTGCTGTTCCAGAAGAGCCGAAGAAGCCCATGTTAGATTTCTCCACTGCAGGGCAAGACCGGAAAAGAACTCCGTCAGTTTCACCTGACAGAACCGCTGCCAGGGAAGGACTCTCACCAACAGCGGGTCAGCAGCTGGAGTTTCTGGAGGGCAGGAAGAAGATGTACATGAAGGCAGCTCTGCAGGCAAAGCAGAAGAACGACATGGAGCAGGCCAAGATTTTCCTCCGCACCGCCAAGGGCTTCGAGCCCCTGATCGAGGCAGCACGCAGCGGCAAGGCTGTGGACATCAGCACAGTGCCGTCGCCCCCTGGTGACGAAGACGACGACTTCATCCTGGTTCATCACAGTGACGTGCAGATCTCAGAGAAAGCAGAGCAGCTTTACACACAACTGGCCAAGATCCTAAAAGAGCAGTACGAGaaatgtatgACTCACTCCAAGCAGTTCACACATCTGGGGAACGTCACAGAAACCACAAAgTTTGAGAAGATGGCGGAGAGTTGTAAGAAGAGTCTGGAGGTCCTGAAGCTGGCTCAGTCGAGAAGTCTTCCTCCTCCTAAACATCACTTTGAGGAGAGGTCGTTTCAAACTGTCAGGATATTTCCAGACCTGAGCAGCACTGACATGGTCGTTATCATCGTCAAAGGGATGAATCTTCCTGCTCCGAGTGgAATCCAAACAAATGATCTGGATGCATACGTCAAGTTCGACTTCCCTTACCCCAGCACGGAGCAGCCGCAGAAACACAAAACGGCTGTCATCAAGAACACTAACTCCCCGGAATATAACCAGAGCTTTACCCTGTCAATCAACCGTAACCACCGCGGCTTCAGGAGGGTGGTGACGTCTAAAGGCCTCAAACTGGAGCTGCTGCACAAAGGCGGTTTCTTGCGGAGCGACAAGCCGATCGGGACGGCCCTCGTAAAGCTGGAAAAACTGGAGTCCCAGAGTGAAATCAGGGAGATCGTAGAGGTGATGGACGGCCGTAAGGCCACAGGAGGGCGTGTTGAAGTGAAGATCCGCCTGCGGGAGCCTCTGAGCGGACAGGACATGCAGAAGAGCACCGAGCGCTGGCTGGTGATCGACCGGTCACAGGTTACATCAAATATACCGTGTTTATATTTTTGCAGCATTGCACCTCAAAAGACAAACCTGAGATAGTGTAAAAATGTCTGATGTTGGGTTCTTTTCATCTCCAAGGTTCTTGTTTAGATGCTGCTGCAAGATTAAAGATGATTCACAACATAAAGATTAAAGGCACTCAATCAACAACACTCGGAGGAGGATGGAGTTTGGGATGTGATGAGGACGGTCTGTTGTTCAGAGTGGACTTAACTACACGGGTCTTTGACTTGGTAAAACTTTTGCACATTTGCAAGACACAAGAGCTCCCTTCCACACTGCGGTCCACCAGGAGCAGACAGGGAGCCCTCCGTCTTCAGTCTGACACCAGCTGATGGACAAATACTTGTGATGCACCAGGGCAGACTTGCAACAAGGGGAAACCTCCTTAAATCAGAGAAAACTATTCAGGCAAAGATTACAGTTTTCCAAAAAGTCTCCTCGTGTATCACTCCATCTCCTGGAGGACAGCAGGCAGCGTTTCCTCTGCTAAGGGGCTCAAGGGTCGAGCTAAACTGATCCTGCTGCCCAACGTGACTTCAGTTAATATATCAAAGATGTGTTCATATTCTTCATATTATTACAGCTCTGGTATCTAGAACTGCACCTATGCACTAATACCAAAGTAATCACTGTTGCTGTAAAATCCTGCATATTTGAAATCGCCAGTTAGCTGCCAAATCTGTTACGACACGAGAAGTTTAATGTATGACAGgactattttttattatttttccccACACAATTCATCAGTTTAGTTTTAAGTGTGAGAATGCAGGCAGGCGCAGCAACTCTCATAGATGTTTTAAAGGAGTAAGCCAAGAAATGATGATACTGTATACTATGGTAcgattatatatttatttggaaGACCACACTCCCTTTTTGGCACCTTTCACTTTGATTAGCAAGTCCTCGACCTGTGATCACTAAACTGCACACTCACTTTTCTGTGGCTTTAGGTGTGTTAGATTTATATTTGTCTTGTTTACACTCAATAATACAAATCTGTGCAAAATCACAACTGAGCTGAGTTTGGCTGATCTTCAATTGCTTATGTCTAAAAAGctaaacatgattttttttttttcttaaagcagACATCCATTAACCATGATAAGCTGGTTAAAAGGTCATTTTAAGTAATCATGACTGGATGACTGAACTTAGTTAGTTTCCTGTAGATATTttagttaaaggaatagtttgacctTTTGGAAAAGTGTATTTATGTTCTTTCCCGCAGAGAGTCCGATAAGAAGATTGATGCcactcttgtgtttgtgttaaaaatgaaGCTAGAGCCAGGACAcaattagcttagcataaatacaAGAAAGAGGGGTCAAACGGCTAGCCTAGCGCCCTCCAAAGTTAAATAATACACCTGCCAGCCCCTCTAAAtttcacaaattaacaagaCTCCGATTAGTGAGGACTTTAGAGGTGCTGCCAGGTGTATTAGTTTAAAgtttggacagagccaagctagccGTTTcaccctgcttccagtctttatgctgaaTTAAGCTTATCACCTCCTAGTCtcgtattgccagaccttcctccacagcactgcgaaggagggtctggctactccacacagcattcctggatgggagaaagacgtgctctggtttattggcatttctttaaaccaatcacaatcatcttgggcggccaTAAGCTCCGTACGGAGCCGCccgcaaaatagcctcgggaaggaactggtttcggttaaggttgttttagtcgtgcaacagaaaactctgattggacagatagtctagctagctgtccctgcagagatctgaggagcagttaagcATAGTCCTCAAAAATTCCCGGAGTTTAAAATCCCAatgcaaagaaagcagaaggtaacggacatcagCCAAAAAGAGGTGCATCCAGCAGAATTTCCAGCgtcactggagcaatcccgaaagttgaacgtcgtggatatagactaatcacCTCCTGACTCTTGCACAATACTTAACACACAAGAGATTGGTGAAAGATCTTTTCCTCAGACTCTCgacaagaaagaaaataaaataagtgtATTTTCCCCAAATGTGAGACTATTCCTATgcgtgttgctttttttttaacaatgcatCAGACCCCGGATGTTCGGATGAGTACttattttaactgttttaagTGGTTACTTACCCGTTGCGATATGAACCCATGCAGATTGAATTTGTTTTGTGCTGctcaaagatttaaaaataacatttgaaataattaaTGATTGAAAGTAGATTTTTGACCTTTGAAAATGCAACTCAAAAAAATAGTTTAAGGAAAATAATGAACTTTCTATCTCAGCTTTAGGGTAATACGGACAAGAAGTTCTTTCAGTGGTGGACATTTGAACATCAACCACATCTGCTGATCTAAAGCTAAATGGACCTTAATGGTGAGATTGTTACATCATTGTTAGCTTTGTCAGTTAATGTCTTTTCATAAACAAAGTCCCATCTAAGTAGTTTTATTGGAGCAACTTTCTACTGAAGATTTAGTCCTAAATGAACACTGTTGGTTTGATTAAGATTGAACATTGTTTCTGAAAAGACCTGTTTCTGTTAagagtaaatgtttttttggtaaTTTCAGCAGCATTCTAATAAATGCTAGACAAGAAGCCATAACAAACCTACTGAGCCAACTACATAAGTACCATTTTCCAACAGGTTTACCTCCAAACTGTCTAACGTTATTTAGTTGCCAAATGTTACTGTGGTCACATTTCATTCCCGTTTCTTTTTAGGAAAACATGAATCAATGCAAGGTTAAATTCACTATgaacataggcctacataattAATACCCATCACTTTATTTTCTGTTAAAACATACTTGTTTACAAAGATTGAGGATGTTAATATTTACAAAATAGTAATCACTAAAAACAGAATTAAGGctagattttgtttttaattgaatttgCCTACCCTGCTTAAAAATGTACCAAATTAAAaatcttgttttcatttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155343 lncRNA downstream 208 16178079 ~ 16182446 (-) True G115176
TU155349 lncRNA downstream 5444 16175965 ~ 16177210 (-) True G115180
TU155348 lncRNA downstream 6948 16175358 ~ 16175706 (-) True G115179
TU155347 lncRNA downstream 8101 16174261 ~ 16174553 (-) True G115178
TU155339 lncRNA downstream 10843 16171473 ~ 16171811 (-) True G115175
TU155366 lncRNA upstream 18637 16219894 ~ 16220110 (-) True G115191
TU155369 lncRNA upstream 20531 16221788 ~ 16222434 (-) True G115192
TU155377 lncRNA upstream 42535 16243792 ~ 16245893 (-) True G115200
TU155439 lncRNA upstream 115394 16316651 ~ 16316972 (-) True G115240
TU155431 lncRNA upstream 116164 16317421 ~ 16319970 (-) False mppe1
XM_039816248.1 mRNA downstream 38968 16137864 ~ 16143686 (-) True txndc12
XM_039816243.1 mRNA downstream 71218 16104772 ~ 16111436 (-) True slc25a24l
XM_039816245.1 mRNA downstream 71219 16104772 ~ 16111435 (-) False slc25a24l
XM_039816244.1 mRNA downstream 71221 16104772 ~ 16111433 (-) False slc25a24l
XM_039816235.1 mRNA downstream 78939 16097986 ~ 16103715 (-) False fubp1
XM_039814529.1 mRNA upstream 820 16202077 ~ 16208977 (-) True LOC120567616
XM_039815485.1 mRNA upstream 26681 16227938 ~ 16242697 (-) True LOC120568161
XM_039815487.1 mRNA upstream 26681 16227938 ~ 16242697 (-) False LOC120568161
XM_039815486.1 mRNA upstream 26681 16227938 ~ 16242560 (-) False LOC120568161
XM_039815488.1 mRNA upstream 26681 16227938 ~ 16242560 (-) False LOC120568161
TU155326 other downstream 34533 16144160 ~ 16148121 (-) True G115164
XR_005640845.1 other downstream 769595 15412986 ~ 15413059 (-) True LOC120569143
XR_005640844.1 other downstream 770187 15412393 ~ 15412467 (-) True LOC120569142
XR_005640843.1 other downstream 770814 15411663 ~ 15411840 (-) True LOC120569141
XR_005640842.1 other downstream 771307 15411162 ~ 15411347 (-) True LOC120569139
TU155443 other upstream 129696 16330953 ~ 16335932 (-) True LOC120568735
TU155525 other upstream 435851 16637108 ~ 16639812 (-) True G115312
XR_005640632.1 other upstream 555074 16756331 ~ 16802264 (-) False epb41l3b
TU155670 other upstream 838543 17039800 ~ 17041476 (-) True ly97.3
TU155671 other upstream 838543 17039800 ~ 17108904 (-) False ly97.3

Expression Profile