RNA id: XM_039815031.1


Basic Information

Item Value
RNA id XM_039815031.1
length 1745
RNA type mRNA
GC content 0.45
exon number 9
gene id pigk
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 15923702 ~ 15954239 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ccTACCGGAAGCACTTGCTGGGCGGAGCCGCCGGTTTTCACTTCCTTGATGCATAGTGTtgccttttatatatgtcaatgagtgTTGCACAATGAAAATACTCACTTTTTTCAGCTTATTTTCCTCATTCTTATCAGCGAAAAGCATTAACGTTGAGGAGAACGCAGGGCAGTTCTTCAGCAGTGGTCATACTAACAACTGGGCTGTTCTGGTGTGTACATCGAGATTCTGGTTCAACTACCGTCATGTGGCCAATACTCTGTCCGTCTACAGAAGTGTTAAGAGGCTGGGCATTCCTGACAGccACATAGTTCTCATGCTGGCTGATGACATGGCTTGTAACCACAGAAACCCCAAACCTGCCACAGTGTTCAGCCACAAGAACATGGAGCTGAATGTGTACGGTGATGACGTGGAGGTGGACTACCGAGGATATGAAGTGACGGTGGAGAACTTCCTGCGTGTTTTGACTGGCAGACTGCCACCCAGCACTCCACGCTCAAAACGCCTCCTCTCTGATGACCGAAGCAACATTCTCATATATCTAACAGGCCATGGCGGAAATGGCTTTCTGAAGTTCCAGGACTCTGAGGAGATAAGTAATGTGGAACTGGCCGATGCTTTTGAGCAGATGTGGCAGAAAAGAAGGTACAATGAGCTGCTCTTCATCATTGACACCTGTCAGGGCGCTTCCATGTATGAGAGGTTCTACTCTCCAAACCTCATGGCTTTGGCCAGCAGTCAAGTTGGAGAGGACTCCCTGTCGCACCAGCCAGATTTGGCTATAGGAGTCCATTTGATGGACCGTTACACCTTCTACCTGCTGGAGTTCCTGGAAGACATCCACCCTGCAAGCAAAGCCAACATGAATGACCTGAGATACATCGGCCGCAGGGACCACTCTTCATCCCCATCACCACCTACCCCCAACCTCAGTTACAATCAAAACACCTCAAATCCTTACTCGCACAATCAATGTGCTCTGACTAATCCTTATTATTCTTTCCAATGTTCCTCTTTCTCAAGATGCACTCTTTGTTCTTGAGCTTTTGTGGAATTAAGGATCGATGCTATGGATTTCCCAGAGAAGCCCACCaagttctttatttatttcttttttttttccagtctgCAAAGGCTTGCCCTTTTAATGAAACAGAAATTGCCTCCACCTTCCAGCAAAATACTCCACCATTCGTGTGTTTTTCAAGTCCTGTTTGGCTGATAGAGATAACATTCACCTTGGTttaatgattttctttttcttttcaaatggaGAGCCCTGTCCGACAACACACTGATGAATCGCACACTTAAGAGGATTAACCCAACCAGTGGTTACACACCAGGCACTAAAAGAATTATAATTGATGATGAAATGCACAAATGTCATGCTCCTTGGTCTTCTCCACACACTTTTGTGTATTTTAACATCTCCCTCTGCAGCTCTAGCCATGTTTAATGCAGCTGGCTCCTATCTATGATATGAGAAGTAGGAGACACAAACCCTTTAACACTGTCTGCTTATTAAAATCCCCACTCCCCTGGCAAAGGTGACTTGCACCATGTAATTATTGCTATACCTCCTGACGACACCATGAGTaggtatttacagtatttatatacttaaaatgttttatttaggtTTCTTGAGTGGGTGGCTGTAATGGGAATAAAGTCCCCAACTTTGGTTGTTAGTGTGCTTTCTGTTGCACTGAGTTACATATTTCGAACACACTGCATGT

Function

GO:

id name namespace
GO:0050976 detection of mechanical stimulus involved in sensory perception of touch biological_process
GO:0016255 attachment of GPI anchor to protein biological_process
GO:0006508 proteolysis biological_process
GO:0034394 protein localization to cell surface biological_process
GO:0042765 GPI-anchor transamidase complex cellular_component
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0003923 GPI-anchor transamidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155193 lncRNA downstream 23254 15922204 ~ 15922456 (-) True G115061
TU155190 lncRNA downstream 24179 15918321 ~ 15921531 (-) True G115060
TU155189 lncRNA downstream 24725 15918321 ~ 15920985 (-) False G115060
TU155184 lncRNA downstream 99101 15843159 ~ 15846609 (-) True G115056
TU155182 lncRNA downstream 102617 15842750 ~ 15843093 (-) True G115054
TU155207 lncRNA upstream 77693 16031932 ~ 16032227 (-) True G115075
TU155339 lncRNA upstream 217234 16171473 ~ 16171811 (-) True G115175
TU155347 lncRNA upstream 220022 16174261 ~ 16174553 (-) True G115178
TU155348 lncRNA upstream 221119 16175358 ~ 16175706 (-) True G115179
TU155349 lncRNA upstream 221726 16175965 ~ 16177210 (-) True G115180
XM_039816257.1 mRNA downstream 325051 15616397 ~ 15620659 (-) True cldn1
XM_039815271.1 mRNA downstream 357826 15581618 ~ 15587884 (-) False bcl6ab
XM_039815272.1 mRNA downstream 358003 15580776 ~ 15587707 (-) True bcl6ab
XM_039815273.1 mRNA downstream 372570 15568830 ~ 15573140 (-) True fam78ba
XM_039816860.1 mRNA downstream 391741 15549860 ~ 15553969 (-) True imp3
XM_039815825.1 mRNA upstream 79043 16033282 ~ 16054068 (-) False zzz3
XM_039815826.1 mRNA upstream 79043 16033282 ~ 16053700 (-) True zzz3
XM_039816384.1 mRNA upstream 100020 16054259 ~ 16077214 (-) False usp33
XM_039816385.1 mRNA upstream 100020 16054259 ~ 16077214 (-) True usp33
XM_039816386.1 mRNA upstream 100020 16054259 ~ 16077213 (-) False usp33
XR_005640845.1 other downstream 532651 15412986 ~ 15413059 (-) True LOC120569143
XR_005640844.1 other downstream 533243 15412393 ~ 15412467 (-) True LOC120569142
XR_005640843.1 other downstream 533870 15411663 ~ 15411840 (-) True LOC120569141
XR_005640842.1 other downstream 534363 15411162 ~ 15411347 (-) True LOC120569139
XR_005640597.1 other downstream 641100 15290186 ~ 15304610 (-) False mfsd8l2
TU155326 other upstream 189921 16144160 ~ 16148121 (-) True G115164
XR_005640638.1 other upstream 228415 16182654 ~ 16201698 (-) True cc2d1b
XR_005640639.1 other upstream 228415 16182654 ~ 16201257 (-) False cc2d1b
XR_005640637.1 other upstream 228415 16182654 ~ 16201257 (-) False cc2d1b
TU155443 other upstream 376714 16330953 ~ 16335932 (-) True LOC120568735

Expression Profile