RNA id: XM_039815038.1


Basic Information

Item Value
RNA id XM_039815038.1
length 2682
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC120567934
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 1050897 ~ 1053660 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACAGGTTATTATTCTGCCTCACTGagacgacacacacactgagagacgGACGGTAAGATTTACCTTCAGACCAACACTTCCACTATGAGAGGACATTTACAAAAAGGAATATTGGGAACATTGGTACACTACCACTTCAAGTGATTTACAACAACAAAGACTCAAAGTGAAAGTAAGTTTGAGGGAACAGGGAGTGTCTGAGCTGTCTGCCTGCTGTGTTTTCTGCTTCACTCAGAGACTAAATGGCTTCCAGATTAGAGGAAGATCTCTGCTGTCCTGTCTGCCATGAAGTCTTTAAAGATCCTGTCATCCTGTCatgtagccacagcttctgtaGAGACTGTCTGCAGAGCTGGTGGACAGATAGACCGATAAGAGACTGTCCAGTTTGTAAGGAAAGATCTTTGTTTGAACCCCCTTTAAACCGGAGGTTAAAAAACCTGTGTGAGAGTTTCCTACaggagagagatcagagagtttcagaggctctctgcagtctgcactctgagaaactcaaactcttctgtctggaccatcagcagccagtgtgtgtcGTCTGCAGAGATTCAGAAAAACACTCCAAACACAGAATCAGACCCATCGATGAAGCTGCACGACAACACAAGAAGAAACTTCAGGAAACTCTGGAGCCCTTAAAGGAGAAGTTAAAGGTTTTTGAACAACTTAAAGTGAAGTTTGATCATACTGCAGAACACATGAAGGTCCAGGCCCGACGCACAGAGACCCAGATTAAGGATCAGTTTAAGAAGCTTCACCAGTttctagaagaggaagaggaggccaggatggctgcactgagggaggaagaggagcagaagagtcagaggatgaaggagaagatgaaGGCTCTGGGCACagagatagcagctctttcagacacagtcagagccacagaggagcagctgagagctgaagatgtctcattcctgatcaactacaaggctgcagtggaaagagtccagcagcgccccctgctggaggatccacagctgctctcaggagctctgatagacgaggccaaacacctgggcaacctgagcttcaacatctggaacaagatgaaggacatggtctcctacactcctctggttctggacccaaacactgctcATCCATATCTCATCCTGTCTGAAGATCTGACCAGTGTGAGACTAGGAGGAGAGCTACAGCAGCTTCCTGATAATCCAGAGAGGATTGATTCATTATGCTCCCTCTCTgtcctgggctctgagggctttAACTCAGGGACTCACAGCTGGGTTGTCGAGGTTGGAGACCATACATTCTGGTCACtgggtgtgttagcagagtctgTTCAGAGGAAGGGAGACATATGCTCTGGATTATGGAGAATAGGGTTCAGTTTAGCTGTTTTATCTAGAGCATTGTCTCCATCAGGTCCAGACACTGATTTCCTGGTGAATAAGCAGCTCCAGAGGATcagagtgactctggactggaaCAGAGGAAATCTGTCCTTCTCTGATCctgatactaacacacacatacacaccttcacacacactttcactgagaagATGTTTCCATTCTTTGAAACTGGGGGTGAACTGAAGGTTTCCCCAGTGAAGGTCTGTGTGACTGTAGAACAGAAATAGAAGAAGTCCATGTTTCAGATTTTGGTGGTGGGAGGGACTTCCCTTTGATTAtcaaatatatctttaatagGGCTCGGTACTGAATTTAGATACTTTCAGGCACTGATTGAATTTGGTCAGAAATCAAACTGCTACAAGCCTTCTAGGCTACTTCTACTTGGAGAGAAGTTAAATGTTTCAACCATTAATCCATTAACGTTGATTTAAGGCATTACTTTAggtaactatttcaactgttagctactttaacCGTTTCTCAAATAATTTAGCTAAatatgtgaactgtttagtcattacttttagctaaacTTCTGTGCTTGCTTGTTAATCAGTTTTCACGCTCTAACATAACCGCAACATgtagtgttcaggtgttacaggTGATGATGTAACTACGACATgtagtgttcaggtgttacaggTGATGATGTAACTACAACATgtagtgttcaggtgttacaggTGATGATGTAACTACGACATgtagtgttcaggtgttacaggTGATGATGTAACGGCCGGTAGGACACCGTTGCGTTGACTGTTCTGAACTGAAGCagtgcaaagcatcatgggaacaTGTTCTGAACTGAAGCagtgcaaagcatcatgggaacaTGTTCTGAACTGAAGCagtgcaaagcatcatgggaataTGTTCTGAACTGAAGCAGTGCATCATGGGAACATGTTCTGAACTGAAGCagtgcaaagcatcatgggaccATGTTCAGAACTGAAGCCGTGCATCATGGGACCATGTTCTGAACTGAAGCAGTGCATCATGGGACCATGTTCTGAACTGAAGCagtgcaaagcatcatgggaacaTGCTCTGAACTGAAGCAGTGCATCATGGGAACATGTTCTGAACTGAAGCAGTGCATCATGGGAACATGTTCTGAACTGGTCCTGTCCTAGTTTAAGTGTTGTGTTATCTGGTTTTAGTGTTGTGtggttgatttagtgttcatgtttatctacATTTGTTGGGTTGGGGGATTGCCTCAGGGCAGTGTCAATAAAATAGCTTGGAAATTAGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149671 lncRNA downstream 29462 1020463 ~ 1021435 (-) False G111133
TU149681 lncRNA downstream 64834 927923 ~ 986063 (-) True G111137
TU149693 lncRNA downstream 70437 980124 ~ 980460 (-) True G111147
TU149657 lncRNA downstream 153186 850061 ~ 897711 (-) False G111128
TU149707 lncRNA upstream 9354 1063014 ~ 1092881 (-) False G111156
TU149709 lncRNA upstream 9354 1063014 ~ 1063935 (-) False G111156
TU149712 lncRNA upstream 35440 1089100 ~ 1167159 (-) False G111156
TU149708 lncRNA upstream 35535 1089195 ~ 1165478 (-) False G111156
TU149733 lncRNA upstream 39786 1093446 ~ 1094637 (-) True G111172
XM_039814840.1 mRNA downstream 149701 895507 ~ 901196 (-) True LOC120567797
XM_039816971.1 mRNA downstream 202252 843808 ~ 848645 (-) True ccr9a
XM_039816947.1 mRNA downstream 211131 823052 ~ 839766 (-) True bfsp2
XM_039816949.1 mRNA downstream 211131 823533 ~ 839766 (-) False bfsp2
XM_039816419.1 mRNA downstream 373163 676331 ~ 677734 (-) True LOC120568738
XM_039816048.1 mRNA upstream 46404 1100064 ~ 1114180 (-) True LOC120568485
XM_039816343.1 mRNA upstream 66711 1120371 ~ 1136551 (-) False LOC120568681
XM_039816341.1 mRNA upstream 66711 1120371 ~ 1136543 (-) False LOC120568681
XM_039816342.1 mRNA upstream 66711 1120371 ~ 1136543 (-) False LOC120568681
XM_039816344.1 mRNA upstream 66711 1120371 ~ 1136543 (-) True LOC120568681
TU149667 other downstream 29462 1012819 ~ 1021435 (-) False G111133
TU149674 other downstream 40797 1008894 ~ 1010100 (-) True G111134
TU149680 other downstream 44972 1005071 ~ 1005925 (-) True G111136
TU149470 other downstream 201405 849182 ~ 849492 (-) True G110988
TU149406 other downstream 284597 754263 ~ 766300 (-) True G110957
TU149740 other upstream 46424 1100084 ~ 1114182 (-) False LOC120568485
TU149799 other upstream 253879 1307539 ~ 1314727 (-) False mfn1a
TU149800 other upstream 253879 1307539 ~ 1314727 (-) True mfn1a
TU149801 other upstream 253879 1307539 ~ 1314727 (-) False mfn1a
TU149819 other upstream 332468 1386128 ~ 1390487 (-) False dhx9