RNA id: XM_039815045.1


Basic Information

Item Value
RNA id XM_039815045.1
length 2944
RNA type mRNA
GC content 0.56
exon number 11
gene id LOC120567940
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 37209305 ~ 37230711 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGCCGTGGCTCTCTTGACTTCGGTCGTATTTCATTGGCAGTGTGGCCGCTCAGACCTCACACTCAAGGAAGGTTTTGTGGAAACTTGAGGACATGCTGCGTCTTCACCCACACCAAAACTTTGTGAGACCTGAAGAAAGAGCCGAGGAGTGGAGAATGAAGTGAAGAGTagcggagaggaagaggagaggaggaggagaagaacaGCCGTTCACTCTCATTGATCCAATATCGAGGGCTGGTGCAGTAAAGATGCGGGCTGCTGCCGTGGCTCTGACCGTGCTGAGTGTTTTCATCAGCCTGGGCCGCCTGTCTGCTCACCGGGCCAAACCAAACCAGACACAGAACCACAACAACAACGACACAAAAACTCCCAATCAAGAGACAGAAACCGAGACCAAGAACCAGCCGCACATCATCTTTATCCTCACAGAtgaccagGGCTTCAACGACATCGGCTACCACAACCCGACCATCAAGACTCCCACTCTGGACAAGCTGGCGGCGGAGGGCGTGACGCTGGAGAACTACTACGTTCAGCCCATCTGCACGCCGTCCCGCAGCCAGCTCCTCACCGGCAGATATCAGATCCACACAGGACTCCAGCACTCCATTATCAGACCCAGCCAGCCGAGCTGTCTGCCTGCACACATGGACACCCTGCCTGAGAGGCTGCGCCAGGCCGGCTACACCACACACATGGTCGGCAAGTGGCACCTGGGCTTCTACAGGAAGGCATGTCTGCCCACCAGAAAGGGTTTTGACAGTTTCTTTGGTTCTCTTACAGGAAGTGTGGATTACTACAGTTATGGGTCCTGTGATGGCCCGGGCCTGTGTGGGTATGATCTCCATGACGACGAGGGCGTGGCGTGGGGCCAGGAAGGGAAATACTCCACCACGCTGTTCACACAGAGAGCTCGCAAGATCCTGGAGAGTCACAAGCCCACGGACAGGCCGCTCTtcctgctgctctccctccagGCAGTTCACACTCCTCTCCAGATCCCCAAGTCCTACATCTACCCGTACCGCGGCATGGCCAACGTCGCCCGGAGGAAGTTTGCTGCCATGGTGTCCACGGTGGACGAGGCGGTCCGAAACGTCACCTACGCTCTGAGAAAGTATGGGTACTACCGGAACAGCGTTATCATCTTCTCCACCGACAACGGCGCCCAGCCCTTCACCGGAGGGAGCAACTGGCCGCTCCGAGGCCGAAAGGGTACGTATTGGGAAGGTGGAGTCCGTGGCGTGGCGTTTGTTCACAGCCCCCTGTTGAGACGCAGGAGACGGGTCTCCAAAGCTCTGCTCCACATCACCGACTGGTTCCCCACACTGGTGGGCCTGGCCGGGGGAAACACCAGCCAGAGTCCCGGCCTGGATGGTTTCGATGTTTGGCCCACCATCAGCGAGGGGAAGGAGTCCCCTCGTCAGGAGATCCTTCACAACATCGACCCTCTGCACAAACCCCCCACTCAGACCATGAAGTGGGACGTCAGCACAGAGCGGGCATCAGGCAAACCCAAAGGCCCAAAGaagccaaagaagaagaagatcctGAAGCAGAAACCAAAGCAGAAGGCAGCGTTCAGGTTGAAGACCACCAAGAAACCTCGAACGTTTTCCCATCATGCTGCTAAGCCTAAAGCCGAGCCCCTTCCTAAAGCCAAGCTTAAACCCGTCCCGAAATCCAAACTTAAATCCAAGACCAAAGTCTACCCTCAGAACCAGAGACCGTCCCATTATTATCCACATCTGAAGTCCCACTCCGGCAAGTCTCCGTCAGTGTCAGGAACATCCCGCCCTAAATCTCAGCCTCCCGTCCAATCACGTGTCAAGTCAAAATCCAGACGCAACACATCCCAGAACCTGTCCCGGGCAAGAACACCTCGACCAAAATCCAAGACACAGTCCAAGCTACATTTAAAGTCAAAGTCCAGGCGGACATTACCCCAACACCAGAACATGTCCCAGCCGGGGACGCCGCAGCCAAACCCCCGTCCCACTCCCCAGCTCGGTCTCCAGCCGGTGTGGGACGCGTCGGTCCAGGCGGCCATCAGAGTCGGAGACTGGAAGCTGCTGACAGGAGACCCAGGACACGGAGACTGGGTCCCCCCACAGGTACTTCCCACTCTCCCGGGACGCTGGTGGAACCTGGAGCGGGCCGCCTCGGCGCTGCCCAAACCCTCCACCCTAAAAAACGTCTGGCTGTTCAACATCACGGCCGACCCGTGCGAGCGCCGGGACCTGGCCGACCAGAGACCAGATGTGGTCCAGCGGCTGATGGCCCGGCTCGCCCACTACAACCAAACCGCCGTGCCGGTTTACTTCCCGCCCGACGACCCTCGAGCCGATCCCAGCCGGCACAGGGGGGCCTGGGTGCCCTGGGTGCACGGAGACGAGGGCGAGGAGGGGAAGTACCACGGAGTGTACAAGAAAgggaagaacaagaagaagaggaagaagcccAAGTGCCCGCTGTGCAAGCTGCAGGCGTTCTTTCTGAAACTGAACACCAGGATGATGTCCAATCGGATCTGAGGCGTCGACTCCAGCCGTGAAACCATTGTGTCAAAGACGTTGTTTTCCTAAAAACCAGGGAAAAGTGGTAGCCAGGGGAGTTAATTCCACTAAACATGTCCTTTCACTGGCTTCACTTTTCTACACGCTCCTCTAAAAATCAAGTCCAACCAGTTTACGTACTGTCACATATCTCATCTGAGGGGACACTGCCCAGATCATGTGTAAGACTTTCTTTCACTGActtttaaagggtcagttcactcAAACCACAACATGTTCTCTGACTTATCCCTTGTGATATCTGGCCATGCAGTAGAGCTGAAcgatttgggaaaaaaaatctaattgcgatttttctgccagatatagcctttttcacggcagacatgttgacatgtcatagtaggaaaagcacaggtgtatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162676 lncRNA upstream 8722 37199955 ~ 37200583 (+) True G120872
TU162660 lncRNA upstream 72555 37136359 ~ 37136750 (+) True G120860
TU162641 lncRNA upstream 118424 37089450 ~ 37090881 (+) True G120842
TU162630 lncRNA upstream 237867 36959931 ~ 36971438 (+) False LOC120568208
XR_005640684.1 lncRNA upstream 333911 36871351 ~ 36875394 (+) True LOC120568213
TU162681 lncRNA downstream 15527 37246238 ~ 37247868 (+) True G120875
TU162725 lncRNA downstream 64197 37294908 ~ 37297045 (+) True G120910
TU162729 lncRNA downstream 74183 37304894 ~ 37306014 (+) False G120914
TU162740 lncRNA downstream 108391 37339102 ~ 37342839 (+) True G120922
TU162741 lncRNA downstream 108391 37339102 ~ 37413196 (+) False G120922
XM_039815567.1 mRNA upstream 121862 36879918 ~ 37087443 (+) True LOC120568208
XM_039815569.1 mRNA upstream 353462 36855196 ~ 36855843 (+) True LOC120568211
XM_039815568.1 mRNA upstream 364655 36844011 ~ 36844650 (+) True LOC120568209
XM_039816078.1 mRNA upstream 461637 36737148 ~ 36747668 (+) True LOC120568506
XM_039816063.1 mRNA upstream 498493 36624332 ~ 36710812 (+) False LOC120568504
XM_039814685.1 mRNA downstream 367103 37597814 ~ 37598425 (+) True LOC120567716
XM_039815841.1 mRNA downstream 758854 37989565 ~ 38019068 (+) True LOC120568367
XM_039815840.1 mRNA downstream 781055 38011766 ~ 38019068 (+) False LOC120568367
XM_039816922.1 mRNA downstream 808370 38039081 ~ 38098246 (+) True LOC120569077
XM_039816923.1 mRNA downstream 808370 38039081 ~ 38098246 (+) False LOC120569077
TU162632 other upstream 190515 37010999 ~ 37018790 (+) False LOC120568208
TU162480 other upstream 802616 36406121 ~ 36406689 (+) True G120717
TU162479 other upstream 803532 36405240 ~ 36405773 (+) True G120716
unassigned_transcript_581 other upstream 959778 36249445 ~ 36249527 (+) True trnal-caa_4
unassigned_transcript_580 other upstream 966701 36242522 ~ 36242604 (+) True trnal-uaa_9
TU162730 other downstream 72183 37302894 ~ 37306014 (+) True G120914
TU162816 other downstream 781166 38011877 ~ 38019038 (+) False LOC120568367
unassigned_transcript_597 other downstream 966330 38197041 ~ 38197122 (+) True trnas-cga_7
TU162901 other downstream 1524973 38755684 ~ 38755931 (+) True G121058
TU163034 other downstream 2161261 39391972 ~ 39392776 (+) True G121171

Expression Profile