RNA id: XM_039815057.1


Basic Information

Item Value
RNA id XM_039815057.1
length 5350
RNA type mRNA
GC content 0.47
exon number 18
gene id clstn2a
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 28273667 ~ 28473545 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAGTGAAGGTCTCTCTACATTTCAGCTATCACTGGCGCTACCGACCAGTTGAAAACATCCTCGCGCTTGGGAGGTGATCCAGGATTTCTGTTTAGGAGAGGACGGGGAGACGTCAGCCACACTGCTCGACAGCCATGCAGATACTCGGGGTcccttttttgctgttttgcctCATTTGGGTCCACTCCTGCGCTCTCGGCGGAAAAGTCAACAAGCACAAGCCGTGGATAGAAACATCTTACCATGGTGTGATCACGGAGAACATGGACACGGTGCTGCTGGACCCTCCGCTGGTAGCTCTGGACAAGGATGCCCCGGTCCCTTATGCTGGGGAGATTTGTGCCTTTAAGATCTATGGTCAGGATGCTCCATTCGAGGCAGTGGTGTTGAATCGTACATCAGGAGAGGGAGTCCTGAAGGCCAGTAGCCCAGTGGACTGTGAGAGCCAGAAAGAGTATACCTTCATTATCCAAGCCTACGACTGTGGGGCCGGGCCCAGCGGGGCCGGCTGGAAGAAATCCCACAAGGCGGTGGTTCACATCCAGGTGGATGACGTCAATGAGTTCTGCCCCGTGTTTCGGGAGCCCCTTTACAAGGCATCAGTAACAGAGGGCAAAATCTACGACAGCATTTTGCAgGTGGAAGCTTGGGACCAAGACTGTTCCCCCCAGTACAGCCAGATCTGTAACTATGAGATCGTCACTGCAGGGACGCCATTTGCCATTGACCGCAatgGTAACATCAGAAACACGGAGCGGCTGAGCTATGACAAGCAGCAGAGCTACAAGATTATGGTGACAGCCTTTGATTGTGGTCAGAAGAGAGCAAAGGAGGATGTGGCTGTGCATATTGATGTCAAGCCTGTCTGCAAACCTGGATGGCAAGGTTGGAACAAGCGAGTGGAATATGAGCCAGGGACTGgaagcaggcagctgtttccCAAGATGCACTTGGAAACGTGTGGAGGTCCTCTCTCTGGCGTGAAGGCGATGGTAGAGCTACAGACCAATCACATCGGGAAGGGCTGCGATCGGGAAACCTACTCTGAGAAGTCTCTGCAAAAACTCTGTGGTGCAGCATCAGGCAGCACCGACCTCCTTCCTGCCCCCAGCTCTTCCTCCAACTGGACGGCGTCTCTGCTGACTGACAGTGGCCGCGACAGCGACCTTATCTACAGATTTGACGGACATCAGGCTGCTAATGTTCCAGATCATGTGGTCCCCCAAAACCTGACCGACCAGTTCACCATAGCAACGTGGATGAAACACGGGCCCAGTCCAGGACTCAGAGCTGAGAAGGAAACCTTACTGTGTAACTCTGACAAGACTGAAATGAACCGCCACCATTACTCTCTGTATGTTCACAACTGCCGCCTGGTGTTCCTGCTCAGAAGAGATTTCACTCAGGTCGACACTTTCAGACCCGCAGAGTTCCACTGGAAACTGGAGCAGATCTGTGACAAGGAATGGCACTATTATGTGATCAACGTGGAGTTTCCTGCAGTGACCCTATTTGTCGATGGTGTGACCTATGAACCCTACCTGGTGACGGATGACTGGCCGATCCACACCGCAAAGATTGATACGCAGCTGACTGTGGGCGCCTGCTGGcaagGTGGTGAGGTAGGGACCCCGAGGTTCACCCAGTATTTCCGTGGCAGCCTGTCAGGTCTGACAATCCGACCAGGCCGCATTGAAACCCAGAAGGTTATTTCCTGTTTGCAGGCCTGCAAAGAAGGCCTTGATATCAACTCCCTTGAAAGCCTCGCTAAGGACATCAAGTTCCATTTTAACCCTGCTCAGTCTGTGCTGGTGGTGGAGGGAGAGGATCTAGACAGCATCAACACAGCCATGACTAAGGTCTCCTACATTAACTCTCGCCAGTTCCCTACACCAGGCCTCCGACGGCTACACATCACAACCACAGTACAGTGTTTCGGCGAGGACACGTGTCTCTTCATCCCAGACATCAAGTCAGTGGTTATGGTCCTGCCACCCAGTGAACCGAGAATCACCATCACAGGATCTAATCGGCTCGTCAGGCCTGCCAGTGACCTGCGGGGCCCGCTGGGTGTGGCACCCTTCAAAGAGCTTCACATCACCAGCACAGTAATGAAGGCAGACAGCTTCGGTGGATCCCGCAGACCAGGTGTGATGGAGGTGATGCATAACCTGGACTACTGCGATGTGCTGGTAATTGGGGAAGAACTGAAtcctgagagagagagtctgGAGATTCATCACAGTGTGTTGCTGGGAAAACACCTGGATGCCACCAACTCCACCTCTGGAATATCAATATATGGTGTGGACTCCATGGCTCACTATGAGCAGGCACTGAGACAGGTGCGCTACAGGAACTGGCGACCTGCCACCCTGAGCGAGCGAAGGCTCAGACTCACTTGCTCTGAACTCAACGGGCGTTACACCAGCAATGAGTTCAATTTGGAGGTCAGCGTTCTTCACCACTTGGCACCTGTGGAACATGTCAATCATATGGCTGTTCAACCTCAGTACATGAGACCCGTGCATCACCCACTCATGATACacactctcaacacacacatgtCAGGAGCAGCACCTCCAGCAGCCACTGCGGTTATCGTGGTCTGTATCGCTGCCCTGGTGGTGATTGTGGTGATCGGAGTGTACAGGATCCACGCCACACATCAGGAGGGGTCCAGAGAAGACGAGGACGAGGCCAAAGACACCGAGGAAGACTGGGACAACTCTGCACTCAACATCACTGTCAACCCCATGGAGAACGTAGGAGCTCAAGCATATGATGAGGAGGTAACGGAAGAAGTAcatgaggaggaagaagaagaggaggaacagAACAGTGATGAAGATggcgaagaagaaaaagagagagaagaggtgaaAGGGAGGAAGCAGATGGGAAAACTAGAGTGGGACAGTTGCTCCATAACATACTGACCACACGTCCATAAAGAGATCCCTGCACACATAATCACTCTTtacgtgtctgtctctctcgctttgacagacacacacaagacaggcCAAAATTCAATACTTTacttgcacacacatgcataacaTGTGTTGGTGAGGATGTAGGAGTGCAaacacacaggactttcattCAGCAGGTCAGGGTTCAAGTCCAGTCCAACCTCACGagtcaaagtcctgtgttgcTGCGTTCCTCCTTTCCAgttatgtagtatttggtttaaaagcctttctGTGATTTTTGAAGGTAGAAAGTATTTATGCGCTTCTCCTTCCTCCCCATGCACTCACATGTTATTGACTGCCGTAATGCATTTTGCCTGTCTCAACCTCATTTGTTATTAGCGGTTGTTGTGCCACCTTGTTGTAAAAACTTCCAAGTTAACGTCAAAAAggttattccccccccccccgaacaTATGTAAATACTTATGCACACATGTTATGCAGTGGGCGCAAATTAAgtatatgtatgtgcaagtgaagtattCAATTCTGGCCTaggcgcgcgcgcgcgcgcgcccacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactaaatgacATCTCCCTCTGCTGGACAAATTCAGAGCTACAGAATGAGCTGCCGTCCCACAGTGCTTGAATACATCATCTGTACTTAGAATGTTATTCAAATCAGTCAAGGAATCAAAAATCAAACAAGCACAGTAATCTCTATGTGCGGAGTTAAAGTTTTGCtgataaaaataaatctaaattcTTGAATACAGCCACACAAATTCTCAATTTCTTACAATTTTATCCCAACATTTATTATGTGCAATTACATGTCCTCATCTTACTTTCATATTTATGATTTCAACAGATTGTCTGCAAGACGGTGAGTTATTAGCAGATTATCCACAAAATGTATCCATATACATATTGATTAGTTAATGTATCCATAAACCTTTTAAAACATAATTCCCTTTACCTTTATAGTAGGTATAACATAGCTGTACTGTCACTCAGTGTATGTCTCACCTTTTCATCTGTGTGAAGAGTGTTGTGTTTCTCTAAGTGGATCACAGTGCCGTGGTTCTTTGGCCCGGACActaaagagaaacaaaataTGGATATGTCATCTCTGACCATAAACATTCCAAATTTTTCCTGATTTATATACAAAGCAGAATCATTAACCGTTTAATATCTTCCATCTTTGCTTTTCTCAAAAGTATTTAAAAGCTACACCGATCACTGCTCTATCAGCTAATGACCTGATGGAAGCAGTTGATTCGTAGTTAAAATACTCCTAGAAACAAAAGAGCAGTTAGTTTGCATATGTCTGTGTACCAAATCTAGCCATACTGTGACCTATTGTAGCTTTTGCTGTTTAGGGTTAGATCAGTTATATCTTTTTTCAACAGATGTTACTGTATTCTACCGATATCCTGTCTTTCCATTCTCTTTGAGCCCTCTATGCAATTATGGGCCCAGTCTAAAGGAACAGTAATACCGAAAATACTggatcctacacttcccataatgcaattcAGAAGCCTCTCTTTTAGATCTGGCAAGCAAACGCTTTTTACTCTCCAtgcttccctctctcccttttaaTGCACAGTTTCTGTTAAAGATTATCAAAGATACCCCTGATTAAATCTCAGAGGTTAATTCTCAGACTTGACAGATGACAATTATGCTTTCACTGACAGAGTAACGCAACCTTTTTCACGCGTAAATTGAACTTAATGTGTTAAATGGGGGAGTGCTCCACTGCTCTAAATTGTGGCGAAAAGAAGCCGAGTGATGGTTTCTTTCTGGTGTTATCAAGTCGCTGATCCTGCACAGCTTCACCACAACTACAAGCAAAACTGGAAACTCCATTGGTATCGATTCCATCTTGTACCATAGTTATTGCAGATTACGTGAACTTGTTTAGACAAAGTTTAATTCCATGAGTTGGTCTACATTCAAATGATCTTAAAGTAACTCCTTTGACATTCCCATTTCTCGTCTCACCTGTTCACGTCCGCACGGTATCAGTGACGATTACCTGATACGTCTCCTATTCACTCGTCCCTCCCTCTGTTGGCCTTTAAGCACCTGTGATTGTGATGTCATCATTGTGAAACAACTGCCTTGTTTCCCCTCGTCCCGTTGTCATATTGTGCTTCTGAAAgattaaagagaaaaaaagaattcttttacatataaaaacaaatccTGTAAAAATGTTCAAGACAGTTATTTTATATATccgtttctttttctttttgtaaacaaaatggttgggatttctctctcttcagtgGTTATCCCACTGCTTTCTGTAAATTGACCAATAAAGACTTGTTTTAGACTCTA

Function

GO:

id name namespace
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K22660 CLSTN2; calsyntenin 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159927 lncRNA upstream 12583 28260872 ~ 28261084 (+) True G118641
TU159790 lncRNA upstream 59559 28209715 ~ 28214108 (+) True G118554
TU159816 lncRNA upstream 95326 28176487 ~ 28178341 (+) True G118575
TU159792 lncRNA upstream 114078 28156973 ~ 28159589 (+) False LOC120568082
TU159804 lncRNA upstream 154043 28119267 ~ 28119624 (+) True G118564
TU159933 lncRNA downstream 6484 28480029 ~ 28480339 (+) True G118646
TU159934 lncRNA downstream 11725 28485270 ~ 28485708 (+) True G118647
TU159968 lncRNA downstream 149809 28623354 ~ 28623572 (+) True G118676
TU159969 lncRNA downstream 182113 28655658 ~ 28655891 (+) True G118677
TU159974 lncRNA downstream 204860 28678405 ~ 28678638 (+) True G118682
XM_039815282.1 mRNA upstream 69938 28192915 ~ 28203729 (+) True pcyt1aa
XM_039815283.1 mRNA upstream 69938 28193538 ~ 28203729 (+) False pcyt1aa
XM_039815281.1 mRNA upstream 103697 28156801 ~ 28169970 (+) True LOC120568082
XM_039814618.1 mRNA upstream 169209 28086817 ~ 28104458 (+) True LOC120567659
XM_039814528.1 mRNA upstream 248421 27960902 ~ 28025246 (+) True dnah9l
XM_039815387.1 mRNA downstream 407100 28880645 ~ 28893212 (+) False LOC120568119
XM_039815388.1 mRNA downstream 407509 28881054 ~ 28893212 (+) False LOC120568119
XM_039815386.1 mRNA downstream 407509 28881054 ~ 28893212 (+) False LOC120568119
XM_039815384.1 mRNA downstream 409278 28882823 ~ 28893212 (+) False LOC120568119
XM_039815385.1 mRNA downstream 409281 28882826 ~ 28893212 (+) True LOC120568119
TU159791 other upstream 114078 28156973 ~ 28159589 (+) False LOC120568082
TU159680 other upstream 663949 27602024 ~ 27609718 (+) False LOC120568838
TU159378 other upstream 1387637 26883559 ~ 26886030 (+) True G118234
TU159241 other upstream 1503756 26765492 ~ 26769911 (+) True G118149
TU159178 other upstream 1673595 26590830 ~ 26600072 (+) True prkab2
TU160295 other downstream 1494868 29968413 ~ 29969850 (+) False LOC120567689
TU160411 other downstream 2095850 30569395 ~ 30574881 (+) False LOC120568595
TU160502 other downstream 2697672 31171217 ~ 31196233 (+) True G119114
TU160516 other downstream 2725415 31198960 ~ 31200014 (+) False G119123
TU160672 other downstream 2986319 31459864 ~ 31460908 (+) True G119257

Expression Profile