RNA id: XM_039815058.1


Basic Information

Item Value
RNA id XM_039815058.1
length 1206
RNA type mRNA
GC content 0.47
exon number 4
gene id rbp1.1
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 28255245 ~ 28259903 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCGGGTTGTGCACTCAGGCACAAGTAGCCGTCCACAGTGGACCTCGTCATCATTCACTAGGAGTAGGGAAAGCAGCAGAGCAACAAACAGCCAACATGCCAGCTGATTTGAACGGCTATTGGAAAATGATTTCCAATGATAACTTTGAGGAGTATCTGAAGGCTCTTGAAGTAAACATTGCCATCAGGAAAATCGCCACCTTGTTGAAGCCTGACAAGGACATTGTCCACGATGGGGACCACATAATCATCAAAACCCTCAGCACCTTCAAAAACTACAACATGGACTTCTATGTGGGCAAAGAGTTTGAGGAGGATCTGTCTGGAGTGGATGACAGGAAATGCATGACCACCATCAGCTGGGAGGGAGACAAGCTGGTGTGTGTGCAGAAGGGAGAGATCGGAGGAAGAGGCTGGACCCACTGGGTGGACGGAGATGAGCTTCATCTGGAGCTGAGAGCTGCAGGAGCTGTTTGCAAGCAGGTCTTCAAGAAGACCTAAGCTGGCTCTTATTGGACGAGACGGTGTCCCCCGGCTGACGTCGGCTTACAGAGACGCCCAACTCCCATGCCTCTGACGTAGCATCCAACTTTCCCTTTGGTCATTTGTACATCTCTCCATGTGTCCATCTACCCATGTGATTTCCGTTATGACTATCATTTTCATCAATACTGTTGCCAAAGCCAATTCAAAGGGGCGGGGCAGTGTCTATCATGTAACATCACAAAATGCAATAATGTAAATATGTCTCAGGGCAAGTGCTCTTTTAATTACCAAGTTTAGATGTGTTGGACACATGCATACCGCTACTGTAGGTGTAGCTGATCTGACAGTTGAGCCAGATTGATGAAGTAACGGAAGACAGTGAAGAGAAGAGAGCAGTGGGTTCATTTAGTTCTTTGAATCATTGCTGTGGATGGAAAACGAtgaaaatctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagggctGTAAACTTCTTCGCTACGGATGCTTAGTCTCAAGAATGGATATCAAATGTGATGTGTGTATTTATCCCTCCCAATTCGTTTGGGAACGTGGCATTGGTAGTGAAatgaatcaatcaataaagTAAACCGTGCTCAACAA

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0005215 transporter activity molecular_function
GO:0008289 lipid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159916 lncRNA downstream 49004 28205711 ~ 28206241 (-) True G118636
TU159912 lncRNA downstream 54694 28200137 ~ 28200551 (-) True G118632
TU159884 lncRNA downstream 106988 28146370 ~ 28148257 (-) False metap1d
TU159885 lncRNA downstream 110211 28144428 ~ 28145034 (-) True G118613
TU159867 lncRNA downstream 155435 28095023 ~ 28099810 (-) True G118608
TU159956 lncRNA upstream 211064 28470967 ~ 28473620 (-) True G118668
TU159959 lncRNA upstream 221736 28481639 ~ 28481897 (-) True G118671
TU159970 lncRNA upstream 396758 28656661 ~ 28657022 (-) True G118678
XR_005640662.1 lncRNA upstream 438191 28698094 ~ 28699197 (-) True LOC120568122
TU159990 lncRNA upstream 483057 28742960 ~ 28743235 (-) True G118698
XM_039815289.1 mRNA downstream 6158 28239490 ~ 28249087 (-) True copb2
XM_039815290.1 mRNA downstream 16728 28221880 ~ 28238517 (-) True LOC120568087
XM_039815288.1 mRNA downstream 33841 28206718 ~ 28221404 (-) True LOC120568085
XM_039816396.1 mRNA upstream 239044 28498947 ~ 28590144 (-) False LOC120568715
XM_039816397.1 mRNA upstream 239044 28498947 ~ 28571481 (-) False LOC120568715
XM_039816395.1 mRNA upstream 239044 28498947 ~ 28550360 (-) False LOC120568715
XM_039816399.1 mRNA upstream 239044 28498947 ~ 28550360 (-) True LOC120568715
XM_039815566.1 mRNA upstream 333435 28593338 ~ 28613393 (-) True LOC120568207
TU159738 other downstream 536486 27717551 ~ 27718759 (-) True G118524
TU159739 other downstream 540855 27713467 ~ 27714390 (-) False G118524
TU159721 other downstream 579885 27670976 ~ 27675360 (-) False LOC120568986
XR_005640672.1 other downstream 1430675 26819838 ~ 26824570 (-) False cirbpa
TU159298 other downstream 1589293 26661621 ~ 26665952 (-) True G118175
TU160079 other upstream 726188 28986091 ~ 28986319 (-) True G118764
TU160179 other upstream 1160476 29420379 ~ 29420652 (-) True G118856
TU160248 other upstream 1384460 29644363 ~ 29649792 (-) False LOC120567741
TU160542 other upstream 2604343 30864246 ~ 30865494 (-) False LOC120568929
TU160545 other upstream 2604343 30864246 ~ 30876080 (-) True LOC120568929

Expression Profile