RNA id: XM_039815073.1


Basic Information

Item Value
RNA id XM_039815073.1
length 3873
RNA type mRNA
GC content 0.41
exon number 2
gene id LOC120567957
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 6165148 ~ 6169113 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAATGTATATAAGGTAAACACCTCCATGAGGAACAGACCCTCAGTTTCTATGCCTCTATTTGTTAAATCTTACAACTTCATTAATGACCGAACATTTCCTATGAGTCATGTGTTAACTATGTTCATATAGAGAAAACACACCCTGTATCTGTCGAACCGCTCCTCTTTCTGGAATGAAGGTAGCAAAGCATGTAAACCCCTCCTTCTTTGCTGATCTCTCTGACTAGTCCAAATATTTACTTGTTCCCTCCCCTTCACAGATCTGCAGTTTTAAGATGGGTGAAGTCAGAATGTGGTTTAGTGAGAGAGCTGGCAGGCTATATTCACTGCAGCTTTGCAACTATGAAGGAAGCAGAATAGATTTTGTTCCTGGGTAAAACGTTTGACGGTTTATGTGAAACTGTCATTAGCTGCCAGGGAGGTACAATGGCGCAGAAAGGAGTTAGTCTGGACAAGGACACTATTTCTTGTTctatctgtctggatctactgaaggatcctGTGACTACTTcctgtggacacagctactgcatggACTGTATTCAAGGCCACTGGGACAAAGAGTATGAGAAGAAAATCTACAGCTGTCCTCAGTGTAGAAAGACTttcacaccgaggcctgtcctgctgaaaaacaccatgttatCAGATTTAGTGGAGcagctgaagaagactggactccaagctgctcctgctgatcactgctatgctggagctgaagatgtggcctgtgatgtctgcactggGAGAAAACTGAAAGCCCTCAAGTCCTGTCTGGTGTGTCTGGTCTCTTACTGTGATCAACACCTTCAGCCTCATTATGACTCCTCTGCATTtgagaaacacaagctggtggagcccTCCAAGAATCTCCAGGAGGACATCTGCTCTCAtcatgatgaggtgatgaagatgttctgccgtactgatcagcagtgtatctgttatctctgctctgttgatgaacataaaggccacgacacagtctcagctgcagcagaaaggactgagaggcagaaagagCTTGAGGTGAGTcaacaaaacataaagcagagaatccaggacagagagaaagatgtgaagctgcttcaacaggAGGTGGAGGCTATCAATCGCTCTGCTGATAAAGTTGTGGAGGACAGTAGGAAGATCTTCACTGAGCTGATCCGTCTCatggagaaaagaagctctgatgtgaatcagcaggtcagatcccagcagaaaactgaagtgagtcgagtcaaagaggttcaggagaagctggagcaggagatcactgagctgaagaggaaagacgctgagctgaagaagtTCTCAGATACAGAGGATCACACCCAGTTTCTGAAAAACTACtcctcactgtcaccactcagtGAATCTACATCCAGCATCAATATCCGTCCTCTGCGCTACTTTGAGGACATGACAGCGGCTGTTTCAGAATTCAGAAACAAACTACAATATGTTCTGAATAAAAAATGGACAAACATCTCCCTGGGTGTGTCTGAAGTTGATGTTTTGCTGCCAAATCCACAATcagagcccaagaccagagctgaattcttaaaatattcacatgaaatcacactggatccCAACACAGCTCACAGACagctgttattatctgaggggaacagaAAAGCTACATTCATTGAAGAACATCTGTGTCTTTCTAATCACCCAGAACGATTCACTTATTGGCGAGAGGTCCTGAGTGACGAGAGTCTGACCGGATGTTGTTATTGGGAGGTGAAGTGGAGAGGGATAGGAGTTTCTGTTGCAGTCGCATACAAGGATATCAGCAGAAGAGGGAGCTCGGAAGAAGGTCCTGTatcctccagagtaggagtgtacctggatcacagtgcaggtactctgtccttctacagcgtcactaaaaccatgactctcctccacagagtccagaccacattcactcagcctctctacGCTGGACTTTGGTTTTATTGTTATGGAGACACTGCTGAGTTCTGTAAACTCAACTAGACAGTCAAATCACTCAAGGGTTAAACTCTTTGTTTCcacttttacatttattttgtctCAATGTTAGTCGCAGATTGTTCGTCGGGGCATTTCTTCACTGCAGAgatcagctgtcaatcaaacattaTGGGTGGTATTTTGCCGATAGTGGGAAGATCTTCACTGAGCTGATCCGTCACTCCtatgtgaagcagcaggtcagatcacAGCAGAAAACTGAAGTGAGTCAAGTCTGAGGAATACTTGACTAAAAaccctgctttgaaatatttcaTTTCTCTACTTGTATATACTCCAGTTAAATGCTCATTTGGCAGGTTTATCAAGTGTAGTATTCCAGTAAATGCACTTAAGTACTTTCCATATGTTTAAAAGTAGGGTGCCTCAAACTGAACTTTAATCTTCTATCTCACTCCCTGTCAGCTATTTGCACATATTAAGTTCTCCACTAGAGGTCCCTCTCCTCAAATGTATTGCATTATCATTATACTCGAATGCTTTGCTGCCATTTACAACACACCTAAGGGGTGAACTGGAGTCTAAATGGGAGAAAATCCCTGCAGCAGGTTCTAACATCTGGTGGAAAGACTATAACCAGATGAATGGAGACGGTTGGAGCAGCACAACATGTTCTACAATTACATGGAGTGTCATTATTATACTTTGTTTGGGGGTCTGCATACTTTTGGCCATATGTGTATGGTATGTCGACATCAGGACACTTTGCAGCaacaaatgtgtaaaaaaaactacttaaatacttattataaatatatatagtaaaTATAATAGTTGGTTTTATTCAAATAATCTTTTGAGTTGCTTATGAAATTCTTTTAAATAGCTTTTTGATATTTTGAACTGTCAAAGACCTGGAAGAAATGCATGTATGTGCCTTTTATCATTATCAAATATATAATAACAGAACAGACACTGTTTTCTGTAGTTGATCAATATTACTTTTGCTGCATGATTTGATGAATTGATTTTTTCCATTTACTCACAGATTATTAGTTCTTGTTATCTTCAGTTTGAGTTGAAAGTTTTGGATTGCCATGATGGTCTGGCTGCTGCAGGTACTTAAGACTGTTTCATACTTCTCATTAGAGCCTGACCAAAAAAATCAGCCATGTTGTAATGTACATTATAAACTGTGTGAAGTATTTATCAATACAATCATAACTTGATGTATAAGACACattattttctttgtgtgtgtgtgtgggctgtcATTGTCATACTGTGATGGTGTTTCTACAGACAAAGAAATCACTCCAGTTCACAGATCTTGTgaacagatcttttttttttaaactacttttGAGTACCGTacacgtgcagtttagtgtcccaaattattttccaaaaattgATTGTCCCAAATAATGAGGGTCTTAAAGTGAgacaggttatggttagggttattaattaattgattaattaaggacattgtatggggGATTTGGGACACTTTTGACTGTCGCTGAGGCCAAAAATTGGGAAGAAGTCCACTTCCATCTTTTCAATTACACAGATTTTGGGGATATTTAGCCTATTCATATATCTCattgcactgtaacttttttcTAGCTATTCTTTTTTTGCTAATTAGTTATCCTTTATTTAATACTTAAACCCTAGTTATGTGTGTTTTATAGTggcttgtgtttgttttatgtgtatttatagCCTAGTGGCCATGACTAAATCAGAAGGGATTGCGTCCGGCCAattgactgtaaaaataatcatCGAAATATACTCTGTTTTAGTCTatgctttcctctctctctctctctctttgaatGTAGGTCGGCACctaatctcagctcttttaaatcaaggctgaagacctttctttttaac

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151527 lncRNA downstream 49004 6113462 ~ 6116144 (-) True G112381
TU151530 lncRNA downstream 59331 6082641 ~ 6105817 (-) False G112383
TU151529 lncRNA downstream 59331 6104799 ~ 6105817 (-) True G112383
TU151484 lncRNA downstream 171375 5922747 ~ 5993773 (-) True G112352
TU151460 lncRNA downstream 373385 5774413 ~ 5791763 (-) True G112332
TU151626 lncRNA upstream 178222 6347335 ~ 6347853 (-) True G112453
TU151627 lncRNA upstream 178222 6347335 ~ 6347853 (-) False G112453
TU151638 lncRNA upstream 187685 6356798 ~ 6357990 (-) True G112460
TU151639 lncRNA upstream 188966 6358079 ~ 6359329 (-) True G112461
TU151640 lncRNA upstream 190359 6359472 ~ 6359952 (-) True G112462
XM_039816327.1 mRNA downstream 86311 6077151 ~ 6078837 (-) True LOC120568672
XM_039815247.1 mRNA downstream 102156 6060725 ~ 6062992 (-) True LOC120568053
XM_039816133.1 mRNA downstream 118896 6045322 ~ 6046252 (-) True LOC120568550
XM_039815245.1 mRNA downstream 182610 5977281 ~ 5982538 (-) True nol7
XM_039815240.1 mRNA downstream 248008 5888027 ~ 5917140 (-) True LOC120568045
XM_039815076.1 mRNA upstream 3168 6172281 ~ 6178886 (-) True LOC120567959
XM_039815074.1 mRNA upstream 6460 6175573 ~ 6178577 (-) True LOC120567958
XM_039815075.1 mRNA upstream 7619 6176732 ~ 6178577 (-) False LOC120567958
XM_039816825.1 mRNA upstream 87187 6256300 ~ 6283498 (-) True LOC120569024
XM_039816826.1 mRNA upstream 87187 6256300 ~ 6283497 (-) False LOC120569024
TU151454 other downstream 312701 5793163 ~ 5852447 (-) True G112328
TU151456 other downstream 312701 5793163 ~ 5852447 (-) False G112328
TU151457 other downstream 419067 5740645 ~ 5746081 (-) False LOC120568546
TU151299 other downstream 496461 5664004 ~ 5668687 (-) True G112233
TU151058 other downstream 1881065 4267538 ~ 4284083 (-) True G112046
XR_005640645.1 other upstream 5443 6174556 ~ 6175551 (-) False LOC120567959
unassigned_transcript_509 other upstream 31549 6200662 ~ 6200743 (-) True trnas-uga_1
unassigned_transcript_510 other upstream 36279 6205392 ~ 6205473 (-) True trnas-cga
unassigned_transcript_511 other upstream 37213 6206326 ~ 6206407 (-) True trnas-cga_1
unassigned_transcript_512 other upstream 39377 6208490 ~ 6208571 (-) True trnas-cga_2

Expression Profile