RNA id: XM_039815080.1


Basic Information

Item Value
RNA id XM_039815080.1
length 2782
RNA type mRNA
GC content 0.47
exon number 12
gene id wls
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 33768879 ~ 33809676 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAATGCGGTGGCGCGCCACAGATCTTTCCCCGGTCTAGTGTTGGCTGTTAGGGGATAACGCTGAGTGCTATACGGTCATGTGATTCacgtttttttccctttcctcctTCGAAGTTGAAAGGCAGGAGCAGAGCGGTGGAGGGGCCCAGCTTGCTTTCCTACTGGTCGTGGATGCAACGTTTTCGTCCCTATTCCACCACATTATTGCTTGTTTCTCGCTCGGTGTGATATTTTCACTCCAACCTTTTCCTTCGCAATGGCGGGGGCTATTATTGAAAATATGAGCACCAAAAAGTTGGTGATAGTGGGAGTTACTCTGCTATTGTTTCAGGCGTTTGCCTTCATGGTCGGCGGTTTAATTGCTCCCAGCCCCACCACAGCGGTCCACTACTTGGCCACCAAGTGCGTGGACACAACCAAGCACCGACAGGAAACCAAGTGGTTCATGCCTTGGGGTCCTAACCAATGCGACAAGATCCGGACCTTCGATGAGGCCATGGCCAAGAAGATCGAGGCCAACAACATTGTGTTTGCTGTCCACATTCCTCTGCCTAACAAGGAGATGAGCCCCTGGTTCCAGTTTATGCTGGTCATCCTGCAGTTTGACATCGCATTTAAGATGCACAACCAGATAGAGGATGGATCGTTGGCCACCATTGACGTGGGCCTGGCCTACAGAGACGACACGGTCAGCGAGTGGACAGAGATGGCTCACTCCTACGAGCAGAGGAAGCTCACCTGCAACTTCACTACTGCCAAGACCTTTGAGAACGAGGGGCGTTACTATGAGTGTGACCTGCTGCCTTTCATGGAGGTCGGCAGCGTGGCCCATAAGTACTATCTACTCAACATCCGCCTGCCCGTCAACGAGCGCAAGAAGGTCAATGTGGGGATCGGAGAAATCAAAGACATTCGTCTTGTTAGCATCCACCAGAATGGAGGCTTCACCAAAGTGTGGTTTGCCATGAAGACATTCCTCACACCGAGTATCCTCATCATCATGATCTGGTACTGGAGACGGATCACCCTCATGAGCAGACCCCCTGTGCTGCTGGAGAAGGTAATCCTCGCTCTGGGCATCTCAATGACATTCATCAACATCCCAGTTGAGTGGTTCTCTGTTGGCTTCAACTGGACCTGGATGCTGCTTTTTGGAGACATCAGGCAAGGCGTCTTCTACTCCATGCTGCTCTCTTTCTGGATCATCTTCTGCGGGGAGCACCTCATGGACCAGACCGAGAGGAACCGTTTCTCAGTGTACTGGAAGCAGGTCGGGCCCATTGTGTTTGGCTCCTTCTGCCTTTTTATCTTTGACATGTGTGAGAGAGGGGTCCAGCTGACAAACCCCTTCTACAGCATCTGGGCGTCTGATGTAGGAACGGAGCTTGCTATGGCATTCATAATTGTGGCAGGGATCTGTGCCTGTCTttacttcctcttcctctgcttcATGGTTTTTCAAGTCTTTCGCAACATCAGCGGTAAGAGGACGTCCCTGCCCGCCATGTCCAAGGCCAGGCGGCTGCACTATGAGGGTCTGATTTTCAGGTTCAAgttcctcatgctggtcacttTGACCTGTGCTGCCATGACTGTCATCTTCTTCATCATCAGTCAGGTGAATGAGGGCCACTGGCACTGGGGAGAGCACACGGTGCAGGTGAACAGCGCCTTCTTCACCGGCATCTACGGCATGTGGAACCTGTACGTCTTCGCCATCATGTTCCTCTATGCGCCGTCTCACAAGCGTTACGGAGACGAGCAGTCGAGTGGTCAGTGCATCACTGGAGATACCGGGGGAAACAGTGGAGAGGACATCCAGCTGACTACTACCATTACCCATGTGGATGGCCCCACTGAGATCTACAAGATGACTGGCAAAGAGGCCCAGGAGTAGATGTCCCACTGTTATTAAGACTCGCCTCTACTACCTACTGCTCCAACCATCCCCTCCCTCTTATATATGTAATTCTCTTCACATCCTCCAGCTCTAATACAGCATAAAACCCACCCAGCTTGCATGTAACCTACCAGTCCCACAGTTGTACTGTTCTCTTCCAGCATCAACCCCTCAGCTGTGTGACTTGTTTCATGCAACCGGGTTCCCGATCGTATCTCTAAAGACTGGAATATTATCAACACTCCTAACGGTCCTTTTCATTTCACGGTggacatttttttctcttcttacaTTTCATACTTTATGTaaactatgatgtttttgttaatgTTGCACAATGCTTTTGACACCAAAAGAAAGAGATTAGAGTGGTCAGAAGTTGCATTTGGCAGCCGTCAAGACTgtttttaaaatacagtgtGGTTAAAATAAATCATTTCTAAAGACCTAGGCTTTTGACAAAGATGGGCAGCAAGATTTTGTGGATACATATTAGCTACTCGGTTTGATTTTCTGCTTAATTACCTGTTCTATTATCAGCTAAGGCCTTAGAGCCTGTCACAAATACATATTCTTCCATAGAAAGTAGATCACGTTTAGTACTGCTGCCAATCTTTGGTGgtggaaaccttttttttttttttttttaatatcattgGGGTAATGTACAGACCTCATAGCCACTTTGGGAAATGCATACCGTATGTTCATTATGTTACAATGTAGATATCTATTTTTTATGAAgtgctttttttcaacttcacaAAATATACGCATCAAGCTCTATCAATGTTTTTTGAAGTTGACTGTAGCCTATTATACATGGTTcttagtttgtttgctttttatgctaatttaaataaaataacgtTTTACTTATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161526 lncRNA upstream 170222 33597873 ~ 33598657 (+) True G119922
TU161502 lncRNA upstream 206808 33538172 ~ 33562071 (+) True G119901
TU161485 lncRNA upstream 253456 33514011 ~ 33515423 (+) False pkn2a
TU161341 lncRNA upstream 478299 33290330 ~ 33290580 (+) True G119767
TU161328 lncRNA upstream 499677 33268370 ~ 33269202 (+) True G119763
TU161561 lncRNA downstream 1400 33811076 ~ 33851937 (+) True gng12a
XR_005640825.1 lncRNA downstream 51762 33861438 ~ 33866996 (+) True LOC120569016
XR_005640826.1 lncRNA downstream 57719 33867395 ~ 33870784 (+) True LOC120569017
TU161570 lncRNA downstream 58093 33867769 ~ 33868000 (+) True G119961
TU161572 lncRNA downstream 58710 33868386 ~ 33868686 (+) True G119963
XM_039815078.1 mRNA upstream 1100 33743259 ~ 33767779 (+) True scinlb
XM_039815079.1 mRNA upstream 1100 33743259 ~ 33767779 (+) False scinlb
XM_039816500.1 mRNA upstream 39239 33701632 ~ 33729640 (+) True ccdc18
XM_039816501.1 mRNA upstream 39239 33701632 ~ 33729640 (+) False ccdc18
XM_039816502.1 mRNA upstream 39239 33704675 ~ 33729640 (+) False ccdc18
XM_039815082.1 mRNA downstream 1292 33810968 ~ 33851356 (+) False gng12a
XM_039815083.1 mRNA downstream 1292 33810968 ~ 33851356 (+) False gng12a
XM_039815084.1 mRNA downstream 1570 33811246 ~ 33851356 (+) False gng12a
XM_039816183.1 mRNA downstream 119391 33929067 ~ 33938778 (+) False dmbx1a
XM_039816181.1 mRNA downstream 119391 33929067 ~ 33938778 (+) True dmbx1a
unassigned_transcript_564 other upstream 366557 33402251 ~ 33402322 (+) True trnap-ugg_4
TU161343 other upstream 461015 33304822 ~ 33307864 (+) True G119769
TU161294 other upstream 602779 33163916 ~ 33166100 (+) True LOC120568463
XR_005640727.1 other upstream 721745 32989790 ~ 33047134 (+) False tep1
TU161084 other upstream 987408 32780988 ~ 32781471 (+) True G119585
TU161565 other downstream 48866 33858542 ~ 33859847 (+) True G119957
TU161681 other downstream 145507 33955183 ~ 33957504 (+) True LOC120568585
TU161769 other downstream 354427 34164103 ~ 34165846 (+) False mrpl34
TU161873 other downstream 507472 34317148 ~ 34317766 (+) True G120200
TU161901 other downstream 591125 34400801 ~ 34404001 (+) False rps28

Expression Profile