RNA id: XM_039815099.1


Basic Information

Item Value
RNA id XM_039815099.1
length 8165
RNA type mRNA
GC content 0.56
exon number 40
gene id LOC120567967
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 26604861 ~ 26652958 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCAGCCCGGAAGATCTCCGACTGCACGAAGCAACGACACCGAGAGCGCGTGTTTGCCTCTCGAGCTGTCGGTTAAGGCTCTGAAATGAATGAAGACTCCATTGTTCAGGCGCAGACACCGGGGAAAGATTCAGAAGACTGTACTGTGACGCTTGTTACTGCTCTGTGTCCGTATCCGGATTATTACCGATCCACGGGCATTAACCTGGCTGCGCGCGGTGCGGCTCGTGTGTTCGTGACAGCCGATTGATGGTGCAGAGGCTCGTGCGGTGCTGTTGGGAAATGCGAAACAGCGGTTTGGTGACAGCGCAAGGACGATTTCAAGATAAATACTGCATCTCATTGATGACACATTCACATGACTTCGCTGTGCGTCTGTGGGAGTGTGCGCCATATCCCCGATGCACCTGCGCCTCCGGCAAATGAATGGTGATCCTGGGCTGATGGATATTTTTTAATGAGTCACTATATATCTGTTAACCTAGATTTTTACCTCATAGATTTCAGTCCTGCCAAGAACCTCAACCATTCTCTACAAGCATATTGCTTCTCCTTGTCTACCTCATTTCATCTATGTTTAAGCCTTTGAATTTGATGCCATTGCAATGACTGATGTCATGAGCAGCTTTACATTAtctcagattaaaaaaaaaggcttttattGTGCTCTCAAAGCTTGTGTTTACTCTGATACAGCTTGAAACATTATGCTCTTGGGTGTTCACATGGGATCAAATTCATCATAAGGATTCAGGTGTCCGCATGTCAGAGTAAATAAGGATAATTATAAACCTGTGGAATGCTTGATCTCAAGATGAAGGAGACGTGTCGCATCTGTGGACGGGAGCTCTGCGGTAACCAGCGGCGATGGATCTTCCACCCCACCCCCAAGCTCAACCTGCAGGTGCTGTTGTCTCATGCTCTAGGTCGAGAGCTGACCCGGGATGGCAGAGGAGAGTTCGCCTGCTCCAAGTGCACCTTCATGCTGGACCGCATGTACCGCTTCGACACAGTGATCGCCCGAGTGGAGGCCCTTTCCATCGAGAGGTTGCAGCGGCTCCTGCAGGAGAAACACCGGCTGAGGCAGTGCATCGGTGGGCTCTACCGTAAAACTAACTCAGAAGAGGGTGCTGTAACATTACCTGGGGGTGATGAAGGACCAGGAGATGGGATGGTGGACATTTCAGGTCTCACTCATGCAAAGTACTGTGCCCTGCTCCAGGATGATCTGGTCTACTCTTTGTATGAGTCCTGGGCCGACGACGGCCTGGACTGTCAACACCACCACCAACCTCAGTGTCCTGCTGGTCCAGGGTCAGAGGTTACAGTGGCAGGCTCGCATCGTTGTGTTCCCAGCACTCCCAGGAGGTGTCGGGGATGTTCCTACTGGCGGGTGGCGGACTCTGACTACGAAGCTGTCTGTAAGGTGCCCAGGAAGCTGGCAAGGAGCATTTCCTGTGGGCCGTCATCCAGATATTCAGCCAGTGTTATTGGAGGGAGTGTGACTGGAGGAGTGGGAGGTGGTGGAGAAGGACTACGAGAAAGAAAAAATGTGGAGGATTCAGAAGAACCCCCCTCCTCTTTAACTCTGGTCCCTGGTTCTCAGGACCCCTCGAGGACATCAGACAGTGATCGCACCCTGGCTGGACGCGCCAGCTCCAGCCCCTCTATAGCATCCTTAGAGACGACTGAGGAATATGTTCAGCCTGGAGCCATAACAGATGGGCCGCTGAGCTCCCCCAGGGAAATAGTAGATGACCGGATATCTGACTCCCTCTCTGAGGAGCACATGGGAGCCCCACATGGCCAAGCCTCACCTGGACCCAGCCTCTCTCTGGCCCTTTGTTTGCTGCAGAGCTATGCTGTCTACCGGCCCGTCATGAGCTCTAAGGGGAGCAAGCTGCCTGTGCTGCTCCGACGGAACACCAGTAATGGAGGTTCAAAGCTGGGCTTCCCTGATTCTGTTCTGGGAATGTCTTATGGAACTCcagagggagaaggagacaACCACATGCCAACACCTGAGCTGGATCCCCCTCTGATGAGGCTTGGTGATCAGGATCTGAACCTGGCTTACATGGAAGATTTGCTGGAAGATTTGTACAAAGAGTATCCTCCCCCACGTCCTCATCAGAGCCTCGTTGAGGAGCAGCAGAGTCAACTGAACCAGTATGAGTGTGCAGCCGGCCAGTGTGTCAGCGAGCTTCAGAAGGCCCAGCTACAGGTCCAATCCCTGCAGGCCAAGATCCACGAGAGTGAGGCCAAAAATATGAAGCTGCAGGAGAAGCTGAATGAGATGGAGTGTGAGCTGCGTTCAATCCGCCAGGCTGCTCAGAGTCAAGAAAGAACCATTCAGGATCTCACAGAGACCATCAGCACCAAAGACAACGAGGCCCAGGAGCTGTACCAGCTGATGGAAGAGCAGAACGCCACGCTGTGTAAGCTGAGAGAAATGGTCCACCGCAACCAGCTTGCTCAATGCAAGGCTCCAGAGGGGGTCAGCGAGTCCTTGACACTCGCCCAGCTGCAGGGCGAGCTGGTTGGGGTGCAGAGCTCCTTGTTCTCCCTTGGTCTGGAGCTGGAGGCCAGCCAGAGGAGTCTGAGACAGAGCCAGAGGCAGGGAGATGACCTGTCGAGGTTCAAGGAAAGACTCAGCGCTGATTTACAGGAGGTGCAGCAGCACAGGGAGGTCACTGAAAAGCACAAccagGACCTGCGCTGTGCCCTTCAGAAAACTCGCTCGGAGCTTCAGGCCAAAGAAGCCGCTCTGAAGGAGGCcgaggcagagagacacactgTGGTGCAGGAATCAGACAGGAGCATCGCACAGCTCCAGTGCTCTCTGCAGGACAAGGAACAACAGTTACAGGAGTACTCAGAGATGTTGGAGTCAGGAAGCTCCAAACCAAGAGATGCCCTGCTGGAGAAACTACGAGAGCGTATTAAAGATAGAGACAGAGCTCTGGAGCACTCCATCGATGACAAATTCCGCTGTGTGGAGGAGCGCGAGGGCCAGGTGAGGAGGCTGCAGCTGGCCCTTAGGGAGAAGGAGCGAGACCTGGAGAGACTGCGCTGCATCCTGTCCAACAACGAGGAGACCATCACGAGTCTGGACGCCTTGGTGCGTGGCAAAGAGCTGGAGCTAGAGCAGGCGGCAGAGGCCTACAGGAACCTCCAGTGGCTGAAGCAGCAGagtgaggagaaggagagaaacacCCTGAGAGAAAAAGACACCATCATCAGCCAGCTACAGGCCGCTCTGCAGACACACAGCCAGGAggcacaggatCTGACCGCTGCCCTGGTTGCCAGAGTTCAGGCTGGTCCCACTGAGGTTGTAGAGGAGTTGAAGGCTCGGCTGGCACTGAAAGAAAAGCTCTTCCAGGAACTGCTGTCGGACCGCAGCCGCCAGTCCAATGAACACCAAGCACAGGTCCAGAACATGCTGAACACTCTCAGCTCCAAAGACCAGTATCTGCAGGACTACTCGTACAGGCTCTCCCTTGTGATTAGTGAGCGGACTGTCCAGCTGCAGGAGTTACGCAGACAGCTGTCATCGAGAGAGCGAGAGCTGTGCGAGCTGAGACAgggcaaggagagagagatgggaggaGAGACGGAACATCTGCGGAGTCTGCTCAAAGAGAAAGAAGCCTTTATCAAGGAGCTGATGCAGGGCCAGGAGGAGGCAATGCAGCCATCCACTAAAGAGAGTGAGGCAGAGATGGAGGCTCTCCAGGTGGAGTTGAAGCTGGTACtgaagaaggagagggaggCTCAGAAGGAGCTCTCTGCTCTGCGTTTATCTTTGGCTCACCAGCAGGACACTAGGGACAGCACTGATCATCAATGTGTGCTAGAGCAGCTTGTGTCCGAGTACAACAAGCTGAATGATGCCCTGAGGGCAGAGAAGAGATTATACCAAAATCTCACGCACATTCACACCAACAGTGACAGTTCTGAGAAGATCCAGGTCCTCCACACCGAGCTAGATTCGATTCAGGCACTCCGCAGACAGCTGGAGGAGGTCCTGGCCAGGACCCGTAACATGGCCCTGGTGCTGGAACGGCCAGCTAAAAGGCAGCCTGACTTTGGAGAGCTCagcacagaggaggaggaggaggaggagggagacgaTGAAGATGGCAGCAGTGACGAGTTCACGGACAGCATAGAGGAGGATGATGATAAAGTGACGGCCAGAAGTTTGGCCTCCATTCAGGTTTGTGAAACTGAGGTTGTGACTAGAGCGCTGGTGTCACAGAGAGCTGATGTAAAGCAGCTTGAGGAAGCGAAGAAGATACTTGAAGGCCAGCTTGAAGAAATAAGATCACAACTGGAGAGGGATGGATACACCTCCGTGGCTCAGCTGAGGAGTGCACTGCAGGGGCTGCAGCAGGAGAACCAGGCTCTGAAAGAAAGCCGAGGACGAGCAGAAGTGGTTGGACCGAGGACAAACCCAGGGAGGAATCGCAGGAGTCTGAATCAGGACGAGGAAGAACAGGAGGAGGGTATTGAGaaagaagatgaagaggaggaaatgTCTCCAGTGCCGGTGGGGAAGCCAGGTCATCCGTGTGTTAGTCTGAGTGACGGGCGAGGGAAGAGGCACTGCAAGAGGCCACGCTGTCTGACGCCCCGTCATCTCACACACCAGCCTGACACGGAGGTGGAGCCTGCTGGTGACAGCAGTGAGGTGGGAGCGCTCTGGCAGGATATAGGGGAGGGTCTCCGTGAGCGGGCGGCCCGCCTGAGCTCCAGTCTGGCTCTGAGCCATCAGGAGAACAGAGAGCTGCAGGAAAGGCTGATGGTGTCTGAGGCCACGGTCCACGCTCAGGCTGAACAACTGAAGGACTACAGAGATCTGCTCACGGAGACATCGGTCCAGCAGGCCAGTAAGCAGGTGCAGGTGGATCTCCAGGATCTGGGTTATGAGACTTGTGGTCGCAGTGAGAACGAAGCTGAGAGAGAAGACGCCAGCAGCCCAGAGTTTGACGACCTGGAGATGTGCACGTCACTGTCCCACCAACAGGACTACGAGGGTGCGGGCGGTAGCTGGTACGCTGGCAGCAGTAACACAGGCGCTTATGAAATGGGGGATGAGTcagcctctctccagcatctgGTCCAGGATCTCCGCTCACAGCTGAGCCGCTGCCACAAGGTGATCCGTGGGCTGCAGCTGCGTGTCCGCTCCCTGTCTACCACCAGCGACTACGCCTCCAGCCTGGAGCGAACCCCACGCAAGGTAAACTGGGCCTTTGAGACATCACCAGCCCCCAGTGGTGTGGAAGAGGATGAAGGCTGGATGTCTGACACCCAAGGGATTCGCTCAGGGCCTAAGCCCAGCAGGGAACTGCAAGAACTGATGACACGAGTTGCATCACTTGAGGCTCAGCTGAAGAGCTCCAGACTGGAGGGCAAAGGCCAAGAAGAGGAGGTGAAATGTGCCACCTGGCCCGGGAAGTACAACTCTTTGATCCAGGCACAAGCTCGTGAGCTGTCCCACCTGAGGCAGAGGATGAGAGAGGGGCAAGGAGTCTGTCAAATCCTCACCCAGCACCTGGGTGATACCACCAAGGCCTTCGAGGAGCTGCTGCGGGCCAATGATATTGATTACTACATGGGTCAGAGCTTTAGAGAGCAGTTGGCACAGAACTCTGCCCTGGCACAAAGAGTGGTCACCAAGATCAGTGGACGCGAACGTGCAGAGAGCCATGATGACAAGACCAGCCATGAGTTGCTTGCCCTGCGGCTGAGTAAGGAGCTTCAGCAGAAAGATAAAATCATCGAGTCACTCCACACCAAGCTGCAGCAGCGTCCGGAGACCCCGTCCAGCTGCCACGCTCTGTCTGAGACCACCGACCAATCAGACAGAACGTCCCTGGTGTCCGATGAGTACAGAACCAATGAAGACTTGGATCTGTGCTCCGATTTAGACGCCAGAGAATATCAGGAGGAGCACCGGCTGCGCCAACCAGGACACGGATCCGAACAAGACGTCCGTCCATCTATCCCTCCTCCTCATGGCTTCCTCAAGAcctccagcagctgtcccaacatGCTTTGCTCAGCCCCTGTGGGTTTGACCAGTCAGTCCTACAGAGCCATTTTCAGTGAGCCTGTCTCCTACTCCCTCTCTGTCCCCCCTGGCCCTGACGTCTGGGGTAGAGAAGTCACTTCTGACCCCCGGCCCAGGGCCCTGTCTGTGATCGCTGTTCGCCCAGAGCTGGACACGCTGCACAAACAGATGAATGCGCAGAACAGGGGCTTTGCAGTTCCCCATGACAAGGCTCTGTTCCCTCTCTCGCCGGGTGCCCACAACCAGCACGACCTCTCCAGCTACAGCCAGCTATCCCATCATGCCTTTCAACAGTATCAGCTGGGTGGCATTCCCGAAGGCCACTCGCTGAAGTCTGACTCAGGTCTAGTGACGGGAGGGACTTTGTGGGACATGGAGAACATGGCTCAGCAGGTTGGAGGCTACTCTGGACCATCGGGACTCCAGCAAGGAAGCAGCCATGCAGGGGTAAATTTGATAGAGGAGCACCTGCGGGAGGTGAGGTGTCTCCGTCAGCGTCTGGAGGAGTCCATTAGGACCAATGAGAGGCTCCGACAGCAGCTGGAAGAGAGACTGGCCTTGACTGGCCGTGATGGAGgGGCACCAACAAACATCTACATTCAGGGTCTGGACACAGTCACTCAACTGTCCAATGAGATCAGAGTTCTGAAGGAAGAGAACATGGGTCTACAGTCACGCCTGCAGGCCAGTACAGACACATGTGAGGAGGTGGTGCAGTTGCGGGAGACGGTGTTTACAGCACGTGCCCGCCTGAAACAAGCAGAGCTGGAGGCAGAGCAGTGGAAAGAGGAGCTAAGACGACTTCAGGCTCACAGCCAGGAGCAGGGACAGCAGATACACATATTAAGGCAGGAACGGCAGGCCAGTCAGCAGAAAACCAacagGCTCCAGCATGAGGTGTctctcctgcagcagcagctgtgtgaGAGCAGAGAGCTCATCCACTCCCTGCAGAGTGAACTACAAGTGTACGATCGAGTGTGTTCCAGCACAAAGGCCAACAAAGGCTACCTGTGTGAGCTCCCAGGTCTGCCGGTGGAGCTGGGGGAGCTGCTCGGGGAGGTGAGGAGTCTGCGAGCCCAGCTGCAAAACAGCGTCCAGGAGAACAGTGCTCTCAAACAGCTGGAGCTCCACAAGCAGCTGGAGCAGAAGCTGGGTGTGGGCTCTCCTCGGACCCCCTCCCTCTCCGCCCTCACTGCCAGCCCTCAGAGAGAGAACTTCTACAGGCGACAGCTGCTGCacgCAGACCCTCTTGACCCTCACTCTGAGCTGGAGGGGGAGGCCCCAGACGGATCGTTTGCGAACCGTAACGGCCGCCACGCCATCGGTCACGTGGATGACTTCAGCGCTCTTCAGCAGCAAGTCCTAGAGGGACGGAGCCTCGTCCAGCGCATGGAGACAACCCTGCAGGCCTGTCTCGGCCCACCGCTGCTGGAGAGCAACCAGCAGCACAGCAGTGAGCTGGTCTTGGACTATGGATgtgtaaaaagtctgctgtccAACACCAAGACTCTGAGGCAGATCCTGGAAGAGGCGATGTCTCTCCTGAAGATGTTCTGGAGAGCAGCTCTGCCCAGCACTGATCCCTCCATCCAGAACCTTAAGAAGgagcaGTGTATGCAGGAGGAGATCTTGTCTCTGAAACTGCGTATATCAGAGCAGGAAGAGGTTCTTAAAGGGACGATTCAGAGACTGAGGAGCACCAGCCGCACCAAGGAGAACATGGAGCACTTCATAGTCAACCAGTtgtcaAGGACTCGTGATGTGCTTAAGAAAGCCAGGACAAATTTAGAGaagaaCGAGCTGAGACTTTCCTCTCTaagctcctcctcttcctctccttacGCTGCTGAGGACCCAGGAGGTGCTGCCAGAGAGCGGCCTGCTGATCGCGGTTTCCTGAAGGCCGGCGGTGGCTCCGgggctgcagccaatcagcgtcCAGCAGCGAGGAAGCGCAGCAGCCAATGCCTGCTTTAAACTTTTAAAGAACCAGCCTCAACGCTACCACCTCTGACCTCTAACCTCTATGCTGAAACAGCCAAGACCCCTCCCCCGCCCCCaccacccaccccccaccccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159275 lncRNA downstream 3476 26532167 ~ 26601385 (-) True G118165
TU159153 lncRNA downstream 125183 26477463 ~ 26479678 (-) True G118076
TU159151 lncRNA downstream 129905 26473887 ~ 26474956 (-) True G118075
XR_005640834.1 lncRNA downstream 178063 26421455 ~ 26426798 (-) False LOC120569074
TU159132 lncRNA downstream 179934 26421450 ~ 26424927 (-) True LOC120569074
TU159297 lncRNA upstream 31512 26661621 ~ 26665181 (-) False G118175
TU159313 lncRNA upstream 101768 26731877 ~ 26732084 (-) True G118186
TU159466 lncRNA upstream 330291 26960400 ~ 26963105 (-) False G118308
TU159467 lncRNA upstream 330291 26960400 ~ 26963752 (-) True G118308
TU159486 lncRNA upstream 449898 27080007 ~ 27142908 (-) True G118321
XM_039816373.1 mRNA downstream 23642 26572397 ~ 26581219 (-) False LOC120568700
XM_039816372.1 mRNA downstream 23644 26572397 ~ 26581217 (-) True LOC120568700
XM_039816393.1 mRNA downstream 33057 26565990 ~ 26571804 (-) True prpf38b
XM_039816853.1 mRNA downstream 96061 26497503 ~ 26508800 (-) False gpsm2
XM_039816854.1 mRNA downstream 98736 26497503 ~ 26506125 (-) False gpsm2
XM_039816685.1 mRNA upstream 43924 26674033 ~ 26715435 (-) True LOC120568933
XM_039816684.1 mRNA upstream 43924 26674033 ~ 26707635 (-) False LOC120568933
XM_039816806.1 mRNA upstream 135372 26765481 ~ 26772945 (-) False LOC120569007
XM_039816805.1 mRNA upstream 135372 26765481 ~ 26772945 (-) True LOC120569007
XM_039816804.1 mRNA upstream 146928 26777037 ~ 26781098 (-) True armc6
TU158687 other downstream 1681543 24922203 ~ 24923318 (-) True G117732
TU158445 other downstream 2068365 24499380 ~ 24536496 (-) True G117560
XR_005640841.1 other downstream 2583360 24021439 ~ 24021501 (-) True LOC120569138
XR_005640840.1 other downstream 2584423 24020362 ~ 24020438 (-) True LOC120569137
unassigned_transcript_562 other downstream 2735635 23869155 ~ 23869226 (-) True trnap-agg_8
TU159298 other upstream 31512 26661621 ~ 26665952 (-) True G118175
XR_005640672.1 other upstream 189729 26819838 ~ 26824570 (-) False cirbpa
TU159721 other upstream 1040867 27670976 ~ 27675360 (-) False LOC120568986
TU159739 other upstream 1083358 27713467 ~ 27714390 (-) False G118524
TU159738 other upstream 1087442 27717551 ~ 27718759 (-) True G118524

Expression Profile