RNA id: XM_039815109.1


Basic Information

Item Value
RNA id XM_039815109.1
length 4046
RNA type mRNA
GC content 0.45
exon number 12
gene id LOC120567969
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 22576333 ~ 22622878 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCTACCTCGGTGTGAGTGGCCGTGGTTCTTCGTCTGCCCAAGTCGGCCGGCAGTCATCCCTGGACACTGGTTCAAATTGATGGCGACCACTCCAGACAGCAGCACAGACCGCAGACCGATCAGGAGACTCCGCTCCAAGAGCGATATCCCGTATCTGGTTGAAGCCAGACTCTCCTTCAACCTGCGGACAGctgaggaaggagagaggctGGCCGCCATGCGTTCTGAGTCCTTGCTCTCCGGCACTCACACTCCACCCATCCGTCATCGGAGCAAGTTTGCCACTCTGGGACGCCTCCTCAAGCCATGGaaatggaggaagaagaagagtgaGAAGTTCAAGCAGACCTCAGCTGCTTTGGAAAGGAAGATGTCGATGCGACAGAGCAGAGATGAGCTGATCAAGAGAGGAGTGCTTAAAGAGATCTTTGAAAAAGCAACCTTTGAGTTCCGATCCTCGATGGACGGCGGAGTCTGCACTCAGGAGCCCTCTATTAAGTCATCTATGGTCCTGCCCGTCAAGAAATCTGTCACCTACTCAGGGGACCTTCAGGATATCCCCGCCAAGCCGCCGCATTACCACAAACAgcctcctgctctccctccaaAACCTTTCTCTAGGATCCCGAACCATAGCACAGaTTCTTGCCAGCCGATGAAGTTGCCCTGTATGCCCGGGGGAAAGCACTCTCCACCTCTGCCTCCCAAGAAAGTGATGATTTGTGTGCCTCCAGGGGGGCTGGACTCCCCTTCTCCGCCCCCAAATTCCCTCTGCGGCCTCTCCCAAAAGTGCGGGCCCCCCCAGGGCATGCCCCCATATCACGGCACCTTGCTGCCCTCTCAGCTCGCCGCTCTATCCAGTCTTCACCAGAGCCACGGTCACCCGTTTCAGCTTCAGTACGGCAGCTTGCATGCGCCCAGCCGCATCATCGAGGAGCTCAACAAAACCCTGGCGCTCTCCATGCAGAGGTTTGAAAGCTCTGCATTGCACGGCGTCGGTCAGTGTGTCCCCCTGGACAGGAGAGAAGTGCCATCTGTGATCATCGACTACGAGGATGACAAGGAGAACATGCCCAACGAGTCCGACTACGAAGATCTGCCCAGCATGTATAAGGACGAGGACGACGATGTGGATGATGACGAGGACGATGATGAAGATGACATATTAACAAGTTCTCTGGCTCAGAAGGTGCTGAGGAAAGACTCTCTGGCCATCAAGCTGAGTAACCGTCCATCCAAAAGAGAGCTGGAGGAGAAAAACATCCTGCCCATGCAGACAGACGAGGAGAGACTGGAGTCTAGGCAGCAGATCGGCACCAAACTCACAAGGCGCTTGAGTCAGAGACCCACAGCGGAGGAGctggaacagaggaacatcCTCAAACCTCGCAATGAGCAAGAGGAGATtgaggagaagagggagataaAACGAAGGCTATCACGAAAGCTGAGCCAGAGACCCACTGTAGAGGAGCTGAGACAGGCCAAAATTCTCATCCAATTCAGTGACTACGTGGAGGTGTCCGATGCCCAGGACTACGACAGGCGGGCAGATAAGCCCTGGACCCGACTCACAGCAGCTGACAAGGCAGCTATACGGAAGGAACTCAACGATTTCAAGAGCAATGAGATGGAAGTGCACGAGTCAAGTCGCCATTTAACCAGGTTTCACAGACCATAGTAGACCACCACTGTCTTGAGCAGTGCCGGACCGGCGCTCTCCTCCACTGAGAACCTTAAGTGCTGGACAGTAAAATGGTGCCAGTTTATACAATAAGGCCATGTCTTCTGAAATGCCTTTTCAAGACCCACACAACTGAGTTGGTACTACGCTCCAAGATGCAGACACCCACTACTCCATCCACTGTAGTAGCACATAAGGACTCCAGTTGATTCACATCGCCCCTCTATGgaatttgcttttgttttgttgcaatTGATTGACGCTTTCAACATCTACTGAGGGCAACCGTACCTTGGTTCCTCAATAACACCAGTGGACTTGTCTCAGTGGACGTGTTTTTATCCCTCTTCGTTATCATGGTGTCACTCCGGACTCCTCGAGCCCTTATGGACAACTCTGTGTTGAAGATGCAGTGTTGCTTGTTCTGAGCTCACTACATCAGGAGGAGATCAATCTTTActccacctgctgggactttgGAAACGGCTTAGAAAGACACACAGGGGGGAGGGAAGGGTGCAACGTTAGAATCATGTGCAATATTCTTTTTCTTCTGCTTCTCCTAGGCTATAGCACCCCCTAGAGTCTCTTCTGTGTCATTACTATGTAGTCCTGACTTTTGTTCTTCCCTCTTATGTGCAATTCTTACTGTACCGGCCATGTTGACATCTAATTGCTAACTGTGAATTTGAGAGTTTGGGCATTGCCCACACTCTCTccaaatgtacattttgttcATACTGAAAAAAAGCAAAGTTACATTTAAAGAAGAACCATGCTTGACCAAGTTTCATTCATGTCACAATCTTAAAAACGTAATGTAAAAAATGCAGCTGGCAGATGTATTCTGATTCCAGTGTGTGCAACAATTATCTGTTTTATAatgttttgtcagtttttacttgtttttgatAGAGGCACTTAGATCATAAATGATTAATTTACATGTTTTTACATGTCCCAGCTCTGAAACGGAATACCAAGAGCTGCCTCACCACGtcattgttttctgtttgcAGCAGTGTGTTTAATGATCTTTGCTCATAATGTGTGCATTGTATTATACACTTTTAATTTTCTACTTATGTCATTATAAGGTTTTGGCTAAGCAATATCTGTTGTTTTGTAGAGAAAAGTTAAACTACAGGTGTAACCcccacttttttcttcttttttttactgtgctTACACATTACGCCTCACTTCAGGGTTTTCATTTTActtttctactttactttaggAAGGCTTTATTCAGGAGgactttttttctgcatttatcttGACTGAGCCACCAAAAACATCTGCCTCTTTAACAGCTTACCAACACAGTCTCAGATCTACAATTGAACACAATGATGCACTCTCGATTTTGAAACACGAGTACAGGTATAAGTGAATTCATTGAGTCaggaatttaaaatgtttattgcTAAAATTCTTTGCACTGTTAAGAGTTTGGCTTTAAAATGGTCACTGTTTTAAGGTCAGGGCCCAAGTGTGTAAACATTTGTTCGATATCAGATCGGTGACGATTTTGTCTTTTCACTTTAACGGTCTTGTTACCTGATCACTGATCCTACACCAGTATTCCAATGTTCATAAGCTTTATgtacacaaatatttttttttttaaatatttttactgTATTACTTTTAAAGTTGCAATATGAAATTCTTGTTTGTCAGATGAAGAAAAGTAGTAGCGGTAACTGGATGTTGGCCGCCTACTAGAATGCATCTGTCTGCAAAGGAAAATGTGTTCTCCCTTATTTTCAAGGTCTCGATCAGTGATGGATAGATGACCCAATAAAACCTAGGAACATAGAAAATTTGTTTTGCACTTTATGGATTTTATGTGAAATAATAGGGATCTTGGTTGATTTTTGGGGAGTTTGGAGCGGTTTATCCTTAGAATCTGTACACAGGTCATTCTCGTATCAcaatgctccttttttttttttttttataaaaatttcATTGGGTCATCTAATCTCAGAGACTTTGAAATATGAGGTATTTCTTGTGTTAGAAGAAGCTTCTATAGGATTCCAGCATCATGCCATTATTTGAAAATGTCCATCCATAGGTTCAGTACAATAGAGCATAATTAGGAATGAATTTACACAAACAGTTCTCCAGTTCTCATTTCAGCTCTAAGAAACGAACCTGAGCCACTGGGCTGAGCATGAGGTTTTCCATTTAAGCTGGAATCGAGGAACATGAATTCAGCAATAATCTGTTTCCTTTAACATGTTGGTAGAGCATCTGAACGAATTTGAAAGTgttccttttttcattttttaaatacagaataCCATGTAAAGGATACGTCATGCCAATTAAATTCCATTTCTGAATGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640797.1 lncRNA downstream 370342 22181964 ~ 22205991 (-) True LOC120568857
TU157630 lncRNA downstream 375353 22195324 ~ 22200980 (-) True G116954
TU157587 lncRNA downstream 397799 22178293 ~ 22178534 (-) True G116922
TU157550 lncRNA downstream 573475 21997794 ~ 22002858 (-) True G116893
TU157461 lncRNA downstream 765187 21810862 ~ 21811146 (-) True G116832
TU157760 lncRNA upstream 7018 22629896 ~ 22632268 (-) True G117052
TU157764 lncRNA upstream 47855 22670733 ~ 22674450 (-) True G117055
TU157840 lncRNA upstream 184194 22807072 ~ 22809753 (-) True G117112
TU157848 lncRNA upstream 202495 22825373 ~ 22825583 (-) True G117117
TU157843 lncRNA upstream 210188 22833066 ~ 22834881 (-) True G117114
XM_039814976.1 mRNA downstream 2526 22525261 ~ 22573807 (-) True phlpp1
XM_039814974.1 mRNA downstream 72754 22496072 ~ 22503579 (-) True opn7a
XM_039816280.1 mRNA downstream 91362 22480588 ~ 22484971 (-) True dusp22b
XM_039816279.1 mRNA downstream 96369 22466809 ~ 22479964 (-) True irf4a
XM_039814728.1 mRNA downstream 138599 22436460 ~ 22437734 (-) True foxq1a
XM_039816920.1 mRNA upstream 66196 22689074 ~ 22694675 (-) False LOC120569075
XM_039816919.1 mRNA upstream 66196 22689074 ~ 22694674 (-) True LOC120569075
XM_039816311.1 mRNA upstream 80586 22703464 ~ 22738248 (-) True LOC120568657
XM_039815352.1 mRNA upstream 116756 22739634 ~ 22757614 (-) True LOC120568106
XM_039815353.1 mRNA upstream 116756 22739634 ~ 22757612 (-) False LOC120568106
TU157659 other downstream 307774 22263123 ~ 22268559 (-) True G116969
TU157655 other downstream 312835 22261998 ~ 22263498 (-) False G116969
TU157096 other downstream 1565764 21008049 ~ 21010569 (-) False higd1a
TU156767 other downstream 2780624 19793834 ~ 19795709 (-) False xcr1b.1
TU156578 other downstream 3110953 19464700 ~ 19465380 (-) True G116138
TU158039 other upstream 807488 23430366 ~ 23430992 (-) True G117259
XR_005640657.1 other upstream 845742 23468620 ~ 23491612 (-) False LOC120568062
unassigned_transcript_560 other upstream 1245074 23867952 ~ 23868025 (-) True trnai-aau_23
unassigned_transcript_562 other upstream 1246277 23869155 ~ 23869226 (-) True trnap-agg_8
XR_005640840.1 other upstream 1397484 24020362 ~ 24020438 (-) True LOC120569137

Expression Profile