RNA id: XM_039815127.1


Basic Information

Item Value
RNA id XM_039815127.1
length 1857
RNA type mRNA
GC content 0.51
exon number 11
gene id stk25b
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 33356507 ~ 33365322 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AATGCGCATGCGTCCCGCGGCTGGGCCATTATTTTGTCCTCCTCAAGCTTCAAATGAACAACAGGCTAAGCGTTCCTTGAAATGAATTAAATATTAATAGGCGGAAGGAGCATTTTATGTTCTTGTTCATTACTGCCGATATAAATGAAGTCTCTCGGTCAATAGCTTGTTGGCTCGCCGGGCTCTTCAGTCCTCCGTTGGACTTGGAGGCCGAAAACAGAGCGCGGAGTGACAGCCCCGTTAAAGCCAGCAGATTGGGTGTTTATCTAGCTGGCTAGCCACCTAGCTAGCTTCCTAGACAGCTAAGAGGGGAGGAAAAACCCGAAAGGATCTTTTCGATAAGCTCGGAAAGAGAGAGCTGTGGCTGTCCCTGTCCCGTCCGACCTGCAGAGGGGATGGCACACCTTCGAGACATGCAAAACCAGAATACCCGGCTGGACCCCGAGGAGTACTTCACCAAGCAGGAGCGGATTGGGAAGGGTTCCTTCGGAGAGGTCTACAAAGGCATCAACAACCGCACAAAGGAGGTGGTGGCGATAAAGATCATAGATCTGGAGGAGGCCGAGGACGAGATCGAAGACATTCAACAGGAGATCACAGTGCTGAGCCAGTGTGACAGCCCTTTTGTTACCAAGTATTATGGGTCGTACTTGAAGGGGACCAAGCTGTGGATTATCATGGAGTATTTAGGTGGAGGATCTGCTCTGGATCTGCTCCGTCCAGGGCCTCTTGAGGAGACTTACATTGCTACTATACTGAGGGAAATACTGAAGGGGCTGGAGTATCTGCACTCCGAAAGGAAGATCCACAGAGATATCAAAGCTGCCAATGTGCTCTTGTCGGAGCAGGGCGATGTGAAGCTGGCAGATTTCGGGGTGGCTGGACAGCTGACAGATACCCAGATTAAGAGGAACACGTTCGTCGGTACCCCTTTTTGGATGGCTCCAGAGGTTATAAAGCAGTCCGCCTACGACTTCAAGGCTGATATTTGGTCCCTGGGAATCACTGCCATTGAGTTGGCTAAAGGGGAACCTCCCAACTCCGACCTACACCCCATGAGGGTCCTTTTCCTCATCCCGAAAAACACTCCACCCACACTTGAGGGACCTTACAGCAAGCCCTTCAAAGAGTTTGTGGAGGCTTGTCTGAATAAAGACCCTCGTTTTAGGCCAACAGCCAAAGAGCTCCTAAAGCACAAGTTCATCACGCGCTACACCAAGAAGACAGCCTATCTGACGGAGCTGATCGACCGCTACCGCCGCTGGAAGTCCGAGGGCCACGGGGAGGAATCCAGCTCTGACGACTCCGATATGGATGCTGATGGTGATGTGGATACGTGTCCCATGTGGACCTTCCCCACAGTCAGACCCAACTCTATGAACAAGTTACAGaagggctacacacacacagattcagaGTCAGGAGATTTGGTGAAAAGGCAACCCAAGTCACAATGCTTGTCTGCTTTGGTAACACCCATCTTCAGAGAGTTGAAGGAGAAGCGGCGGGCGAGCGGCGGGGGCGTCGGAGCCATCGAGGAGCTGGAAAACGCCTTCAACCTGGCCGAGGAGTCCTGTCCGGGCATCTCCGACCGCCTCGTCACACACATGATGGAGAGAGTGTGCAGACCCACCCGACGCTTCAGATAAGGACCACAGAagaccccaccccccctccttcCACTACCACTCCTCGTATCTTTGCACCCTTCTCAGTCttgtccctcccccccccccaagagaTCTTTTAATTAgttataattaaatatttttacagtttttctttaagaGCGGAgagtatttaaaacaaaaaaagccatGACATTTAGAGCGTTGTGTATACCTGTTAgattgagaa

Function

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0048514 blood vessel morphogenesis biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161341 lncRNA upstream 65927 33290330 ~ 33290580 (+) True G119767
TU161328 lncRNA upstream 87305 33268370 ~ 33269202 (+) True G119763
TU161305 lncRNA upstream 163308 33192587 ~ 33193199 (+) True G119744
TU161290 lncRNA upstream 170615 33181456 ~ 33185892 (+) True G119733
XR_005640730.1 lncRNA upstream 190409 33163933 ~ 33166098 (+) False LOC120568463
TU161485 lncRNA downstream 148689 33514011 ~ 33515423 (+) False pkn2a
TU161502 lncRNA downstream 172850 33538172 ~ 33562071 (+) True G119901
TU161526 lncRNA downstream 232551 33597873 ~ 33598657 (+) True G119922
TU161561 lncRNA downstream 445754 33811076 ~ 33851937 (+) True gng12a
XR_005640825.1 lncRNA downstream 496116 33861438 ~ 33866996 (+) True LOC120569016
XM_039815269.1 mRNA upstream 57721 33292188 ~ 33298786 (+) True atp1b3a
XM_039815267.1 mRNA upstream 71041 33273117 ~ 33285466 (+) True gk5
XM_039816011.1 mRNA upstream 175919 33126780 ~ 33180588 (+) True LOC120568455
XM_039816012.1 mRNA upstream 206215 33126780 ~ 33150292 (+) False LOC120568455
XM_039814666.1 mRNA upstream 229707 33075783 ~ 33126800 (+) True LOC120567698
XM_039816506.1 mRNA downstream 43366 33408688 ~ 33410016 (+) True LOC120568799
XM_039816488.1 mRNA downstream 48753 33414075 ~ 33419694 (+) True cldn18
XM_039815452.1 mRNA downstream 68880 33434202 ~ 33473617 (+) True hs2st1a
XM_039815451.1 mRNA downstream 68880 33434202 ~ 33473617 (+) False hs2st1a
XM_039814669.1 mRNA downstream 112014 33477336 ~ 33515424 (+) True pkn2a
TU161343 other upstream 48643 33304822 ~ 33307864 (+) True G119769
TU161294 other upstream 190407 33163916 ~ 33166100 (+) True LOC120568463
XR_005640727.1 other upstream 309373 32989790 ~ 33047134 (+) False tep1
TU161084 other upstream 575036 32780988 ~ 32781471 (+) True G119585
TU161083 other upstream 580825 32775074 ~ 32775682 (+) True G119584
unassigned_transcript_564 other downstream 36929 33402251 ~ 33402322 (+) True trnap-ugg_4
TU161565 other downstream 493220 33858542 ~ 33859847 (+) True G119957
TU161681 other downstream 589861 33955183 ~ 33957504 (+) True LOC120568585
TU161769 other downstream 798781 34164103 ~ 34165846 (+) False mrpl34
TU161873 other downstream 951826 34317148 ~ 34317766 (+) True G120200

Expression Profile