RNA id: XM_039815144.1


Basic Information

Item Value
RNA id XM_039815144.1
length 4094
RNA type mRNA
GC content 0.51
exon number 23
gene id clcn2a
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 23963949 ~ 24005011 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGGATCTTCCTCATTCTGCTGGGGCTGCTCATGGCTCTTGTCAGCTGGGTCATGGACTACGCCATCGCCTTCTGCCAAGAAGAAGTGGATGTATGGTGGACTGGACAGTAACATGCTTCTGCAGTACATCGCCTGGGTCACCTACCCTGTAGTGCTCATCACTTTCTCAGCAGGATTCACACAGATTCTGGCCCCTCAGGCTGTGGGTTCAGGTATTCCAGAGATGAAGACGATACTGAGGGGGGTTGTCCTGAAGGAGTACCTGACGTTTAAGACGTTTGTGGCCAAAGTCATCGGTCTGACCTGTGCTCTGGGCAGTGGGATGCCTCTGGGGAAGGAGGGACCCTTCGTTCATGTTGCCAGTCTGTGCGCCGCTCTCCTGAGCAAATTCATGGCTCCTCTTTTTGGTGGGATTTACATGGAAGAGCCCTTTGAGGGAAGCAAGAACGAGCTGAGGAATACAGAGATGCTGTCGGCTGCCTGTGCAGTGGGTGTGGGCTGCTGCTTCGCTGCCCCCATCGGAGgggtGCTGTTCAGTATTGAGGTCACTTCCACGTTTTTTGCGGTGAGGAACTACTGGAGGGGCTTCTTTGCAGCCACCTTCAGTGCCTTCATATTCAGAGTGCTGGCGGTGTGGAACCAGGAGGAAGAGACCATCACTGCTCTTTTTAAGACCCGTTTCCGTCTTGACTTTCCATTTGATCTTCAGGAGCTGCCGGCGTTCGCCATCCTCGGgaTTGCCTGTGGTTTTGGTGGTGCTCTGTTTGTCTACCTGAACCGGctgattgtagagtgcatgagGAAGCAGAAGACTATTAACAAGTTCTTGCTGAGGAATCCATCTCTTCCGGTCAGGCGTCTGGTGTATCCCGCTCTCGTCACCCTGCTGATCTCCACTCTCACGTTCCCTCCGGGCTTCGGGCAGTTCATGGCGGGACAGCTGACACAGCACGAGTCTCTGGTCGCACTGTTCGACAACCGCACGTGGTGCCGCCATGGCGTGGCGGAGGAGTTTGACTACACCAGCCACCACCACGCCTGGAAACACCCACAGGTCAACGTCTTCATCACActcatcctcttcatcatcatgAAGTTCTGGATGTCCGCCGTGGCCACCACCATGCCGGTTCCATGCGGGGCCTTCATGCCAGTTTTTCTTATCGGTGCAGGATTTGGCAGACTTGTTGGAGAGGTCATGGCAACCATGTTTCCTGATGGCATACATGCTGACGGCAGCGTGTATCCCATAGTTCCCGGCGGTTATGCTGTAGTTGGTGCTGCAGCGTTGTCTGGAGCAGTCACCCACACTGTATCCACAGCAGTCATAGTGTTTGAGCTGACTGGTCAGATCTCCCACATCCTGCCTGTGATGATCGCTGTGATCCTGGCCAACGCCGTGGCCCAGTCACTCCAACCATCACTGTACGACTCCATCATCCGCATCAAGAAACTCCCTTATCTACCTGAGCTGGGCATGGGACATCACGAGAAGTACAATATCCGAGTGGAGGACATCATGGTCAGGGATGTGCGCTACATCACTCTTATCTCTTGCTATCGAGACCTGCAGGAGATGCTGCTGACTGGTCAGCTCAAAACACTGGCCCTGGTTGAGTCCAGCGACTCGATGatcctgctgggctccatagaGCGACTGCAGCTCCAGTCGCTGCTCTCTTTCCAGCTGGGCCGCCAGCGGAGGCTGGAGTACCTCCGCCGGCTGGCCCAGGACAACGGCAACCACGATCCCCTGCCCAGCCTGAACACCGACAGCACGCCCAGCTCCCCCTGCTCCCACACCCACATCAACGCCTCGACCAACACCAACGCTCGCCAAGGGGTGCGCTTCCTGGTGAGCACCCAACAGATATCCACAGAGGAGTCTTCCTCCTTCAGCCCAGGGGTTTCCAACGTTCAACTCCCTCTAAAATCTGCCTTGAAAACTGTGTCAGCCATCAGCGACCCAGAGACGCCAAATAGTTCTCAGACCCTCTCCTGTGCTGACCAAGACAAGGACTTGCTGgagAGCCCGGCTGGGCCGGCTCCTCCTGAAAAAAGAAAGCCCAAGTCCAAACGAGTGAGGATCTCCATGGCGGAATCTACTGAAGTGGAAGATGGCATGTCCCCATCAGACATAGCAGAGTGggaggagcagcagctcgaTGAGCCGGTGGATTTCAAGAACTGCAAGATTGATCCCGCTCCCTTCCAGCTGGTGGAGCAAACATCTCTGCATAAGacCCACACTATCTTCTCTCTGCTGGGTCTGGATCACGCCTATGTTACCAGCATGGGGCGTCTGGTTGGAGTGGTCTCTCTCAAAGAGCTGCGTAAAGCCATAGAGGGCTCGGTGACAGTGACTGGAGTAAAAGTGCGCCCTCCGTTGGCCAGTTTCCGTGACTGTGGGAACAGCACAAGTGTATCAGAGGTAACGGAACTACACAAGCTTTGCATCCGCCACAGGGGGCTCTCATTGCCACGCGAACCCAAGCGTCCTGACGTGGTGGACAAGCCAGATCTCGCCTACAAAGAGATCCCCGTCAACTtctcggaccaatcaaatttgCAGTTTGAAACCAGCCCCGGTGACGTCTCAAGTCAGTCGTCGGAGTTGGTGCTCCAGGAGAGCCCCTCGTTCACCGAGGAGCAATCAGAGTTTACTTTTGACTGCAGCCCCTCCCACACTGAGGAATCAGAGCTGGCCTGTGACTAtgacccccccacccacactcCTGAGCCGGATGACATGGAGCAAGAACAGCGGAGTCCATCAATAAGCAGGGACCAATCAGAACCTGAGGGAGAGGGTATCCCCGTCCAAACTAAGCATCAATCAGAATGATTGGAGGGGATCCTTACTGTTGCCTCATGAATGTCTTACATGTGTAGAGGTCACTCCCCCCTGAAGTCCAGCCTAGATACCTGTGTTTCTAACATTGTGTGGCGTGAGAGAGCGAATGAGCGTGGGCATGAGTAGATGTGACATTCATTATTGTGCTTAAATGCTTGTTTTACAGGATAAAGCTGtttttattctatatttttattgCTGCCAACAAAATCCCATGAAAAGCTCCTCATCTCTGCCTCTAGGCTCGAGGCGACATTAGCTGCTGCTCGAATAAGCCGCCTGAATCTTTGACATGTGGTCAAAACCTTGAGTCTACATTATCCACTAATATGGGCTCAAGGTTTTGACAAGACGAATGTGTGGAATATAAAAGACGCTATCTCTGGTTATGCCGCATTAATTTTGATCCATTTTTGTATCTATCCATTGTGAGACTGACTATGTTAAAGCCGTGAAATGCTAATAAATCAGTGGGGTAACGAATGTTTAAGCGTATCTGAGTTTTAACTGCTGTTTTGGAGCTTTCGATAATATCCGCAGATGGAGTTCGCCCAGCTGTCATGGAATTGTAGATGTTAAAATATCTGTTTTTACTAAACACTTTAAGGACTTCTGTTAGCTTAAAAGTTGAGTTGAGACTACAGTTTCCAGGGTCAAGAATGGCCTTGAAAACTACAGTTTCATGACAACTTAGCAAGGTCTGATTAGGTGAAATGATGGAAAGCTTGAGCACATCTAATAATGGACCTTTAGGTGAGATTATTTAAGTCATTTCCTGAAACGGCTGGGCACTAGAGGTtaaattactcaagtaaatagtgcatttttTTCAGCCGTGGATTTTAGTCTAGTGAGCAGAAGGATGGTGTGTATATGGAATTTGActctttttaatagtttttgtgGAGCTCCACGAAGAAGGCAATGACAACACTagtttggtcttttcatggattttgttcaaaataaaagtatagaatattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttcccagcttcatagtgagtgagagagtgagtgaaagatCTGGACTCTTACACATAATTTGAGTCTTCATGCCAAAAACCATCCTGTTACATGACTTCAATTACATTGCAAgtagagagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158217 lncRNA upstream 5391 23982191 ~ 23982983 (+) True G117385
TU158203 lncRNA upstream 40172 23947926 ~ 23948202 (+) True G117374
TU158185 lncRNA upstream 54567 23929848 ~ 23933807 (+) True G117364
TU158175 lncRNA upstream 68345 23916758 ~ 23920029 (+) True G117359
TU158177 lncRNA upstream 69120 23916758 ~ 23919254 (+) False G117359
TU158236 lncRNA downstream 14643 24019654 ~ 24021055 (+) True G117398
TU158244 lncRNA downstream 31644 24036655 ~ 24043541 (+) True G117405
TU158246 lncRNA downstream 31880 24036891 ~ 24043541 (+) False G117405
TU158247 lncRNA downstream 31880 24036891 ~ 24042022 (+) False G117405
TU158250 lncRNA downstream 38958 24043969 ~ 24044484 (+) True G117406
XM_039814878.1 mRNA upstream 74079 23912771 ~ 23914295 (+) False hes6
XM_039814875.1 mRNA upstream 82845 23899208 ~ 23905529 (+) True LOC120567818
XM_039814876.1 mRNA upstream 82845 23900140 ~ 23905529 (+) False LOC120567818
XM_039815581.1 mRNA upstream 91463 23891144 ~ 23896911 (+) True snorc
XM_039815577.1 mRNA upstream 97406 23871207 ~ 23890968 (+) False gigyf2
XM_039816993.1 mRNA downstream 47341 24052352 ~ 24054704 (+) True LOC120569114
XM_039816224.1 mRNA downstream 49768 24054779 ~ 24057075 (+) True LOC120568612
XM_039816945.1 mRNA downstream 78685 24083696 ~ 24089942 (+) True LOC120569088
XM_039815960.1 mRNA downstream 133144 24138155 ~ 24142097 (+) False cdc20
XM_039815959.1 mRNA downstream 133155 24138166 ~ 24142097 (+) True cdc20
TU158169 other upstream 73876 23912664 ~ 23914498 (+) True hes6
TU158168 other upstream 79973 23905870 ~ 23908401 (+) True G117353
unassigned_transcript_561 other upstream 120049 23868254 ~ 23868325 (+) True trnaw-cca_13
TU158130 other upstream 133217 23850879 ~ 23855157 (+) True G117319
TU158062 other upstream 302570 23677079 ~ 23685804 (+) True LOC120567964
TU158239 other downstream 17430 24022441 ~ 24023659 (+) True G117400
XR_005640839.1 other downstream 44753 24049764 ~ 24054704 (+) False LOC120569114
XR_005640838.1 other downstream 44753 24049764 ~ 24054704 (+) False LOC120569114
TU158470 other downstream 662882 24667893 ~ 24675753 (+) False LOC120569045
TU158471 other downstream 668913 24673924 ~ 24675753 (+) False LOC120569045

Expression Profile