RNA id: XM_039815172.1


Basic Information

Item Value
RNA id XM_039815172.1
length 3564
RNA type mRNA
GC content 0.42
exon number 5
gene id LOC120568004
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 3183582 ~ 3200853 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAACtatcgttcagaaaacaggagttttcagacagcggagTGATGTCAACCTTGTTCCCAGATCTCAGATATTAACTAGGCTGAGCAATGGACTCTGGAGCCAGCAGGACGACGGAGGTGGCGGCGCTCGGCCGGCCTTTTTGCCTCGGGATGTTGTACGACTGCCGCCAAGACTCAATCGTCCCTGgaaTGACACTGTGGGACTGTGATGACCTGAAAGATCATATCAGAGAAAGACCGCAGAACTATAATGATTTTGAGATAGTGGCCTCTGAATCAATTGCAGATAAAACTTCAGCACTAAATGTTGAAGCATCACTTAAGGGAAGTTTTTTTTGTGGACTGGTAGAGGTTGGAGGATCGGCCAAATACCTGAATGACAATAAGACTTCCAAAAATCAGGCCAGAGTAACCCTGAATTACAAAGCTACCACAAAGGTCAAGGAACTGTCGATGGATCATCTTGGAAGAGGCAATGTGAAGCATCCATATGTCTTTGATAAAGGATTAGCAACACACGTAGTCACAGCTATTCTTTATGGGGCACAAGCCTTCTTTGTCTTTGACCGCGATGTGTCTGAAAACGAAGATCATCAAGACATTGAGGGCAACTTGAAGTTGGTGATCAAGAAGATACCCAAAATTACAATAGAGGGTGAAGGTTCCCTGAAAATAGAAGACAAGGATAAAGAAAATGTTGACAAATTCTCCTGCAGATTCTTTGGAGACTTTTCCCTTCAGAAATCTCCTACAACGTTTCAGGATGCTGTAGAAGTCTACCAAAGCCTCCCAAAATTGTTGGGAGCTAATGGAGAAAATGCAGTACCAATGAAGGTCTGGCTCTTGCCATTGACAACTTTAGATTCTTCTGCTGCTAAACTCATCCGTCAGATAAGTACAAGATTAGttaaaaaatcacaaaatgtccCGGAGGACTTCAGTGAGCTGGAAATAAGGTACAATGATGCACTGAGAACCACCACTGCACAGCAGTTCCCACAGATTagtaaaaagattaaaaaagttAGAGAAATGTGCTCTGAGTTCAAGCTGGATTTCCAACAAACCTTGGCAAAGAAACTTCCATCAatccgaggaggaggagaagaggaggatgggCTCGCAGAGATCCTGAAGAAGAGACATTCTTCTCCTTTCAACAGCAAAAACCTGAACGAGTGGATGGactgtaaagagagagaaattgacACATTGATGTCTTTCACCAAcatgatgaaaaacaccaagATCGTTCCATCTCAAAATCATCTGTACAAAGAAAGTTTCAGTGCAGACcatgctgtgtgttttgtcttcaCCTCACTTGGAAGTGCTGAACTGTACCTCTCAGCTTTATCAAACTACCTAAAACAAACACCAGAAGACCCTCAAGATACACATATTTACGATGTAGAGAAGGAACAATGGTACGCCTCAAAAACAGTATCAGAAGAAATGTGGTGTAAAGCAAAGCTCTTCAGTGACTTTGCAGAGGCCAACAAGGAGAACAAGAACATTAAATTCCTGACAGCGGGTTCAACAAATGAGACACAGAAAGGTTCAAGTATCTACCTTTATAAAGAAGGCTTTCCTGTCAGTGAGAACTTTGAGCCGCCTTCAAAGCCTGAAACAGTGACAGTAAGTGATATAGACCACAACAGTGTGACGCTGAAGATTTCTCCACCCAGATTTGGAGCAGAGGTCATCACCTCCTACTCTGTTGAGTACTGTGTcagtggagaggatggatggAAACAGAAGACAGCATCAAAAGCTGAAGAAGTCACAGTGAGCGATCTGAGTCCTAGCACAGAGTATATGTTCAGATGCAGAGCAGTGACCTCAATAGGTGTTGGGCCAGCCAATGAAGTCACTGGTTCCACTAAAACGTTACCTTGCAGCACTCCTGGAAAACCTCGAGTTGAACCAAACTCAAGAGAGATATCAGTTAGCTGGGAGAAACCTGCTGGGCTTGGAAAATATGTCCACATTTTGAGCTACATCGTGGAGTACGCCAAAACAGACAACAGGATGAAAGAGGAAGATCTCCAATGGAACAAAATGATGGCAGAAGCTGAAAAGGCTATAATATCAGAGCTTCAGTCAGAGACAGAATATGTTGTCAGGGTCAGATGTGATTGTGGTGAAGCTGGCAGAGGCAAAGAAAGCATCGCTGTTAAAGTCCGTACAACAAAGTTTACACTAACAGAATCCCTCAGAAGTACAAGCGAAAGGATGAATTCTGATTCACCATCAGTTTACAAACTGACTCTGACAGAAGAAGATATGAACATCGGTGGATGCCGAAGAGTCAGTTTtggcaaagaaagcagaaggcaGAATCGCACTATAATGCTTTTTGGGGTGACCGGATCAGGAAAGTCTACTCTGATCAATGCAATGATCAACTACATAGTTGGTGTAGAATGGAAGGACAGTTTCAGATTCAAATTAATTGACAAGCATCAGTCAAGATCACAAGTTGAAAGTCAGACCTCTGAAGTCACTGTGTACAAAATCAACCACCAGGATGGTTTTAAAATCAACTACTCACTGACCATTGTTGACACTCCAGGCTTTGAAGATACAGCAGGCATAGAAAGAGACGAGGAGATCATTGCACATCTGCGCAATCTCTTCTCCGCTGAGTGTTTGAATGACATTGACACTGTGTGTTTCTTAGCTCCGTCTGCTTTAACAAAACTCACACCATCAAAGAAATATTTGCTGTATTCTGTGCTCTCAATCTTTAGTGAAGATGTGGCAGAAAACATCCGGGTTCTGGTGACATCTGCAGATGGCCATCAACCACCAGTTCTGAAGGCAATCACTGATTCAGGTGTCCCATGTCCTAAAACAAAAGACGGGCTTCCAGTTCACTTCAAATTCAATAATTCAATGTTGTTTGCAGACAACAAATCATCTGCAGCAGACAGCATGAATGAGtatgatgatgaagatggagGATTTGATCAGATGTTTTGGAACATGGGAACAAAAGGCCTGAAGAGGTTCTTtgttgctttgaatgtcatAGACACCAAAAGCTTGACAATGACGAAAAAAATCCTCAGAGAAAGAAAGCAGCTTGAAAAGTCATATGAAGATTTGCAGAAGCAGGTTAAAACTGGGCTAGACAAGCTTGAAGAGATAAGAGGGACAACTGAATATTTCCATGTGCTGGATGAGGTGTACACACTGATAAAGAGATCTAGAGAGTGTTTCAACAAACTTGAAGAGAAAACACTGGAGCCAGATCCTCTCTCCACTTACAAGTACATTGACATGCTTATTGAGGGAGAGAGATCTGAGACCGAGCCAGGCTGGGAGCAACGAGTTCGGTCCCTGGAAGCCATACAAAAACCATATCCATGTTTTTTTCATACTTCAGGAAAATGTTTAAATCTAGACCCTAACAAGACCTAAACAGATAACCATCAACACAAAGAGGAGGTCCATTCTGAAAAAAGGGACACAGAGTATCGATACTGAGATACTTAGACATACATGACTGTCCAAGAAAAACTCAATCCTAGATAAAGCCTTTTCATTTGTACAAAAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150446 lncRNA downstream 37705 3070612 ~ 3145877 (-) True G111662
TU150494 lncRNA downstream 65548 3117616 ~ 3118034 (-) True G111690
TU150464 lncRNA downstream 83249 3096244 ~ 3100333 (-) False G111678
TU150463 lncRNA downstream 83249 3096596 ~ 3100333 (-) True G111678
TU150466 lncRNA downstream 84543 3098400 ~ 3099039 (-) True G111680
TU150504 lncRNA upstream 50601 3251454 ~ 3291846 (-) True G111700
TU150477 lncRNA upstream 53622 3254475 ~ 3304338 (-) False G111683
TU150485 lncRNA upstream 58204 3259057 ~ 3304338 (-) False G111683
TU150484 lncRNA upstream 60114 3260967 ~ 3304338 (-) False G111683
TU150475 lncRNA upstream 60207 3261060 ~ 3304338 (-) False G111683
XM_039815187.1 mRNA downstream 2277 3158202 ~ 3181305 (-) False LOC120568011
XM_039815185.1 mRNA downstream 2277 3158202 ~ 3181305 (-) True LOC120568011
XM_039815188.1 mRNA downstream 5654 3158202 ~ 3177928 (-) False LOC120568011
XM_039815186.1 mRNA downstream 5654 3158202 ~ 3177928 (-) False LOC120568011
XM_039815184.1 mRNA downstream 5654 3158202 ~ 3177928 (-) False LOC120568011
XM_039815175.1 mRNA upstream 3434 3204287 ~ 3229147 (-) False LOC120568005
XM_039815173.1 mRNA upstream 11695 3212548 ~ 3229147 (-) False LOC120568005
XM_039815174.1 mRNA upstream 11695 3212548 ~ 3229147 (-) True LOC120568005
XM_039815178.1 mRNA upstream 33515 3234368 ~ 3254369 (-) True LOC120568006
XM_039815177.1 mRNA upstream 42022 3242875 ~ 3254369 (-) False LOC120568006
TU150424 other downstream 41712 2985332 ~ 3141870 (-) False LOC120568519
TU150430 other downstream 191736 2985332 ~ 2991846 (-) False LOC120568519
TU150296 other downstream 605568 2573304 ~ 2578014 (-) True G111573
TU150255 other downstream 795285 2341496 ~ 2388297 (-) True LOC120567903
unassigned_transcript_498 other downstream 1340588 1842454 ~ 1842994 (-) True LOC120567886
XR_005640646.1 other upstream 3434 3204287 ~ 3229147 (-) False LOC120568005
TU150514 other upstream 113793 3314646 ~ 3369939 (-) True LOC120568520
TU150904 other upstream 834689 4035542 ~ 4036963 (-) True G111942
TU151047 other upstream 1037249 4238102 ~ 4238670 (-) True G112043
TU151048 other upstream 1037249 4238102 ~ 4238670 (-) False G112043

Expression Profile