RNA id: XM_039815174.1


Basic Information

Item Value
RNA id XM_039815174.1
length 3473
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC120568005
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 3204287 ~ 3229147 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGATCTAGGGGCGTTTCTCTCTCAGAAAGGATATAATATCTGAAACTACAGCTGTGCTTTAAAGGATCACACACATCTTCACTTCCAGGCTGAGCAATGGACTCTGGAGCCAGCTGGACGATAGAGATGGCGGCGCTCGGCCGGCCTTTCTGCCTCGGGATGTTCTACGACTGCCGCCAAGACTCAATCATCCCTGgaaTGACACTGTGGGACTGTGATGACCTGAAAGATCATATCAGAGAAAGACCGCAGAACTATAATGATTTTGAGATAGTTGCCTCTGAATCAATTGCAGATAAAACTTCAGCACTAAATGTTGAAGCATCACTTAAGGCAAGTTTTTTTAGTGGACTGGTACAGGTTGGAGGATCGGCCAAATACCTGAATGACAGTAAGACTTCCAAAAATCAGGCCAGAGTAACTCTGAATTACAAAGCTACCACAAAGGTCAAGGAACTGTCGATGGATCATCTTGGAAGAGGCAATGTGAAGCATCCGTATGTCTTTGATAAAGGATTAGCAACACATGTAGTCACAGCTATTCTTTATGGGGCACAAGCCTTCTTTGTCTTTGACCGTGAGGTGTCCGAAAAGGAAGATCATCAAGACATTCAGGGCAACTTGAAGGTGATGATCAATAAGATACCCAGCATTACAATAGAGGGTGAAGGTTCCCTGACAATGGAAGACAAGGACAGAGAAAATGTTGACAAATTCTCCTGCAGATTCTTTGGAGACTTTTCCCTTCAGAAATCTCCTACAACCTTTCAGGATGCTGTAGAAGTCTACCAAAGCCTCCCAAAACTGTTGGGAGCCAACGGAGAAAATGCAGTACCAATGAAGGTCTGGCTGTTGCCCTTGACAACTTTAGATTCTTCTGCTGCTAAACTCGTCCGTCAGATAAGTACAAGATTAGttaaaaaatcacaaaatgtcctAGAGGACTTCAGTGAGCTGGAAATAAGGTACAATGATGCACTGAGAACCACCACTGCACAGCAGTTCCCACAGATTagcaaaaagattaaaaaagttAGAGAAATGTGCTCTGAGTTCAAGCTGGACTTCCAACAAACCTTGGCAAAGAAACTTCCGTCAatccgaggaggaggagaagaggaggatgggCTCGCAGAGATCCTGAAGAAGAGACATTCTTCTCCTTTCAACAGCAAAAACCTGAACGAGTGGACGGactgtaaagagagagaaattgacACATTGATGTCTTTCACCAAcatgatgaaaaacaccaagATCGTTCCATCTCAAAATCATCTGTACAAAGAAAGTCTCAGTGCAGACcatgctgtgtgttttgtcttcaCCTCAATTGGAAGTGCTGAACCGTACCTCTCAGCTTTATCAAACTACTTAAAACAAACACCAGAAGACCCTCAAGATACACATATTTACGATGTAGAGAAGGAACAATGGTACACCTCAAAAACAGCATCAGAAGAAATGTGGTGTAAAGCAAAGCTCTTCAGTGACTTTGCAGAGGCCAACAAGGAGAACAAGAAGATTAAGTTCCTGACAGCGGGTTCAACAAATGAGACACAGAAAGGTTCAAGCATCTACCTTTATCAAAAAGGCAATTCTATCAATGAGAACTTTGAGCCGCCATCAAAGCCTGAAACAGTGACAGTAAGTGATATAGACCACAACAGTGTGACTCTGAAGGTTTCTCCACCCAGATTTGGAGCAGAGGACATCACCTCCTACTCTGTTGAGTACTGTGTcagtggagaggatggatggAAACAGAAGACAGCATCAAAAGCTGAAGAAGTCACAGTGAGCGATCTGAGTCCGAACACAGAGTATATGTTCAGATGCAGAGCAGTGACCTCAGTAGGTGTTGGGCCAGCCAATGAAGTCAGTGGTTCCACTAAAACGTTACCTTGCAGCCCTCCTGGAAAACCTCGAGTTGAACCAAACTCAAGAGAGATATCTGTTAGCTGGGAGAAACCTGCTGAGCTTGGACAAGATGTCCACATTTTGAGCTACATCGTGGAGTACGCCAAAACAGACAACGGGATGAAAGAGGAAGATCTCCAATGGAATGAAATGATGGCAGGAGCTGAAAAGGCAATAATATCAGAGCTTCAGTCAGAGACAGAATATGTTGTCAGGGTCAGATGTGATTGTGGTGAAGCTGGCAGAAGCAAAGAAAGCATCCCTGTTAACGTCCGCACAACAAAGTTTACGCTAACAGAATCCCTCAGAAGTACAAGCAAAAGGATGAATTCTGATTCACCATCAGTTTACAAACTGACTCTGACAGAAGAAGATATGAACATCGGTGGATGCCGAAGATTCAGTTTTGGCAAAGAAAGCACAAGGCAGAATTGCACTATAATGCTTTTTGGGGTGACCGGATCAGGAAAGTCTACTCTGATCAATGCGATGATCAACTACATAGTTGGTGTAGAATGGAACGACAGTTTCAGATTCAAATTAATTGATGAGGATCAGTCCAGATCACAAGCTGAAAGCAAGACCTCTGAAATCACTGTGTACAAAGTCAACCACCAGGATGGTTTTCAAATCAACTACTCACTGACCATTGTTGACACTCCAGGCTTTGAAGATACAGGAGGCATAGAAAGAGATGAGGAGATCATTGCACAGCTACGCAGTCTCTTCTCTGCTGAGTGTTTCAGTGAAATTGCCGCTGTGTGTTTCGTAGCTCAGTCTGCTTTAGCACGACTCACACCATCACAGAAATGTTTGTTGGATTCTGTGCTCTCAATCTTTGGCAAAGATGTGGCAGAAAACATCCGGGTTCTGGTGACATCTGCAGACAGCCAGCAACCACCAGTTCTAGAGGCAATCACTGCTTCAGGTGTCCCATGTCCTAAAACAAAAGATGGGCTTCCAGTTCacttcaaatttaataattcagCATTGTTTACAGACAACAAATCATCTGCAGCAGACAGCATGAGTGAGtatgatgatgaagatggagGATTTGATCAGATGTGTTGGAACATGGGAACAAAAGGCATGAAGAGGTTCTTTGTTGCTTTAAATGTCATAGACACCAAAAGCTTGACAATGACGAAAAAAGTCCTCGGAGAAAGAAAGCAGTTTGAGAAGCCATATGAAGATTTGCAGAAGCAGGTTAAAACTTGGCTAGCCAAGCTTGAGGAGATCAATGGGATATTTGGTTATTTTCCAGTGGCTGAGGTGAACACACTGATAAAGAGATCTAGGGAGTGTTTCAACAAACTTAAAGAGAAAACACTGAAGCCAGATCCTCTCTCTACTTCCGAGTACATTGACATGCTTATTGAGGGAGAGAGTTCtgaggccaagccaggctgggAGCAACGAGTTCGGTCCCTGGAAGTCGTTAGGTTTGCAGCGGTACATCTATTCTAGGGCTGCatctaacgattattttaataatcgattaatctgttgattattttttcgattaatcgatgaatcggataaaaaaaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150489 lncRNA downstream 3888 3140019 ~ 3208660 (-) True G111685
TU150494 lncRNA downstream 94514 3117616 ~ 3118034 (-) True G111690
TU150464 lncRNA downstream 112215 3096244 ~ 3100333 (-) False G111678
TU150504 lncRNA upstream 22307 3251454 ~ 3291846 (-) True G111700
TU150477 lncRNA upstream 25328 3254475 ~ 3304338 (-) False G111683
TU150485 lncRNA upstream 29910 3259057 ~ 3304338 (-) False G111683
TU150484 lncRNA upstream 31820 3260967 ~ 3304338 (-) False G111683
TU150475 lncRNA upstream 31913 3261060 ~ 3304338 (-) False G111683
XM_039815172.1 mRNA downstream 11695 3183582 ~ 3200853 (-) True LOC120568004
XM_039815188.1 mRNA downstream 34620 3158202 ~ 3177928 (-) False LOC120568011
XM_039815178.1 mRNA upstream 5221 3234368 ~ 3254369 (-) True LOC120568006
XM_039815177.1 mRNA upstream 13728 3242875 ~ 3254369 (-) False LOC120568006
XM_039815176.1 mRNA upstream 13728 3242875 ~ 3254369 (-) False LOC120568006
XM_039816093.1 mRNA upstream 119928 3349075 ~ 3371775 (-) False LOC120568520
XM_039816976.1 mRNA upstream 219566 3448713 ~ 3456534 (-) False LOC120569104
TU150424 other downstream 70678 2985332 ~ 3141870 (-) False LOC120568519
TU150430 other downstream 220702 2985332 ~ 2991846 (-) False LOC120568519
TU150296 other downstream 634534 2573304 ~ 2578014 (-) True G111573
TU150255 other downstream 824251 2341496 ~ 2388297 (-) True LOC120567903
unassigned_transcript_498 other downstream 1369554 1842454 ~ 1842994 (-) True LOC120567886
TU150514 other upstream 85499 3314646 ~ 3369939 (-) True LOC120568520
TU150904 other upstream 806395 4035542 ~ 4036963 (-) True G111942
TU151047 other upstream 1008955 4238102 ~ 4238670 (-) True G112043
TU151048 other upstream 1008955 4238102 ~ 4238670 (-) False G112043
TU151050 other upstream 1008955 4238102 ~ 4238670 (-) False G112043

Expression Profile