RNA id: XM_039815177.1


Basic Information

Item Value
RNA id XM_039815177.1
length 4284
RNA type mRNA
GC content 0.42
exon number 4
gene id LOC120568006
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 3234368 ~ 3254369 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGGAAATTCTACTCTGATCAATGCAATGATCAACTACATAGTTGGTGTAGAATGGAAGGACAGTTTCAGATTCAAATTAATTGATGAGGATCAGTCAAGATCACAAGCTGaaagtcaattcaattcaattttattttatttatagtatcaaaacaTAACAAGAGTTTTCTCAAGACACgtaacagatagagtaggtctagaccacactctataatttacaaagacccaacaattacagtaaccTCTAAAGTCACTTTGTACAAAATCAAACAGAACAGTCTTGATACTTAGAGACGGAGACTTTAATAACGTTGACCAAGAAAAGCTCAAACATAAATGTGTCCAAGATAACGACTTTTTTTGTACAAACACATTTCTCTAGGAGTTATTTGCATGTGCTGTTCACCAAGAATGGAAACAGATAAATGGGTTTGTGTATGGCAAAGGAAAGGTAACCCTGTGTTGTATATTGACAACAAATGAACCTTGAAACCTGCTGCTTTTTCAGCTATTCATTAGGTGgatgaggaaaggaaggaggtcaGTAGTAACAGACTgaagaagagagaaagcaaAAGAAGATAGTAAAGGTTATCCTTCTCCATACTATAacgtacatgtgtgtgtactgaGAGGTGGAGCAACACTGAAAGAGCATAGCTTGTACGTCACATTTCCCATTTCTTCAGATTAAAGATAGTCTCAGATACCGCAGTGCTGCGGTGGAGAcaagtctctgtgtttctctctgaagAACAATTCCACAGAATACATCAGGTTTTTATCAACAAACAGCAGAATCTGCGCCAACAGCTGTGATGTCAACCTTGTTCCCAGATCTCAGATATTAACTAGACTGAGCAATGGACTCTGGAGCCAGCAGGACGATGGAGATGGCGGCGCTCGGCCGGCCTTTTAGCCTCGGGATGTTGTACGACTGCCGCGAAGACGCAATCGTCCCTGgaaTGACACTGTGGGACCGAGATGACCTGATTAGTCATATTGGAGAAAGACAACAGAACTATAATGATTTTGAGATAGTTGCATCTGAATCAATTGCAGATAAATCTTCAGCACTAAATGTTGAAGCATCACTTACAGCAAGTTTTTTAAGTGGACTGGTAGAGGTTGGAGGATCGGCCAAATACCTGAATGACAGTAAGACTTCCAAAAATCAGGTCAGAGTAACACTGAACTACAAAGCTACCACAAAGGTCAAGGAACTGTCAATGGATCATCTTGGAAGAGGCAATGTGAAGCATCCGTATGTCTTTGATAAAGGATTAGCAACACACGTAGTCACAGCTATTCTTTATGGGGCACAAGCCTTCTTTGTCTTTGACCGCGATGTGTCCGAAAACGAAGATCATGAAGACATTCAGGGCAACTTGAAGTTGGTGATCAAGAAGATTCCCAGCTTTGCCATAGAAGGTAAAAGTTCCCTGAAAATTGAAGACAAGCACAAAGAAAATGTTGACAAATTGTCCTGCAGATTCTTTGGAGACTTTTCCCTTACGAAATCTCCTACATCCTTTCAGGATGCTGTAGAAGTCTACCAAAGCCTACCAAAACTGTTGGGAGCTAACGGAGAAAATGCAGTACCAATGAAGGTCTGGCTGTTGCCATTGACAACTTTAGATTCTTCTGCTGCTAAACTCGTCCGTCGGATAAGTGCAAGGTTAGTTAAAGAATCAGAAAATGTCTTAGAGAACTTCAGTGAGCTAGAAATAAGGTACAATGATGCACTGAGAACCACCACTGCACAGCAGTTCCCACAGATTagcaaaaagattaaaaaagttAGAGAACTGTGCTTTGAGTTCAAGCTGGACTTCCAACAAACCTTGGCAAAGAAACTTCCATCAatccgaggaggaggagaagaggaggatgggCTCGCAGAGATCCTGAAGAAGAGACATTCTTCTCCTTTCAACAGCAAAGACCTGAACAACTGGATGGactgtaaagagagagaaattgacACATTGATATCTTTCACCAAcatgatgaaaaacaccaagATTGTTCCATCTCAAAATTATCTGTACAAAGAAAGTCTCAGTGCAGACcatgctgtgtgttttgtcttcaCCTCATTGGGACGTGATGAGCCGTACCTCTCAGCTTTATCAAACTacttaaaacaaacaacagacgACTCTCTGGATGCACATACTCATACATGCCAGGAAAAATGGTACGCCTCAAAAGAAGTAGCACAAGTGAGGATTAAAGCAAAGCTCTTCAGTGACTTTGCAGAGGCCAACAAGGAGAACAAGAACATTAAGTTCCTGACAGTGGGTTCAACAAATGAGACACAGAAAGGTTCAAGCATCTACCTTTATAAAGAAGGCTTTCCTGTCAGTGAGAACTTTGAGCCGCCTTCAAAGCCTGAAACAGTGACAGTAAGTTATATAGACCTTAACAGTGTGAGGCTGAAGATTTCTCCACCCAGATTTGGAGCAGAGGACATCACCTCTTACTCTGTTGAGTACTGTGTcagtggagaggatggatggAAACAGAAGACAGAATCAAAAGCTGAAGAAGTCACAGTGAGCGATCTGAGTCCTAACACAGAGTATATGTTCAGATGCAGAGCAGTGACCTCAGTAGGCGTTGGGCCAGCCAATAATGTCAGTGGTTTCACTAAAACGTTACCTTGCAGCCCTCCTGGAAAACCTCGAGTTGAACCGAACTCAAGAGAGATATCTGTTAGCTGGGAGAAACCTGCTGAGCTTGGACAAGATGTCCATAATTTGAGCTACATCGTGGAGTACGCCAAAACAGACAACGGGATGAAAGAGGAAGATCTCCAATGGAACGAAATGATGGCAGGAGCTGAAAAGGCAATAATATCAGAGCTTCAGTCAGAGACAGAATATGTTGTCAGGGTCAGATGTGATTGTGGTAAAGCTGGCAGAAGCAAAGAAAGCATCCCTGTTAACGTCCGTACAACAAAGTTTACGCTAACAGAATCCTTCAAAAGTGCAAGCGAAAAGATGAATTCTGATTCACCATCAGTTTATAAACTGACTCTGACAGAAGAGGATATGAACATCAGTGGGGGTCGAAGATTCAGTTTTGGCAAAGAAAGCACGAAGCAAAATCGCACTATAATGCTTTTCGGTGTGACCGGATCAGGAAAGTCCACTCTGATCAATGCAATGATCAACTACATAGTTGGTGTAGAATGGAAGGACAGTTTCAGATTCAAATTAATTGACAAGGATCAATTGAGATCACAAGCTAAAAGCAAGACCTCTGAAGTCAATGTGTACAAAATCAACCACCAGGAGGGTTTTAAAATCAACTACTCACTGACCATTGTTGACACTCCAGGCTTTGAAGATACAGGAGGCATAGAAAGAGACGAGGAGATCATTGCACATCTGCGCAATCTCTTCTCCGCTAAGCAAAGTGTTAGTGAAATTGACGCTGTGTGTTTTGTAGCTCTGGCTACTTTAACACAACTCACACCATCACAGAAATGTTTGTTGGATTCTGTGCTCTCAATCTTTGGCAAAGATGTGGCAGAAAACATCCGGGTTCTGGTGACATCTGCAGACGGCCAGCAACCACCAGTTCTAAAGGCAATCGCTGCTTCAGATGTCCCATGTCCTAAATCAAAAGACAGGCTTCCAGTTCACTTCAAATTCAATAATTCTGCGTTGTTTACAGACAACATATCATCTGCAGCAGACAGCATGAGTGAgtatgatgaagatgatgatttAGGCTTTCATCAGATGTGTTGGAACATGGGAACAAACAGCCTGAAAAGATTCTTtgttgctttgaatgtcatAGACACCAAAAGCTTGACAATGACTAAAGAGGTCCTCAGAAAAAGAGAGCAGCTTCGGAAATTTATATAAAACTTTGCAAACGCAGGTTAATTCTGGGCTAGCTAAGCTTGAGGACGTAAAAGGGACAACTGAACATTTTCATCTGATGGATGAGGTGGACACACTGATAGAGAGATCTACTGAGTGTTTCAACAAACTTAAAGAGAAAACACTGAAGCCAAATCCTCTCTTTACTGCCAAGTACATTGACATGCTTATTGACGGAGAGATATCtgaggccaagccaggctggaAGCAACGAGTTCTGTCCCTGGAAGCCATACAAAAACGATATCACCGTTTTTTTATACTTCACGAAGAAGTTTGAATCTAGACCCTAACAAGACCTAAACagagggacattctaaaacgcttaacgtgcaAAAatttaacgtggtttaatgtacctaaacaacgaccaatgatcaccaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150489 lncRNA downstream 34215 3140019 ~ 3208660 (-) True G111685
TU150494 lncRNA downstream 124841 3117616 ~ 3118034 (-) True G111690
TU150464 lncRNA downstream 142542 3096244 ~ 3100333 (-) False G111678
TU150477 lncRNA upstream 106 3254475 ~ 3304338 (-) False G111683
TU150485 lncRNA upstream 4688 3259057 ~ 3304338 (-) False G111683
TU150484 lncRNA upstream 6598 3260967 ~ 3304338 (-) False G111683
TU150475 lncRNA upstream 6691 3261060 ~ 3304338 (-) False G111683
TU150483 lncRNA upstream 6691 3261060 ~ 3304338 (-) False G111683
XM_039815175.1 mRNA downstream 13728 3204287 ~ 3229147 (-) False LOC120568005
XM_039815173.1 mRNA downstream 13728 3212548 ~ 3229147 (-) False LOC120568005
XM_039815174.1 mRNA downstream 13728 3212548 ~ 3229147 (-) True LOC120568005
XM_039815172.1 mRNA downstream 42022 3183582 ~ 3200853 (-) True LOC120568004
XM_039815189.1 mRNA downstream 72940 3158202 ~ 3169935 (-) False LOC120568011
XM_039816093.1 mRNA upstream 94706 3349075 ~ 3371775 (-) False LOC120568520
XM_039816976.1 mRNA upstream 194344 3448713 ~ 3456534 (-) False LOC120569104
XM_039816975.1 mRNA upstream 194344 3448713 ~ 3456534 (-) False LOC120569104
XM_039816974.1 mRNA upstream 194344 3448713 ~ 3456534 (-) False LOC120569104
XM_039816973.1 mRNA upstream 194344 3448713 ~ 3456534 (-) False LOC120569104
XR_005640646.1 other downstream 13728 3204287 ~ 3229147 (-) False LOC120568005
TU150424 other downstream 101005 2985332 ~ 3141870 (-) False LOC120568519
TU150430 other downstream 251029 2985332 ~ 2991846 (-) False LOC120568519
TU150296 other downstream 664861 2573304 ~ 2578014 (-) True G111573
TU150255 other downstream 854578 2341496 ~ 2388297 (-) True LOC120567903
TU150514 other upstream 60277 3314646 ~ 3369939 (-) True LOC120568520
TU150904 other upstream 781173 4035542 ~ 4036963 (-) True G111942
TU151047 other upstream 983733 4238102 ~ 4238670 (-) True G112043
TU151048 other upstream 983733 4238102 ~ 4238670 (-) False G112043
TU151050 other upstream 983733 4238102 ~ 4238670 (-) False G112043

Expression Profile