RNA id: XM_039815180.1


Basic Information

Item Value
RNA id XM_039815180.1
length 2266
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC120568007
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 2867255 ~ 2889739 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CATCACTAagaggtgaaatggcgcagaaaggagttcagctggaACGGGAGACCTTCTCTTGTTCgatctgtctggatctactgaaggatccggtgactactTGCTGTGGACACAACTACTGCATGAACTGCATTAAAAGCCACTGGGATGAAGAGGATCATAAGAACAGCCACAGCTGTCCTCAGTGCAGGCAGACAttcacaccgaggcctgtcctgctgaaaaacaccatgttagcagatttagtgaaagagctgaagaagactggactccaagctgctcctgctgatcactgctatgctggagctgaagatgtggcctgtgatgtctgcactggGAGGAAACTAAAAGCCATCAAGTCCTGTCTGGTCTGTTTGGCCTCTTACTGTGATCAACACCTCCAGCCTCATTATGATGTGGCTCCgttaaagaaacacaagctggtggagccctccaagaagctccaggagaacgtctgctctcgtcatgatgaggtgatgaagatgttctgccgtactgatcagcagcttatctgttatctctgcttaatggaggaacataaaggccacgacacagtctcagctgcagcagaaaggactgagaggcagaaaaagcTTGAGGGGAGTCGacaaaacatccagcagagaatccaggacagagagaaagatgtgaagctaCTTCAACAGCAGGTAGAGGTGATCAATGACTCTgctgataaagcagtggaggacagcgagaAGATCTTCACTGAGCTGATCTGTCTCatggagaaaagaagctctgatgtgaagcagcaggtcagatcccagcagaaaagtgaagtgagtcgagtcaaagagcttcagaagaagctggagcaggagatcactgagctgaagaggaaagacgctgagctgaagaagctctcacacacagaggatcacaaccagtttctacacaactacccctcactgtcactcagccaatcagcatccagcATCGATATCTGCCATCTGAGCTACTTTGAGGACGTGACAGCAGCCGTGttagaagtcagagataaactacaggacgtTCTCAGAGAGGAATGGACAAACTGctcactgacagggactgaagtggacgttttactgccacaaccaaaacccaagaccagagctgaattcttaaaatattcacgtgacatcacactggatccaaacacagcacacacactgctgttattatctgaggggaacagaaaaacaacaagaatGAGAAAACATCAGtcttattctagtcacccagacagattcactgGATGTcctcaggtcctgagtagagagagtctgactggacgttgttactgggaggtagAGAAGATGGGTAACATTTCTGTAGCAGTCTCATACAAGAATATCGGCAGAGCAGAGAGATTGTATGAAGGTTTGTTTGGATTCAATGAAAAATCCTGGGCTTTAGACAGAAGCAGTTACTATTGTTACAACAAAGTCAGAAGAATCCTCTCAGGTCCTgtgtcctccagagtaggagtgtacctggatcacagtgcaggtattctgtccttctacagagtctctgaaaccatgactctcctccacagagtccagaccacattcactcagcccctCTATGCTGGTtttactatttattctcctggaggcactgctgagttgtgtaaactgaaatagacagaagtcatttaagggttaatCTCTGTTTTAACTCTAACTTATttagtctccatgtttgttgctgAGAGCTGATTGTTTTGGCATTTCTTCATTGCACAGAGATCAACTGTCAGTCAAACATTATGGGATGTCCTTTGACATCTTGTCATTAGttgttgtgtaaatgtttgagtttcTTTAGGTGGTGCTCCTTCCTGTGTCTGTTTAGCCACGGAGGCTATCACTGCTCATGATTGTTGACTTGAACTGAGAATGAAAACTTCTCTactctctaaatgttttaatatttgtttatatgtatttgtatgttgtttCTCTTCCACATgggtgtaacacacacacacacacacactctcaccagATCGCCTTTATTCTCTTTACTTTGTTCTCTTTAAGAAATCTATAATCACATGTATCTGTTTAACCTGATCATAATCAAAAGAGATTATTCAGTATTCTCTTCAACCTATCTGAGGGTCAAACACATTGATTGTGTGGATGAAGTGAATCTGTAAATGTAATCGTTGAATTATATTCACTTATGTTTGTATTGCTATTTTtaatgtaataaaatgtttaattatgAAGTATTa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150375 lncRNA downstream 19869 2843728 ~ 2847386 (-) True G111626
TU150338 lncRNA downstream 40099 2784518 ~ 2827156 (-) True G111591
TU150369 lncRNA downstream 65795 2801000 ~ 2801460 (-) True G111620
TU150337 lncRNA downstream 77982 2783909 ~ 2789273 (-) True G111590
TU150363 lncRNA downstream 95009 2768835 ~ 2772246 (-) True G111615
TU150381 lncRNA upstream 6258 2895997 ~ 2896199 (-) True G111632
TU150383 lncRNA upstream 8476 2898215 ~ 2900223 (-) False LOC120568519
TU150390 lncRNA upstream 42630 2932369 ~ 3010514 (-) False G111638
TU150391 lncRNA upstream 42630 2932369 ~ 3010514 (-) False G111638
TU150394 lncRNA upstream 42630 2932369 ~ 3010514 (-) False G111638
XM_039815183.1 mRNA downstream 3521 2859574 ~ 2863734 (-) True LOC120568010
XM_039815190.1 mRNA downstream 9632 2854923 ~ 2857623 (-) True LOC120568013
XM_039815182.1 mRNA downstream 14867 2850025 ~ 2852388 (-) True LOC120568009
XM_039816547.1 mRNA downstream 138709 2703359 ~ 2728546 (-) True lamc2
XM_039816623.1 mRNA downstream 204490 2625838 ~ 2662765 (-) False smg7
XM_039816092.1 mRNA upstream 9783 2899522 ~ 3142454 (-) True LOC120568519
XM_039815187.1 mRNA upstream 268463 3158202 ~ 3181305 (-) False LOC120568011
XM_039815185.1 mRNA upstream 268463 3158202 ~ 3181305 (-) True LOC120568011
XM_039815188.1 mRNA upstream 268463 3158202 ~ 3177928 (-) False LOC120568011
XM_039815186.1 mRNA upstream 268463 3158202 ~ 3177928 (-) False LOC120568011
TU150296 other downstream 289241 2573304 ~ 2578014 (-) True G111573
TU150255 other downstream 478958 2341496 ~ 2388297 (-) True LOC120567903
unassigned_transcript_498 other downstream 1024261 1842454 ~ 1842994 (-) True LOC120567886
unassigned_transcript_497 other downstream 1034160 1832181 ~ 1833095 (-) True LOC120568499
unassigned_transcript_496 other downstream 1045705 1820750 ~ 1821550 (-) True LOC120567887
TU150424 other upstream 95593 2985332 ~ 3141870 (-) False LOC120568519
TU150430 other upstream 95593 2985332 ~ 2991846 (-) False LOC120568519
XR_005640646.1 other upstream 314548 3204287 ~ 3229147 (-) False LOC120568005
TU150514 other upstream 424907 3314646 ~ 3369939 (-) True LOC120568520
TU150904 other upstream 1145803 4035542 ~ 4036963 (-) True G111942

Expression Profile