RNA id: XM_039815181.1


Basic Information

Item Value
RNA id XM_039815181.1
length 2170
RNA type mRNA
GC content 0.46
exon number 1
gene id LOC120568008
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 2878147 ~ 2880316 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCGTCCTGGAATGTAGAAAAGCTTGATAACTCCTTCCTTTGTTGTGTGATGACAATGAACACTAAACCCTTGATGAGACAGTCACAGAATACTCACAGTCAGGCAGTCATCACTAagaggtgaaatggcgcagaaaggagttcagctggaccCGGAGACCTTCTCTTGTTCgatctgtctggatctactgaaggatccggtgactactTCCTGTGGACACAACTACTGCATGAACTGCATTAAAAGCCACTGGGATGAAGAGGATCATAagaacatccacagctgtcctcagtGCAGGCAGACgttcacaccgaggcctgtcctgctgaaaaacaacttgttagcagatttagtggaggagctgaagaagactggactccaagctgctcctgctgatcactgctatgctggagctgaagatgtggcctgtgatttCTGCACTGGGAGAAAACTAAAAGCCATCAAGTCCTGTTTGATGTGTCTGATGTCTTACTGTGATCAACACCTCCAGCCTCATTATGATGTGGCTCAgttaaagaaacacaagctggtggagccctccaagaagctccaggagaacatctgctctcgtcatgatgaggtgatgaagatgttctgccgtactgatcagcagcttatctgttatctctgcttaatGGAGGAACATAAAGGCCATGACACAGTCTCTGCTGCAGCAGAAAGTAGTGAGAGGCAGAAAAAGCTTGAGGGGAGTCAACAcaacatccagcagagaatccaggacagagagaaagatgtgaagctgcttcaacagcaggcggaggccatcaatcgctctgctgataaagcagtggaggaaAGCGAGAAGATCTTCTCTGAGCTGATCTgtctcctggagaaaagaagctctgatgtggagcagcaggtcagatcccagcagaaaagtgaagtgagtcgagtcaaagagcttcaggagaagctggagcaggagatcactgagctgaagaagaaagacgctgagctgaagaagctctcacacacagaggatcacaaccagtttctacacaactacccctcacAATCAGCATCCAGCATCGATATCTGTCCTCTGAGCTACTTTGAGGACATGACAGCGGCTGTatcagaagtcagagataaactacaggacgtTCTGAGAGAGAAGTGGACAAACGTCTCACTGGCAGGAAAGGCTGTAGGACTGGCCGTAAACAGAAGACAGAGCAAACAGGACCCTCATGTGAGAAGGGACCACAAAGATTTGAGATGCTGGAAGGGGCCCACAGAGAATGCGTATGTACAGGGACCAGAAGTTTTTGCTACACCCCTGCTGACTCTAGAGGATTTTTTAGTGTcacaaccagagcccaagaccagagctgacttCTTACAATATTCACGtgaaatcacactggatccaaacacagcacacacacatctgttattatctgaggggaacagaAAAGCAACAAGAATGAGAAAACATCAGGcttattctagtcacccagacagattcactaGATGGcctcaggtcctgagtagagagagtctgactggacgttgttactgggaggtggagaggagagggtaTGGAGTAGATATAGCAGTTgcatacaagaatatcagcagagcagggaGGTCGAATGAATGTTTGTTTGGATTCAATGACAAATCATGGCCGTTACATTGGGAAAgaaattgttatttattttgttacaaCAAAGTCAAAACTCCCGTCTCAGGTcctgagtcctccagagtaggagtgtacctggatcacagtgcaggtattctgtccttctacagcgtctctgaaaccatgactctcctccacagagtccagaccacattcactcagccgctcTATGCTGGTTTTAGTCTTGATTATTCTGGAACCACTGCTGAGTTGTGTGAGCTGAAGTAGACGgaagtcatttaagggttaatCTCTGTTTTAACTCTTCAACTTATTTAGTCTTCATGTTTGTTGCTGAGAGCTGATTGTTGTGACATTTCTTCACTGCACAGAGatcagctgtcagtcaaacaTTATGGGATGTCCTTTGGCATCTGGTCATTAGttgttgtgtaaatgtttgagtttcTTTAGGTGACTCCTTCCTGTGTCTGTTTAGCCACGGAGGCTATCACTGCTCATGATGATGTTTGTTG

Function

GO: NA

KEGG:

id description
ko04110 Cell cycle
ko04115 p53 signaling pathway
ko04218 Cellular senescence

JBrowse2

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Neighbor

RNA id RNA type direction distance location representative gene id
TU150375 lncRNA downstream 30761 2843728 ~ 2847386 (-) True G111626
TU150338 lncRNA downstream 50991 2784518 ~ 2827156 (-) True G111591
TU150369 lncRNA downstream 76687 2801000 ~ 2801460 (-) True G111620
TU150337 lncRNA downstream 88874 2783909 ~ 2789273 (-) True G111590
TU150363 lncRNA downstream 105901 2768835 ~ 2772246 (-) True G111615
TU150381 lncRNA upstream 15681 2895997 ~ 2896199 (-) True G111632
TU150383 lncRNA upstream 17899 2898215 ~ 2900223 (-) False LOC120568519
TU150390 lncRNA upstream 52053 2932369 ~ 3010514 (-) False G111638
TU150391 lncRNA upstream 52053 2932369 ~ 3010514 (-) False G111638
TU150394 lncRNA upstream 52053 2932369 ~ 3010514 (-) False G111638
XM_039815183.1 mRNA downstream 14413 2859574 ~ 2863734 (-) True LOC120568010
XM_039815190.1 mRNA downstream 20524 2854923 ~ 2857623 (-) True LOC120568013
XM_039815182.1 mRNA downstream 25759 2850025 ~ 2852388 (-) True LOC120568009
XM_039816547.1 mRNA downstream 149601 2703359 ~ 2728546 (-) True lamc2
XM_039816621.1 mRNA downstream 215382 2625838 ~ 2662765 (-) True smg7
XM_039816092.1 mRNA upstream 19206 2899522 ~ 3142454 (-) True LOC120568519
XM_039815187.1 mRNA upstream 277886 3158202 ~ 3181305 (-) False LOC120568011
XM_039815185.1 mRNA upstream 277886 3158202 ~ 3181305 (-) True LOC120568011
XM_039815188.1 mRNA upstream 277886 3158202 ~ 3177928 (-) False LOC120568011
XM_039815186.1 mRNA upstream 277886 3158202 ~ 3177928 (-) False LOC120568011
TU150296 other downstream 300133 2573304 ~ 2578014 (-) True G111573
TU150255 other downstream 489850 2341496 ~ 2388297 (-) True LOC120567903
unassigned_transcript_498 other downstream 1035153 1842454 ~ 1842994 (-) True LOC120567886
unassigned_transcript_497 other downstream 1045052 1832181 ~ 1833095 (-) True LOC120568499
unassigned_transcript_496 other downstream 1056597 1820750 ~ 1821550 (-) True LOC120567887
TU150424 other upstream 105016 2985332 ~ 3141870 (-) False LOC120568519
TU150430 other upstream 105016 2985332 ~ 2991846 (-) False LOC120568519
XR_005640646.1 other upstream 323971 3204287 ~ 3229147 (-) False LOC120568005
TU150514 other upstream 434330 3314646 ~ 3369939 (-) True LOC120568520
TU150904 other upstream 1155226 4035542 ~ 4036963 (-) True G111942

Expression Profile

XM_039815181.1 Expression in all Baseline Samples

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XM_039815181.1 Expression in each Bioproject

Bar chart with 8 bars.
XM_039815181.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40.
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