RNA id: XM_039815188.1


Basic Information

Item Value
RNA id XM_039815188.1
length 4246
RNA type mRNA
GC content 0.42
exon number 6
gene id LOC120568011
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 3158202 ~ 3181305 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

acaaaataggatgttgtaatttctgttaggttTGTTTCTAACCTGTCTGATCGTCTGTTTCTCTACAGTGATGTCAACCTTGTTCCCAGATCTCAGATATTAACTAGGCTGAGCAATGGACACAGCCAGCAGGACGATGGAGGTGGCGGCGCTCGGCCGGCCTTTTGGCCTCGGGATGTTGTACGACTGCCGCACAGACTCACTCATCCAAGCTCCGTTTTCTCTTCCAGGACCTTTCAGGTCAGGATGCTGACGTCCACTTCAATCCATCTGACAGAAACGCTGCAAATGATGTCAACCTTGTTCCCAGATCTCAGATATTAACTAGTCCAGGCTGAGCAATGGACACAGTCAGCAGGACGATGGAGGTGGCGGCGCTCGGCCGGCCTTTTGGCCTCGGGATGTTGTACGACTGCCGCACAGACTCACTCATCCAAGgaaTGACATTGTGGGACTGTGATGACCTGAAAGATCATATTGGAGAAAGACCGCAGAACTATAATGATTTTGAGATAGTTGCATCTGAATCAATTGCAGATAAAACTTCAGCACTAAATGTTGAAGCATCACTTAAGGCAAGTTTTTTTAGTGGACTGGTAGAGGTTGGAGGATCGGCCAAATACCTGAATGACAGTAAGACTTCTAAAAATCAGGCCAGAGTAACTCTGAACTACAAAGCTACCACAAAGGTCAAGGAACTGTCGATGGATCATCTTGGAAGAGGCAATGTGAAGCATCCGTATGTCTTTGATAAAGGATTAGCAACACATGTAGTCACAGCTATTCTTTATGGGGCACAAGCCTTCTTTGTCTTTGACCGTGAGGTGTCCGAAAACGAAGATCATCAAGACATTCAGGGCAACTTGAAGGTGATGATCAATAAGATACCCAGCATTACAATAGAGGGTGAAGGTTCCCTGACAATGGTAGACAACGACAAAGAAAAGGTTGACAAATTCTCCTGCAGATTCTTTGGAGACTTTTCAATTCAGAAACCACCTACAACGTTTCAGGATGCTGTAGAAGTCTACCAAAGCCTGCCAAATCTGTTGGGAGCTAACGGAGAAAATGCAGTACCAATGAAGGTCTGGCTGTTGCCATTGACAATTTTAGATTCTTCTGCTGCTAAACTCATCCGTCAGATAAGTATAAGATTAGTTCAAGAATCACAGAATGTCCTGGAGGACTTCAGTGAGCTGGAAATGAGGTGCAATGATGCACTGAGGACCACCACTGCACAGCAGTTCCCACAGATTAGCAAAAAgattaaaagttttaaagaaCTGTCCTCTGAGTTCAAGCTGGGCTTCCAACAAACCTTGGCAAAGAAACTTCCGTCAatccgaggaggaggagaagaggaggatgggCTCGTAGAGATCCTGAAGAAGAGACATTCTTCTCCTTTCAACAGCAAAAACCTGAACGAGTGGATGGactgtaaaagaaagaaatcgaCACATTGATGTCTTTCACCAACATGATGAAAAACACCAGGATCGTCTCATCTCAAACAGACGTGTCCACACAAAGTTTCAGTGCAGACcatgctgtgtgttttgtcttcaCCTCATTGGGACGTGATGAACCGTTACCTCTCAGCTTTATCAAACTacttaaaacaaacaacagacgACCTTCAAGGTGCACATACCCACGATGTAGAGAAGGAACAATGGTACGCCTCAAGAGAAGTAGTAAAAGAAATGAGGCATAAAGCAAAGCTCTTCAGTGACTTTGCAGAGGCCAACAAGGAGAACAACAAGATTAAGTTCCTGACAGTGGGTTCAACAAATGACACACAGAAAGGTTCAAGCATCTGCCTTTATGAAGACGGCTTTTCTGTCAGTGAGAACTTTGAGCCGCCTTCAAAGCCTGAAACAGTGACAGTAAGTGATATAAACTACAACAGTGTAACTCTGAAGGTTTCTCCACCCAGATTTGGAGCAGAGGTCATCACCTCCTACTCTGTTGAGTACTGTGTCAGTGGAGAGGATGAATGGAAACAGAAGACAGCATCAAAAGCTGAAGAAGTCACAGTGAGCGATCTGAGTCCGAACACAGAGTATATGTTCAGATGCAGAGCAGTGACCTCAGTAGGTGTTGGGCCAGCCAATGAAGTCAGTGGTTCAACTAAAACGTTACCTTGTAGCTCTCCTGGAAAACCTCAAGTTGAACCAAACTCAAGAGAGATATCTGTTAGCTGGAAGAAACCTGCTGAGCTTGGACAAGGTGTCCACATTTTGAGCTACATCGTGGAGTACACCAAACAGACAAAGGGATGAAAGAGGAAGATTTCCAATGGAATGAAATGATGGTAGAAGCTGAAAAGGCAATAATATCAGAGCTTCAGTCAGAGACAGAATATGTTGTCAGGGTCAGATGTGATTGTGGTGAAGCTGGCAGAAGCAAAGAAAGCATCCCTGTTAATGTCTGCACAACAAAGTTTACACTAACAGAATCCCTGAAAAGCACAAGCGAAAAGATTAATTCTGATTCACCATCAGTTTATAAACTGACTCTGACAGAAGAAGATATGAACATCGATGGATGCCGAAGATTCAGTTTTGGCAGAGAAAGCACAAGGCAGAATCACACTATAATGCTTTTTGGGGTGACCGGATCAGGAAAGTCCACTCTGATCAATGCAATGATCAACTACATAGTTGGTGTAGAATGGAAGGACAGTTTCAGATTCAAATTAATTGATGAGGATCAGTCGAGATCACAAGCTAAAAGCAAGACCTCTGAAGTCACTGTGTACAAAATCAACCACCAGGATGGTTTTAAAATCAACTACTCACTGACCATTGTTGACACTCCAGGCTTTGAAGATACAGGAGGCATAGAAAGAGACGAGGAGATCATTGCACATCTGCACGCAATCTCTTCTCTGCTGAGTGTTTCAGTGAAATTGACGCTGTGTGTTTCGTAGCTCAGTCTGCTTTAGCACGACTCACATCATCACAGAAATGTTTGTTGGATTATCTGCTCTCAATCTTTGGCAAAGATGTGGCAGAAAAATCCGGGTTCTGGTGACATCTGCAGACAGCCAGCAACCACCAGTTCTAGAGGCAATCACTGCTTCAGGTGTCCCATGTCCTAAAACAAAAGACGGGCTTCCAGTTCACTTCAAATTCAATAATTCAGCGTTGTTTGCAGACAACACATCATCTGCAGCAGACAGCATGAGTgagtatgatgatgatgatggaggaTTTGATCAGATGTTTTGGAACATGGGGACAAAAGGCATGAAGAGGTTCTTtgttgctttgaatgtcatAGACACCAAAAGCTTGACAATGACGAAAAACGTCctcagagaaagagagcagtTTGAGAAGTCATATGAAGATTTGCACAAGCAGGTTAAAACTGGGCTAGCCAAGCTTGAGGAGATAAGAGGGACAACTGAATATTTTCCTACGATGTCTGAGGTGAACACACTGATAGAGAGATCTACTGAGTGTTTCAACAAACTTAAAGAGAAAACACTGAAGTCAGATCCTCTCTCTACTGACCAGTACATTGACATGCTTATTGAGGGAGAGAAATCtgaggccaagccaggctgggAGCAACGAGTTCAGTTCTTGACCATCATAGATAGACGTTATCACAGTTTTCTTGGAGCGATCGGTATAAGTCTTATTAATCTTTAACATCCAAGACAAAGAGGAGATCCATTCTGACACagataataaagaaaaacataaaagataGATAAAAGGGAAACACAGAATAACATGTGTGATGATAAATATTTAAGTGTGACCACATTTAGTTTTTGGACCATTAACTTTCTGTCACCATTACCACCAATGTATAAGTCTGCAGCCCTATCTCTGCAAACCTGAACATTTGTATTTACATTGTTAAATTCAGGTTTTTAAACCGTAATATCAgccttttgttacatttttaagtttctTTTATCTACTCTTCAATTTATTTTCTCTGAGATATGAAAAACATAATTAACGTGAATAATGTTAAAGACTTATTGTATTGATGTGTATTCATTAACATGTTATTGTCCTGTCCTCCTGAATCATAAAGAAacgttttttttgaaaatacattttaatcagCAATACAAATCTTAGTATAAGGAGGTTCACATAAAGGTTTaaatatatttcttttctttaaccCTGTTCATATTTTTACACTGGGTTAACAGCTTCCTgctcagtttaacatgtttatcCACTATTAGATTagatattaaagtgcccatatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150446 lncRNA downstream 12325 3070612 ~ 3145877 (-) True G111662
TU150494 lncRNA downstream 40168 3117616 ~ 3118034 (-) True G111690
TU150464 lncRNA downstream 57869 3096244 ~ 3100333 (-) False G111678
TU150463 lncRNA downstream 57869 3096596 ~ 3100333 (-) True G111678
TU150466 lncRNA downstream 59163 3098400 ~ 3099039 (-) True G111680
TU150504 lncRNA upstream 73526 3251454 ~ 3291846 (-) True G111700
TU150477 lncRNA upstream 76547 3254475 ~ 3304338 (-) False G111683
TU150485 lncRNA upstream 81129 3259057 ~ 3304338 (-) False G111683
TU150484 lncRNA upstream 83039 3260967 ~ 3304338 (-) False G111683
TU150475 lncRNA upstream 83132 3261060 ~ 3304338 (-) False G111683
XM_039816092.1 mRNA downstream 15748 2899522 ~ 3142454 (-) True LOC120568519
XM_039815180.1 mRNA downstream 268463 2867255 ~ 2889739 (-) True LOC120568007
XM_039815181.1 mRNA downstream 277886 2878147 ~ 2880316 (-) True LOC120568008
XM_039815183.1 mRNA downstream 294468 2859574 ~ 2863734 (-) True LOC120568010
XM_039815190.1 mRNA downstream 300579 2854923 ~ 2857623 (-) True LOC120568013
XM_039815172.1 mRNA upstream 5654 3183582 ~ 3200853 (-) True LOC120568004
XM_039815175.1 mRNA upstream 26359 3204287 ~ 3229147 (-) False LOC120568005
XM_039815173.1 mRNA upstream 34620 3212548 ~ 3229147 (-) False LOC120568005
XM_039815174.1 mRNA upstream 34620 3212548 ~ 3229147 (-) True LOC120568005
XM_039815178.1 mRNA upstream 56440 3234368 ~ 3254369 (-) True LOC120568006
TU150424 other downstream 16332 2985332 ~ 3141870 (-) False LOC120568519
TU150430 other downstream 166356 2985332 ~ 2991846 (-) False LOC120568519
TU150296 other downstream 580188 2573304 ~ 2578014 (-) True G111573
TU150255 other downstream 769905 2341496 ~ 2388297 (-) True LOC120567903
unassigned_transcript_498 other downstream 1315208 1842454 ~ 1842994 (-) True LOC120567886
XR_005640646.1 other upstream 26359 3204287 ~ 3229147 (-) False LOC120568005
TU150514 other upstream 136718 3314646 ~ 3369939 (-) True LOC120568520
TU150904 other upstream 857614 4035542 ~ 4036963 (-) True G111942
TU151047 other upstream 1060174 4238102 ~ 4238670 (-) True G112043
TU151048 other upstream 1060174 4238102 ~ 4238670 (-) False G112043

Expression Profile