RNA id: XM_039815215.1


Basic Information

Item Value
RNA id XM_039815215.1
length 2166
RNA type mRNA
GC content 0.48
exon number 17
gene id rgs11
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 13985299 ~ 13993598 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGAAAAGGAAACAGTGATGCACTCTCTGTGGCGCGCTCCCGGCAGTTCAGCACTTCGGTCTTGCACTTTACCGTCCCGTCGAGTGATCCCAAGCAGCCCGCAAGATGACTATCAATACCCTGGCTAAAGGAGGCTGGCACCGGGAGCAAATGTCATGCTTTCGAAAGATGGAGAAAGTGATTGTGGCCATGCAGGACCCTGACATGGGCATGAAGATGAGAAACCAGAGACTTCTCATCACTGTCATTCCACACGCCATGACaggcCATGACATAATTGCCTGGTTGATCCATTCATATAGTATCTGTGAGGAGGAGGCACTGCACCTTAGTGGCTTGCTGGTGCGATATGGGTATATTTACCCTCTCAAGGAGCCGAGATCTCTTGTGTTACGGCCTGATGAGTCGCCCTACCGCTTCCAGACTCCTTACTTCTGGACGAGTACCCGGTGGCCTGCCTCAGAGCTGGATTATGCAATATATTTGGCTAAAAAGAACATAAGAAAACAAGGAGAACTGATGGAATATGAAAAGACGAGGTACAGTCTGTTACACAAGAGGATCAACCACACCTGGGACTTTGTGGTGATGCAAGCCAGAGAGCAACTCAGAGCATCCAAACAGAGGCGAAAGGCTGACCGCATTGTTCTCGAATGTCAGGAGCAGGCCTACTGGCTCATCAACAGGCCCCCGCCTGGGGCGCATAGTGTGTTGGACATGGGTCTGGAGAGACCAAATACCAGCGCAGGAGTTACACTGAACAGTGAGCACTACAAAAGTGAGATTGAAACCTCTAGAAGGGCTCTTGGAAGAAACCGTGTAAAGTCATCCATCTGCCTAGAAAGttTTGTGAAATACAGCGAGCAGTATCAGAACCACGACCCCATTATGCAAGGGTCCCTTCCCAGTAACCCCTGGATCTCTGATGACACCGCATATTGGACAATGAATTCAGAAatGGTGCCTATACCAACGCGTCTTCGAGTGGAACGTTGGAGCTTCAGCTTCATGGAGCTTCTTAACGACGGCATGGGGAGGCGGGAGTTCATGACTTACCTGGAGAAAGAGTTCAGTGCGGAGAACCTGTGTTTCTGGCAGGCCTGTGAGGATATTAAGCATGGAGAAAGCTCCAGGATCATAGAGAAAGTGGAAATGATCTACAAGAACTTCCTGGCTCCTGGAGCTGCCCGTTGGGTCAACATCGACAGTAAGACAATGGATAAAACTCTAGAGGGGATCAGAAACCCACATCGTTTTGTCATGGACGACGCACAAATGCACATCTACTTTCTCATGAAGAAGGATTCTTACCCAAGATATCTTAAGTCTGACCTATACAAGAACATGCTGGCCAAAGCTATTGTCCCCCAGGAGACAAAGAAAAGTGTGTTCCCCTTCGTGAGACGCCAACGGCACTCTAACCCCTCCCCTGCTCAGGCTGTCGCTCAGGCGACAGAGGAAGACGGGCATGCCAAGGGGGCCGGGCAAGCAGGTACCAACTCTGCAGCCGGCTCCAATGTCTGATGCCAGGCCAAAAATAATTTATCTTTTGGCCCCCTAAGCAACCACCCAAGGAGTTCtcctctgttttttcttttaagtcAAACTGTCTGTGTGAAAGCCAAAGCTTTTCTTTCACCGCGGCAACATTACCAGAGCTAGGATTTCAACATTAGAGCTTCCTCTCAGAGCACAGGTGTTAATGCGTACCACAGCAGCATCACATCTTATATCCAGAGCACATTGTGTACAGCAAAATAAAACGAGCTTTTAGTGCCACTGTTACAGCCTTCACTGCTGCATAGCCATCCTGCAGCCACATCCCATCTCAGTCCAAAAGTCAGTCCTGTTGTTCCTGATATGGCCAAGTCTTCCTTTCTCCCTCAATAACCTTTACATCTAATCTACTCTGTCTTTCATTAGCAGGTTTAGGCAAAAATATTGTTCATAGAGCAATAGAGatgcaaaatatatatttggtcAAATCTTTGCCTCAGCATGTGTGTGATTATCGTAcaatttgcttgttttgttcattCCATGCCAGAGCTTCACATTGTCATGGTTGTTGCTGTTAATTTTGCTCGAGCATGTTTTCATCCCAATAAAAAGTCACAACAGCACACAGTGTTGTGTTTTGCTCTCAGCTCTGCATGCTGTGGTAAA

Function

GO:

id name namespace
GO:0038032 termination of G protein-coupled receptor signaling pathway biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0004871 obsolete signal transducer activity molecular_function

KEGG:

id description
K16449 RGS; regulator of G-protein signaling

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154234 lncRNA upstream 14018 13971065 ~ 13971281 (+) True G114350
XR_005640643.1 lncRNA upstream 144354 13743275 ~ 13840945 (+) True LOC120567951
TU154180 lncRNA upstream 252336 13732682 ~ 13732963 (+) True G114301
TU154143 lncRNA upstream 325918 13659042 ~ 13659381 (+) True G114271
TU153873 lncRNA upstream 512048 13473014 ~ 13473251 (+) True G114095
TU154260 lncRNA downstream 45084 14038682 ~ 14040236 (+) True G114371
TU154265 lncRNA downstream 62095 14055693 ~ 14056452 (+) True G114376
TU154297 lncRNA downstream 180394 14173992 ~ 14174585 (+) True G114398
TU154307 lncRNA downstream 198365 14191963 ~ 14234212 (+) False G114406
TU154308 lncRNA downstream 198365 14191963 ~ 14214958 (+) True G114406
XM_039814930.1 mRNA upstream 284416 13688421 ~ 13700883 (+) True LOC120567849
XM_039814921.1 mRNA upstream 335503 13645229 ~ 13649796 (+) True LOC120567846
XM_039815758.1 mRNA upstream 345135 13630258 ~ 13640164 (+) True yme1l1b
XM_039815759.1 mRNA upstream 345135 13630258 ~ 13640164 (+) False yme1l1b
XM_039815760.1 mRNA upstream 355375 13620560 ~ 13629924 (+) True LOC120568344
XM_039815214.1 mRNA downstream 55900 14049498 ~ 14055522 (+) True c8a
XM_039814879.1 mRNA downstream 231403 14225001 ~ 14227666 (+) True LOC120567821
XM_039815164.1 mRNA downstream 241529 14235127 ~ 14238123 (+) True LOC120567998
XM_039815167.1 mRNA downstream 263961 14257559 ~ 14259688 (+) True LOC120568001
XM_039815626.1 mRNA downstream 293558 14287156 ~ 14295800 (+) True LOC120568245
unassigned_transcript_558 other upstream 767089 13218139 ~ 13218210 (+) True trnae-cuc_17
TU153770 other upstream 859836 13123055 ~ 13125463 (+) False ndufb3
TU153768 other upstream 867943 13114649 ~ 13117356 (+) False rpl37a
TU153727 other upstream 1009662 12929215 ~ 12975637 (+) True G113979
TU154336 other downstream 293552 14287150 ~ 14295268 (+) False LOC120568245
TU154337 other downstream 294757 14288355 ~ 14290960 (+) False LOC120568245
TU154338 other downstream 295939 14289537 ~ 14295993 (+) False LOC120568245
TU154339 other downstream 299162 14292760 ~ 14295268 (+) False LOC120568245
TU154847 other downstream 1158198 15151796 ~ 15157199 (+) True G114789

Expression Profile