RNA id: XM_039815217.1


Basic Information

Item Value
RNA id XM_039815217.1
length 3142
RNA type mRNA
GC content 0.42
exon number 6
gene id LOC120568033
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 14023028 ~ 14038301 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAAGAACAGGAGTAATATAGTAAGGATGGTTAGAAGAAAGAGTGAGAGCTGTGATTGTTAGAAGACAACCAGCTAATGGTTACATTTTGAAGGAGCGTATTTTCTGAATAGCAGACTAACAGTTTAGACTTGCATGACGACTCCTTAGGATCCAAGTAGAATCGCTAGGCAATTGTAGAGAGTAAAAAATAAAGGCACTGCGACAGCTTGTAACAAGATTTagattccctttttattttttttttccctttatttattcataacaCGTTTTAAATGCAACGCTGTTTGATATATGAGAAAACGATGGCAGCCGAGACGAGGAACGGCGGGAGTTCACTGAACAACAATAACTGCAAAGACCACAGCAGGAGAAAGTTACTGGTCGGAGTGGACCTCTTCTGCTTATTTTTAGTGTTGCTTGTTGCCGTGTTTTTGCACAAATCTCCCTTCCCGCCTTACCAGAGAGGATTCTTCTGCAATGACAACAGCATCAGGCTGACCTATAAAGGCAGCACGGTATCCACCACCGTGCTCTCAGCCGTGGGCGTCACTGTGCCCGTGGTCTCAATCATCGTCGGGGAGAGCTACAGGATCTACTTTCTAAACGAGGGATCCAAGTCTTTTGTAGGGAACCCCTACATATCGGCTCTCTACAAGCAGGTGGGCGTGTTCATCTTCGGCTGCGCCATCAGCCAGTCTTTCACTGACATTGCCAAAGTGTCAGTGGGCCGAATGCGCCCTCACTTCCTCGATGTGTGCAAACTTGACTTCTCCACTATCAACTGCTCCCTGGGCTACATCACTGTCTACCAGTGTCAGGGGCCAGAGAGCAAAGTTCAGGAGGCCAGGAAGTCTTTTTTCTCTGGACATGCATCATTCTCCATGTACACCATGCTTTACCTGGTGttttacctGCAGTCTCGTTTCAATTGGCATGGAGCTCGCCTGCTGCGCCCTCTGACCCAGTTCACCCTCATCATGATGTCTTTCTACACCGGCCTGTCCCGTGTCTCTGATCACAAGCACCACCCAACTGATGTCCTGGCAGGTTTTGTGCAGGGAGCCCTGGTGGCCTACTGCATAGTATTCTTTGTGTCTGATTTGTTCAAACCCAAAGGTAGACGCTCTACCCTTTCACCAACCCCAGTGAAGAAAGATCTAGTTCCTCCAGCGGACAACAGAGAGCGGAGTAACCATCTCATAATGGCATAGAGAAGGCTTCAATCTGACTGTACATAACCCTGACcggtgacttttttttttaagtcactgCTACAGCCACTGGTCAATACTGGATACAAATAAACTCCCAACAATCTGGATAATGGAGACAAACTATGGAATCTTGAGCGTCTCATAGGATGAGAGAAAGAGGTCTATGGAAAACTGTCAACCAAGTTTTGCTTTCTCAATGGAAATGTTCATCTTTTTCCTCCAGTCTCACCAGCCATTTTAATgtggaaaagagagaggaatggGGATATTTGTACCTCTTCTGTTATGAAGATTATTTGAGATTCTCCTCTGTCAAGGCCTTTCCATGGACACAAGTCTGAAATGAAACAAAACTGAGAAATGGCAGCTGTAATCAAAGCTGTGTGTGGCTTTTGTGCCTTCTCCCCTCAGCTGCATTCAGCATGGGAGCTACTATTATATTCCtgccactcactcactcactcactgtgTGACTAATACAAACAAatcatgacaaaaaaacaaattccttgaTTTCATGAAggatgttgtttttgtttggttttattACAGACATAAGCATTGTATGTGTGATTTATAGCACTATTTTAGCGAAACTAAGTCCTGTGTGTATCCACTTGAATTACCTAAAGTGAAGCTTTTGGAAAGCTTTGTAAGACTATAATGCCGTGTTCCTTAGAAGGTGCACATAAGTTACACTAGGTGGAAAGTACAGTGAGAACGTATTTGTTGGATGTGGGCCTCTTTCTGCTGGCTAGGACGAGCCCCCACTGAGCCATTTAATgaaatgactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcctttctGTGAGCGTACCAATGTGTCTTAATGTCATGTCTATATATTTCAGTGTTTATAGCCTACAAGTGTGCCTCTCTTCAGCCAGAGAAGTGGCACCTGCTCCAACAGACACGTGTAACTCGAGACGGGAACACTGTGGGGGGGGAAAGCATCTAATGTTACCGTTACTAATCGTAGTGATGATTCACATCACTGAGAAATCCTGTGATACACTGTATCCTACACaggcatacagtatatacatatattcaaAATAAAGACAGGGACGTCTAGAACATTGGTTACTTAAAGTAGCCTTTCAGTATCAAAGCACAATTAAGcaatacagtttaaaaaaaattatatttatggCACATTGTAACTGCGTATTATCTCAGTCTTGTAATACAATAGGGCAGGCAATGAGGCTCTGCATTATTAAAGACGAAAATCATTACATTGAATTTTAAAAGTAATAATGATGCTAATATGTTTGCTTGACATTGATGTTATTAACTTTTTAGCAAAAAGAGTAATGACACTTAAAACCACTGACTGAAAGCATCTTCCTCAGCTTTAAGTTACTGAGACAAACTTTGATCTGATGCTTATAAGAAACTATAGTTCTTTCTTCATACATGGCTTGAAAATCTATATACAGCATCAGAAGATTCTGCATGCTACCATACATTGTACAATAGTGTATCAtttgtatatatacattatatctTTTGAAGAAACGCCCACTATGACTTGTGTGTCGAGACCTGTGTAAATGTAAAACATGCTGCTTTAAAGAGGCAAAGCTTGGCAGATGGCATCAAGTAACGTTGACAACTTGTGAAAATTAAGTTTTATGAAAATCAAAGCTCTCAAGGCAGACGGCTTCAGTccatgtttgtttaaaaaaaaatgcctttcAATATTTTTGTAATGTGAAATTTTGTACAATGAAACTGTAAGATGTATCAAAGATAAATTgtctttaataaaacaaaaggtGAAGAGCAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154347 lncRNA downstream 70875 13949871 ~ 13952153 (-) False tfr1a
TU154346 lncRNA downstream 70875 13949967 ~ 13952153 (-) False tfr1a
XR_005640644.1 lncRNA downstream 74913 13942055 ~ 13948115 (-) True LOC120567953
TU154129 lncRNA downstream 394361 13625776 ~ 13628667 (-) True G114257
TU154127 lncRNA downstream 397549 13622903 ~ 13625479 (-) True G114256
TU154384 lncRNA upstream 11193 14049494 ~ 14055523 (-) True G114456
XR_005640651.1 lncRNA upstream 86402 14124703 ~ 14171474 (-) True LOC120568036
XR_005640652.1 lncRNA upstream 90018 14128319 ~ 14171474 (-) False LOC120568036
TU154466 lncRNA upstream 281042 14319343 ~ 14320763 (-) True G114518
TU154488 lncRNA upstream 380550 14418851 ~ 14458925 (-) True G114530
XM_039815219.1 mRNA downstream 11786 14007742 ~ 14011242 (-) False LOC120568034
XM_039815218.1 mRNA downstream 11786 14007742 ~ 14011242 (-) True LOC120568034
XM_039815213.1 mRNA downstream 16820 13996391 ~ 14006208 (-) True pgap6
XM_039815202.1 mRNA downstream 38439 13978250 ~ 13984589 (-) False c11h7orf26
XM_039815203.1 mRNA downstream 38588 13978250 ~ 13984440 (-) True c11h7orf26
XM_039815212.1 mRNA upstream 401 14038702 ~ 14049140 (-) False si:ch211-188c16.1
XM_039815208.1 mRNA upstream 401 14038702 ~ 14049140 (-) False si:ch211-188c16.1
XM_039815209.1 mRNA upstream 401 14038702 ~ 14049139 (-) False si:ch211-188c16.1
XM_039815206.1 mRNA upstream 401 14038702 ~ 14049139 (-) False si:ch211-188c16.1
XM_039815205.1 mRNA upstream 401 14038702 ~ 14049138 (-) False si:ch211-188c16.1
TU153973 other downstream 934465 13084561 ~ 13088563 (-) True G114152
XR_005640810.1 other downstream 1254403 12760915 ~ 12768625 (-) False LOC120568934
TU153584 other downstream 1420119 12601180 ~ 12602909 (-) False nedd8l
TU153382 other downstream 1804761 12218062 ~ 12218267 (-) True G113805
unassigned_transcript_557 other downstream 3134076 10887089 ~ 10888952 (-) True LOC120567758
TU154602 other upstream 575312 14613613 ~ 14615772 (-) False LOC120568687
TU154687 other upstream 757617 14795918 ~ 14797044 (-) True G114680
XR_005640598.1 other upstream 1251885 15290186 ~ 15304610 (-) False mfsd8l2
XR_005640597.1 other upstream 1251885 15290186 ~ 15304610 (-) False mfsd8l2
XR_005640842.1 other upstream 1372861 15411162 ~ 15411347 (-) True LOC120569139

Expression Profile