RNA id: XM_039815230.1


Basic Information

Item Value
RNA id XM_039815230.1
length 9154
RNA type mRNA
GC content 0.55
exon number 40
gene id LOC120568044
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 31714287 ~ 31799338 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGACACACACATCCTGCATCACAGCCAGTCTGTGTAGCCTGTAGCTTGCTGTGTAACCGGGGCAGTCACTCTGCTGTGGCTGTGTgcttgtctgtatgtgtgtgtgtgtgtgtgtgtgtgtgtagccgtGTCACCATCTTTATCCCTGCCTGTCTGCTCGCCAGTAGCAGCTCTCGCCTTCACCGCTGCCACTCCGGCTGTCCACCACCGCTGTGACCGGAGGAGAGTCTAGCAACAGAGCATCCTTCTGTTCTTCTCCCTAAACATGTTTCGAAACCCATGGATCTCTAGTTACCATGTGAACCATGAGCAGCCGTGTGGCCAAGaatTTGGATCTAAAGCTCGCAAGCTTTGCAGCTCAGCCTCATTGCCAACAGAAGCCTTAAGTTTTCAGAGTGACTTCTCCCTGGGTGACAATACCACCTTGGTCAAGAGTGTTTCAGATACAGATGCCAAACTTCTGTCTGTCCTTCCTAAGGTTTCAGAGTTGAAGAAATACTTTGAGGGACCTGTCACAAAGGATTCAGGAATGAACAGGAAGGAGAGGATAGCTCGCCGTCTGGAGGGGATTGAAAGTGATGCTCCACCTGCGCTGGTGCCCGGCGGTTTGGTAGCCAACAGAATGCTGGAGGAGGATGCTCCGCGGTACACCCGCGCCTCAGATCCCTTGAGGCGCTACAGTCGAGAGGAGCTGGAGGCCCCCCAGAAGCAGCTGTCTTCTCTAGACAGATCGGCCCAGGTCAAAGGTGGTGTTGGCAGCGGCCGCACAGAGCCCATGGTGGTGTACGTTGACCCAGTAACACTATCAACCTCTTCTACGCCCACATCTGGCCCCACAGACCCCAGCCTCAGCTCTAAGGCTGAGCGCATCGCCCGCTACAAAGCCGAGCGCCGCCGCCAGCTGTCAGAGCGTTACGGCATCCTCCTGGATCAGGAGGCGGACATTGATTACACACCGCGCTACCGCTCCCGGCGAGACACAGACACCTCTGACCGACAGACGGCCGCCAGacgagaaagagacagacaggaagtagaGGCTCACGGCCGGGAGCCCAGGGTGCCATATCGCTCGGGAGTGGGCCGGGTTTACATGAGGACTCACCCAGAGCCCGCCCCTGTTTCCACCTCCAGCCCCGCCCAGTCAAAccaagcccctccccccacacaaGAGAGGCAAAGAAGATTTTCAGAGCGGGAAAGAGCAATGAACATGGAGAACTACCGGCGCGGCGGGGCTCAAGAGCGCTCCATCCCTTCTAGAAGCAGAACCCAGGAGCATCATCCAGCCCAGCCCCAACAGCAGCAGGATGCTGTCCACCAGGATCCAAGCCCCGCTTCCACCAGGGATTACAGCATTGCAGCGGTGCCCAGCTCCCCTCGCACCGCCCGTCGGTCCTCCCTGCCCTCCACTCGCTACGGCATCTCACCAGGggatttatttatagagcagcAGGCCCAGAGCATCCTCAACAGGCATGGAATTCGAGTAAAGGAACGATTGTCCAGGGATGAAACCGTCCAGAAGCCCCCTGACTGGAGTCCAGACAGGCAGCAGGGTAACAGACACCGTACTCAGGGGCACACTGCTCAGTATACGCCACAACGCTCAGAATCCTCCCAGCAAAGGACTGTTCCCCAGCCTCAGCCCAGCCCAGGCTACCATCCTGCTCAGGGCAAAACAGCCTACCCTGTCTCAGAGTACCATCACTCTGGCCCTGCTGTTGACTCTCAGCCCTATTTGGCCATCCCTGCCCCAGTGGCTACTGCCAAACTTCCTGGACCTCCTGAGGTACAACCACGAAGAAGAGTGAGTGTCGACCAGATCCATGTCTCCCACAAGGAGGCAAGATTGGAGGCCAGGCAGGCCCTGAAGGAAGAGGCCCACACAGAGGGCCTGCTCAAGAGCAGGAAAGCCGTGTTGCCCTCAGAGATCCGCAGAAGGGAAAGGAGTGTGGATGATACTCACAGGAGCCGGCATGAAGACGTGGACTTGCAGAACTACAGCCCAGAATGGAGGAGGGTGAGTCGAAGCGAGGAAGACTGGGATCCGGAAAGACctagggagagggggagggagagaaatgtCGAGAGGATTttagaaagagggagagagcatCTCTCAAGCCACGACAGCCAAGAGGAGAGAGCGTTTAGATCGATGCAGCTTTCCCACATCTCTGTACACCAGCAGCCCAGGCAGCATCAATCCTCAGACCCTGTGTGCCATCAAGAGCCCCAAATTCAGCAGCAAGAGCCACCAACGCAACAACAGTATGAACCCATAAAGAGACAACATGGGGctcagcaacagcaacagcaagttCCTCAAATGCAGCATCAGTACGACCACTCGAGGCAGCCACAAGAGCCTGAAAGACAACAGCAGCCTCAAAGACAGCAGGGGAATGAGCTCCAAAGACAAGATCCTCCAAATCAGCAGCAAGACTCCCGAAGATATCAACAGGAACCCCAACTACACAAAGTCTTTGAGCCTcagatgcagcagcagcagccagatCCATCAGGGAACCAGAGGTCTGACTCAGCCATCTATCTCCAGAAAGGTTCTTCTCTGCCTCAGGCCAAACACAGAAGCATGGAGACGAGCGGAGGGCCCAAACCCAAGATACGAACCCGCTCTATGTCAGATATAGGCATAAGCCAGCATTCTGCCATGTATCGTATGGAGAGGGGAGCGCCCACCAGAGAAACATCGAGGGCCGTCCCTCCATCAGGGATGGCTAACGGGGAGATGGGCTCCCTGGACACCAGGGTGTCAGTAGCACAGCTGCGACACTCTTATCTGGAGAATGCCAACCGGAAACCTGAGTTTGAAACTACAAAAGTAGATCTGACAGCAATGGAGGTAGATCCGGCTAGCAGCAGTGACCGGGACAGGGGTGCTCGGAGGCCTCGGCGCTACATCACTCCAGGAGACAGTCGCATGTCGGAGAGGTTTAGGACCCAGCCCATCACCTCTGCAGAGCGACTGGAGTCAGATAGGACTCGTCTAAGCCCATCACAGCTACAGGATCCCGAAGGTGAAGAAAAACTGGATGACAGAGCCAAGATGAGTGTGGCTGCCAAGAGGTCTCTTTTCAGGGAGCTAGAAAGGACATGTGATGGAAGTGTACCCAAACCGCGCTCTCGAAACGCTGCCGTAGAAAGGCGTCTGAGAAGAGTTCAGgatcgctcacacacacaacccgTCACCAACAGGGAGGTGGTCAATGCTTCGAGTGACCCTGCCACATCGTCACAACCTCTGGGAATCCACACTAATGCAGCTCGCGTCCCAAGCCCTACTGTAGTCAGCACCAGTGTGACCAGCATTAGCATCCAGGCCTCCCCCCAGCCAGGCTCAGCAGTCCTGGGTCAGGATCAGGAGACCCAGGAGCAGCAGAAAGCAGCTACAGCTCCCAGTGCAGGGGCAGAGGGAGATGGCCAGGAGCCTTTCTCTAATGAGCCTGACCTGTCCGCCCTCACCCTGGCTGAGAAGATGGCCCTCTTCAACCGCCTCGCTCAGTCTACAGGCCAGCCCGCCGAGGGGGCCCGAGGAGACACCCGCCAGCGCAGGGCCAACGCCCGATTCCAGACTCAACCCATCACCCAGGGAGAGGTGCAGCAGGAAGCTGAGCTGCCGCTAACCTCTGCGCTGTGTAACGGCGACTTACAGGCCAATCAGGGACAACATCTGAAAAACGGAGGTGAGATCAAACTGGAGCCCCTGTCAGCCTGTCTGATCCGCTCCGTGGCAACCGTCACCTCCCAAGCCTCCGTCGCCACAGTAACAGTCCCGCCAGGCAGCGGCAGTGGCGGTGGCGGCGACAATGATTCTCACCATCCAGGGAAGTCCACCGCAGTCCCCTACATCCCTGCCCAACAACAGGCTTCCAGCAGCACAAGCAGCCACCAGGAGAGGGCGTTGAGGTATTTCTCTATGACCCAGAGCGGTGAGCCAGGCCACCCCGAGCCTGAGCTTGACTCCTCCCCTCTCATCCCTGTGAGCCGGCCAGGAGCGGGGGCTCCTCTAGCTCCCACGTCCTCCGCCGGTCTCAGGCAGCAGGGGGAGGCAGTGGAGGAGGGCTTTAGAGAGCGtcacgaggaggaggaggttagGGGGAGACAGCAGGGAGGAGCCAGAGAAGAGATCCGAGACGGCAGCATTGAGGGAAAGCTGCACTCCCCCGACAGGGACCGGGAcggcaggcagcagcagcatcccCAGCCTCATCCCTCTGCCGAACCCTCTCCAAGGAGAGGCCAATCAGAGCCTCTGCCCAGCCGGCGAGCCGCAGACGGACACTCCCAGGAGAGCAGGGAGAGAGCAgaggggggaggaagaggaagacggGGGTACCTGAGAGAGGCAGCTCACGTCTCCTCCAcacaggagcaggagaggagcaGCAACTGGAGCCAGCCAGGCATCTCAGACTTGCCGGATCATCCTGTACCACTGAGGCCCCTGGTAGCTAAAGTGTCATCCAGGACAGTGTCTCACGTTTCAAGCAGACAGCAGCAAATCAACACCCAGCCTCCTCAAACTCTTCCTAAACCCTTCACACAGCAGCCTCCTCCAACACCCCCCAAACCTCCGGCCAACATCCAACCCCAGCCACCCTCCCAGCCCCCACCAACATACCCCAAACCTTTCATTCAGTCCCCACAAACCCAGCCCCAACTTCAGGGATTTGTGCAGACTCTCCCTAAACCTTACCAGCAGACAGCCCCTCAGCCTCAACCCAAACCCCAGGTGCCTCCGCAGACACCACCCAAACCCCAGTCCTTCCCCCAGGCGCTGGTCAAGTCCCAGTCCTTGCCCCTGGACCACAGCGAGGACTTCAACAGGCACAGTGTCCATTCTGGAGATCTGCTGTCCCCCACAGACTCTGGAGACCCGCTGTCTGACGACATGTCCGCCAAGCAGATGTCCATCAAGGAGAGAGTGGCACTGCTGAAGAAGAGTGGTGAGGAGGACTGGAGGAACAGGATCAacaagaaacaggaagtggtCCAAGTGGCATCCACGGAGACGCAGGCTCAGCTATGGGAGTCAGAGCAGACCTGCGACAACAAGGAGGAAGGGGTGGTCATTCAAGACTACTcggctgtgtctgtgtctgaacAGCTGTGGGAACCTGTCTTCTCTTCCACCTTTTCTCCTACTATCTCCCTTGGCCAAAAGTGTCAGTATATTGACCATCATAGTCAGAAGGTGGGAGAGGAGATTGAGGCCCAGATATCCAttgaggagagaaaacagatgaTTTCTGTGCGTGAGGAGGCCTGGAAGACAAAGGGAAAAGGAGCAGCCAATGACTCCACCCAGTACACCGTGGCTGCACGTATGGTCAAGAAAGgCCTGGCAGCCTCTTCCTCAGTTATCAGCCCCATCCTGTCGCCGGTCTCCACCAAACTCAAGAGCAGCGTGCCTGCTGTCCACAAACCACCAGAGGAAATTGAGGCCAGACCAGAAATGGAATCGGATAAGAAACTAGACAAGTTGGAGAGCTTCTTGGGACGTCTGAACAGCAAAGTGGCAGGTCTGCAGGAAACTACCTTAACAGTTACCGAGAAGGCAGTGAAGGAAGTGATGAAGCTGGACGACGAAATCTTCTCTAAGTTCTACAGACACGTTGCTGAATTTCCACGCATGCCCACCAGGATCGAGATCAGTGAGGATTTTGACGCCATCTTTGGTTCTCAGGGTCCCAAGTTGACTTCGGCCATGGTGCAGCATAAGCGCTCGGTGCGTCCATCCAGGAACGTCCAGGCGTCAAGAAACCCTGTGAAGATGCTggcagccagagaggacatccGACACGAGTACACCGAGCAGAGGTTGAATGTGGCACAGCTGGAGAGCAAGAGGATCAAGGCTGCGAAGATGAATAAAAGCTCTGAGTATTCTGAGGCTGCTCTGGCAGGTCTGGCCAGTAAAGAAAACTTCAGCAGCGTGAGTCTGCGCAGCGTCAACATCTCGGAGCAGATGTCTAACAACAGCGCCGTGCCCTACAAGAACCTCATGCTGATGCAGGTCAAAGGTCGTCGTCACGTTCAGACCAGATTAGTGGAGCCGAGAGCATCATCACTGAACAGCGGCGACTGTTTCCTGTTGGTCACTCCAGAGCACTGCGTCGTTTGGATAGGAGAGTTCTCAAATGTCATCGAGAAGGCTAAGGCAATAGATCTGGCCACCTTCATCCAGACAAAGAAGGACATGGGCTGCAGGGCCAACCAGGTGAAGACCATCGAGGAGGGGGTCAACCCACAGGGTCTAGATACCCAGCAGTTCTGGACCATCCTCGGAGGACAGACTGCTTATCAACCTGCAGGTCCACCCGAGGAGGATGAGCAGTTTGAGAATGCCATTGTGGAAACCAACTGTATCTTCAGACTGCTGGATGACAAACTGGTTCCTGATGATGACGAGTGGGGGAAGGTCCCTCGCAGCTCTCTGCTGGCACCCAAGGAGGTGTTGGTGTTTGACTTTGGCAGTGAGGTGTATGTGTGGCACGGTAAGGAGGTGACCCTGGCCCAGAGGAAAGTGGCCTTCCAGCTCGCCAAACACCTTTGGAACGGGACGTTTGACTACACCTGCTGTGACATCAACCCTCTGGACCCTGGAGGCTGCAACACACTCATACCCAGGAAGGGCCAGGGCCGTCCTGATTGGGCGATATTCGGCAGGCTGACAGAGCACAACGAGACGATCTTGTTCAAAGAGAAGTTTGTAGACTGGACCGAAGCAAAGTCGCCAACACCAAAGGAAGGTGGCGAGCTCGTACCTGAGCAGAAGGAGGCCCCGCGGAAGGAATGCCGGCCCTACGACACTACCCTGATGCTGCCCGTCCTCCAGTCGTCTATTTCCACCATCTTGGACGGGGTGAATGTGGGCCGTGGCCACGGCCCGGTGGAGACCGAGGACCACATGAGGACTCAGGAGATCAGCACGGTGTCGGTGGACGTCTGGCACATCCTTGAGTTCGACTACAGCCGCCTACCGCGCCAGAGCATCGGCCAGTTCCACGAGGGAGACGCCTACGTGGTCAAGTGGAAGTACACGGTCAATACCTCGGTCGGTCGCAGGCAGAACCCTGAGGCGAGGAGCAGCGGGCCGGGGAAGGAGAAATGCTGCTACTTCTTCTGGCAAGGTCGACACTCCACTGTCAGCGAGAAGGGAACGTCAGCGCTGATGACGGTGGAGCTGGACGAGGAGAGAGGGGCGCAGGTTCAGGTGCAGCAGGGAAAGGAGCCTCCATGTTTCCTGCAGTGCTTCAACGGAGCGATGATCGTCCATGCTGgcaagagggaggaggaggaggagaacacTCAGAGTGAGTGGCGTCTGTACTGCGTGCGGGGCGAGGTTCCGCTGGAGGGCCACCTGCTGGAGGTGGCATGTCACTGCAGCAGCCTGCGCTCCAGAGCCTCCATGATCCTGCTCAACATCAACAAGGCCATCATCTACCTGTGGCACGGCTGCAAGACGCAGCTCCACACGCGTAGCGTGGGGAAGACGGCCACGCTCAAGATCAAAGAACAGTGTCCACTGGAGGCGGgtctccacagcagcagcaaggTGACCATCCATGAGTGTGATGAGGGAGCGGAGCCTCCAGGCTTCTGGGAGGCACTCGGGAGGAAAGACAGGAAGGCCTACGACTGTATGCTGCaagatccaggtaaattcaactTCACCCCACGGCTTTTCCAGCTGAGCAGCACATCTGGAGACTTTGCGGCAAATGAGTTCTTCCACCCGTCCAGAGCTCCAGACCTGGTCAGCTCCCTGCCCTTCCTGCAGGAAGACCTGTACAACGCACCGCAACCTGCGTTGTTCCTGGTGGATAACTTCCACGAGGTTTACCTGTGGCAGGGCTGGTGGCCTCAGGACAGCGAGAGCACTGGGTCGGCTCGCATCCGCTGGGATGCAGACAGGAAGTGTGCCATGGAGACGGTGCTGCAGTACTGCAAAGATAAGAACGAGAAGAAGCCTCAGAAGTCGTATCTGATTCACGCCGGCCTGGAGCCACTCACCTTCACCAACATGTTTCCCAGCTGGGAGCACCGAGAGGACGTGGCTGAGATAACCGAGAGGGAGGCGGAGGTGTGTAACCAGATTATCCTGGTGGAGGACGTGTTGGCCCGGCTCTGCCAGAACATCTTCCCTCTGGCTCAGCTGCAGGCCCGGCCGCTCCCAGAGGGAGTCGACCCGCTCCGCCTCGAGATCTACCTGTCTGAACAGGACTTTGAGAAGGCTTTGGAGATGAAGAGAGAGGAATATGAAGGTTTACCAGGGTGGAAGCAAGTGAACTTAAAGAAGGCCAAAGGACTGTTTTGAGGAAGTTTTTAAATGGAAGAGGGAAGGCGGATAAAAAGTGGACAGTTGAGATGGAGACACAGGAAATGTCACATACCTGTGAAACCTGTTTTGGTGTTAAGACACGAGGACATCGAGATAGAAAGTATCAGAATCGGAAGAAAACCTACATGAAGGATGAGATTGGAGATGCACTCCCCTTGCTTATAGTCATGCTTTACCTTTCAACTTTGTCATTAAATAACAAAATGGAATTCAAAACGGTTTAAGAGAAGGTAAAAACACCTTGCTTTGGTTCATACATGGTATTTGTGCGTATTTGGAGTTTCCTCCAAACATTAAAAGTCAACACTCGTGGACTTAACGGATGGAAATGTGCACACTAGAACGCTCGGTGTCAGAGTGCCATGCTATGGTTGTGTACGTATGTTGAATGATTGTATATAatctttgtgtgtaatgtttatttgtgtaaatgtgtgtgtatctatgtaaaAACAGATCCTGTCACGTCAGATGTTGTAAGGAAAGTCGTCGTTCTATTTGTTGTCTACAGTGTCTGGATGCTGTCAGGCCACGTAGGGAACTCGTGTCGCTCGGTTGTGTTAAACTGCTCAAGTGGCTCTGGACTTACTGAGATGTAAGAGTTGTAATTTTAAAGGTTTGACCTGTACGAGAAAGAGAAACAGCAGCTTGTTAAATCTGAATGTATAGTGCCTTGCTTTTTGTGTACAGTTTATATACAGAAATCCTAGTCTGCATTTTTAAAGACTTTCTTTGTGATATAAGACATAGTAAATTAAATCACAATAATGCTCAACTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640619.1 lncRNA downstream 50463 31660615 ~ 31663824 (-) True LOC120567841
TU160702 lncRNA downstream 99963 31614016 ~ 31614324 (-) True G119284
TU160691 lncRNA downstream 243128 31469613 ~ 31471159 (-) False zeb1a
TU160678 lncRNA downstream 257133 31456893 ~ 31457154 (-) False LOC120568745
TU160677 lncRNA downstream 258890 31455053 ~ 31455397 (-) True G119260
TU160792 lncRNA upstream 63251 31849438 ~ 31915814 (-) False G119347
TU160786 lncRNA upstream 126491 31912678 ~ 31915608 (-) True G119347
TU160790 lncRNA upstream 126491 31912678 ~ 31915608 (-) False G119347
TU160804 lncRNA upstream 130467 31916654 ~ 31917970 (-) True G119357
TU160805 lncRNA upstream 131852 31918039 ~ 31919127 (-) True G119358
XM_039816309.1 mRNA downstream 3496 31696803 ~ 31710791 (-) False LOC120568655
XM_039816308.1 mRNA downstream 3496 31696803 ~ 31710791 (-) True LOC120568655
XM_039816310.1 mRNA downstream 21741 31682200 ~ 31692546 (-) True LOC120568656
XM_039815925.1 mRNA downstream 139094 31469595 ~ 31575193 (-) False zeb1a
XM_039816983.1 mRNA upstream 16317 31802504 ~ 31821424 (-) False LOC120569109
XM_039816984.1 mRNA upstream 16317 31802504 ~ 31815104 (-) True LOC120569109
XM_039816634.1 mRNA upstream 52195 31838382 ~ 31860078 (-) True kcnj9
XM_039816637.1 mRNA upstream 79551 31865738 ~ 31866697 (-) True LOC120568891
XM_039816160.1 mRNA upstream 578532 32364719 ~ 32374518 (-) True LOC120568568
TU160692 other downstream 139097 31490252 ~ 31575190 (-) False zeb1a
TU160586 other downstream 539336 31126430 ~ 31174951 (-) True G119177
TU160575 other downstream 542677 31169922 ~ 31171610 (-) True G119169
TU160576 other downstream 542677 31170382 ~ 31171610 (-) False G119169
TU160545 other downstream 838207 30864246 ~ 30876080 (-) True LOC120568929
TU160835 other upstream 261290 32047477 ~ 32051439 (-) True G119379
TU160944 other upstream 430315 32216502 ~ 32226360 (-) False G119465
TU160945 other upstream 432320 32218507 ~ 32226360 (-) True G119465
TU161095 other upstream 976158 32762345 ~ 32765076 (-) False fcer1gl
TU161097 other upstream 976158 32762345 ~ 32765076 (-) False fcer1gl

Expression Profile