RNA id: XM_039815255.1


Basic Information

Item Value
RNA id XM_039815255.1
length 3386
RNA type mRNA
GC content 0.43
exon number 14
gene id LOC120568062
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 23468620 ~ 23491612 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGACACGGCTGGTGCGCCGGTCGCACTTGTTAATTTTGCATCACTTGCGAGAGAGACATTTCTCAACTGAAGCTGTGTGGAAATCCGAGCTTTTATACTCCATGCCTTTTCCATCAAATGTATGAGCTGACGCAGTAGACTGCTTCCTGTGGGCTTTGTGCTGCTTGaggaggattctttttttttgcctggATGCAAGCTTAGTCTATATTGGTGACTTGCTGCGGTTGTCATTTTCTGTTTGTATCTAGCACTGCTCTCTCCAAAGAAAAGTGGAATGCTCTACTTCATGGAGTAGCCAAGATAATTTTCTCTCCTGCAGAATAATCCAGAAGACTATTCTACATATTCTTTATCCTTCGAATGAAGTTGATCAGTTCAATTTCTCTCCTAAAAACAGACTAAACAGCTTCAAAATCGTTTTCTAGATCTGTGGACGTCAGCTGGATATCCCTTTCAACctctttttgtacttttttcatcAAATGGAGTGACTATTACTTGAGACAGTTTTGAGCCATCTCTGCACCCCTATCGTAATGCGGTTGGCCATTGTCAAATTTAGTTTTGAACCCAAAACCTACTGAGTTTCATGAAGAGGTTTGGCAGCCTGAGGAGGAACAAGAAACGGAAGGAGCCAGATGGGCTAGGAGGGAGGCATCAGTCCGAGTCGTCATGTCTTTCTGCCTCTGGACTCTCCACACCACCCACCACCCCAACTCAGGCGTCCAGCCAACCGTTATTTACCCAGGAGGCCCAGCCGAGCAGGCCCAGCCCCGAACGCCTGGAGGCGAGCTATCGATCCTGTTCAATCTCCACACCTCCAGACACAGGTCAACGCCTCAGCCTTCCCTCTGCTAAACCACCGATCCCTTCCTCGAGCCCTGTGACATCTTACTCTACCTCGCAACAAGTCTACGGTTTATTCGAAGGCATGCTGGAGAAACTTGAACTAGATGATGATGCTGCTGAACCTGAAAGTGATATTTACATGCGCTTCATGAAATCCCACAAGTGCTATGACATTGTCCCCACAAGCTCCAAGCTGGTGGTGTTCGACACAGCGCTCCAAGTTAAGAAAGCGTTCTTTGCCTTGGTAGCTAACGGTGTGCGAGCTGCTCCGCTATGGGACACAGAGAAGCAAAGCTTTGTGGGAATGCTGACAATCACAGATTTCATCATCATACTACACAGATACTATAAGTCACCGATGGTGCAAATATATGAATTAGAGGAGCATAAACTTGAGACATGGAGAGAGGTGTACCTACAAGCAACATTTAAGCCTCTGGTCAACATATCACCTGATGCAAGcctatTTGATGCCGTGTACACCCTCATCAAAAACAAAATTCACCGCCTGCCTGTCATCGACCCCGTCACAGGGAATGCACTTTATATTCTCACACACAAGAGGATCCTCAAGTTCCTCCAGCTTTTTATGTGTGAAATGCCAAAGCCAGCATTCATGAAGCAGACTCTCGGGGAGCTGGGCATTGGTTCGTACCAGGACATCGCTTTCATCCACCCGTACACGCCCATCATCAAAGCACTCAACATTTTTGTGGAGAGACGAGTGTCTGCCCTGCCTGTGGTAGATGAGTCGGGCAAAGTTGTGGATATTTACTCCAAGTTTGATGTGATTAACCTGGCTGCTGAGAAGACGTACAACAACCTGGACATTACAGTGACGCAGGCTCTGAAACATCGCTCCCAGTATTTCGAAGGAGTCATGAAGTGCCATAAGATGGAAACAATGGAGACCATTGTGGACAGAATAGTCAAAGCAGAAGTGCATCGGTTAGTGGTGGTGGACGAGCACTCCAGCATCGAGGGCATCGTCTCCCTGTCAGACATCCTCCAGGCCCTGGTGCTAAGCCCTGCAGATGCCTGTAAGGAGGAGAACCTGACTGAGTGAGAGGGAGGAAGCATCAGCTGGAGTGGAGACGTGATGGGAGTAAATAAGTTGAATGGTATGGAGCGTGAGGCTGAGCAGAGCCAGTCTGAAGGTCCCAGAGACTCCTGCAACTGATGCACTGTAGAGGCTTGGAAACCAAAGAGCTAGACAGATGAATGAAGTGGAGTTCCTGCACTGAGGATTGATTttctgagtgtttttttttgtttgtttatttgaacactgatcagacacacacacacacacacacacacacacacacacacacacacacacacacacacagtatactgtatttatacacacacacacgcatacacagagATGCATTATGTTCATCTGCTGGGGAAAGGTGGGAAAGTCGAGACTGGTTCTGATGAATTAGGGCTTCAGTGTTTTGCGTTGTGTAGTTACGATCATGCTGCTGTCATCTGTTGATTTTTAGTCTCATTTTGTAGTCAATACTGAATGTTATCACTTCTTGCTATGTGGTGTAGAAAGGTGGACATTGAGGGATGCAATTTATTGTTTGGTAGCAAAACTACACTTTACATACAATGTGGCCATTACAGTTTGCCAGTGCCAATATAGAGGGATTGATGCCCAATATGTATTTGTGCCTTTTTTGCTCTGCCGACATCTGTTAAAACTGTCAGTAATTGTGtcctttgactttttattgtcAAATGAGTGCAATTATTtggatttgttttaataaatggtTAAGATATCAATGTGTAATAGTTGGCAGATTCAGCCTTCTACTTCTCCATTCAAAAAAGATTTCCCTTTCATTTGGTTGCATATTCTGTGATTTTTAAACCATGTCAGAAGTGTCAAGAATTTCTGTTAAATATATCTTATTCTAAAATGAAAAtcctaaatcaaatcaaaatcatttTGGCACAAAAACATATAGTGGTCATAGGGAAATGCAACTGTACATCAATAAGGATTCTATCCGCCAAGAGCTATGAGTGAGCACTTCTTTTACATCTGTAGTCATTTAGTCATTGTGACTCAAGAATGCATTTTTGTAATGTTATTAAAAGACCGGAAAATGTCTTTTTAGGtgtttaaaaactttaaaaaaaaattactttcgGTTTTGATGCTTCAGATAATCTGATACTCACAAACATGCAACACAACTCTGTTATCTCAGCTGTAGCGCGACAGGACTCATCTCCATCTTTGACTGTAAATAGGATCAGTTTCGGGAAACGTGTCACATAAAGCTTTATTTTTATGAATGTGTCAACATGTTTAAAGAGACTGcagttttattgttatttttgtaaatatattgtGGCAATATGTCCAGTTCAAAGAGACTTTGTATCTGATcaacatgtactgtaaatgGGCAAGCATGAGAAACTACACTTCAGCAGTATGAATGtcctttgttttactttttctatttttctggcTGCACAAAAATAAATGGACACTGAATGTACTTTAA

Function

GO: NA

KEGG:

id description
K07200 PRKAG; 5'-AMP-activated protein kinase, regulatory gamma subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158045 lncRNA downstream 6324 23446358 ~ 23462296 (-) True G117265
TU157960 lncRNA downstream 119436 23345770 ~ 23349184 (-) True LOC120569135
TU157969 lncRNA downstream 126697 23341354 ~ 23341923 (-) True G117206
TU157968 lncRNA downstream 127305 23339536 ~ 23341315 (-) False G117205
TU158097 lncRNA upstream 300590 23786090 ~ 23786473 (-) True G117302
TU158109 lncRNA upstream 330391 23815891 ~ 23819966 (-) True G117311
TU158107 lncRNA upstream 330611 23816111 ~ 23819966 (-) False G117311
TU158135 lncRNA upstream 356746 23842246 ~ 23843595 (-) True G117324
XR_005640816.1 lncRNA upstream 358331 23843831 ~ 23849958 (-) True LOC120568991
XM_039816223.1 mRNA downstream 46843 23363029 ~ 23421777 (-) True LOC120568611
XM_039817030.1 mRNA downstream 107040 23345718 ~ 23361580 (-) False LOC120569135
XM_039817031.1 mRNA downstream 113859 23345718 ~ 23354761 (-) False LOC120569135
XM_039816776.1 mRNA downstream 150930 23313367 ~ 23317690 (-) True LOC120568995
XM_039815743.1 mRNA downstream 291498 23172058 ~ 23177122 (-) True psma8
XM_039815259.1 mRNA upstream 7463 23492963 ~ 23571363 (-) True kmt2cb
XM_039815094.1 mRNA upstream 197235 23682735 ~ 23724031 (-) False arhgap21b
XM_039815095.1 mRNA upstream 197235 23682735 ~ 23723501 (-) False arhgap21b
XM_039815093.1 mRNA upstream 197235 23682735 ~ 23723501 (-) True arhgap21b
XM_039815096.1 mRNA upstream 197235 23682735 ~ 23701057 (-) False arhgap21b
TU158039 other downstream 37628 23430366 ~ 23430992 (-) True G117259
TU157659 other downstream 1200061 22263123 ~ 22268559 (-) True G116969
TU157655 other downstream 1205122 22261998 ~ 22263498 (-) False G116969
TU157096 other downstream 2458051 21008049 ~ 21010569 (-) False higd1a
TU156767 other downstream 3672911 19793834 ~ 19795709 (-) False xcr1b.1
unassigned_transcript_560 other upstream 382452 23867952 ~ 23868025 (-) True trnai-aau_23
unassigned_transcript_562 other upstream 383655 23869155 ~ 23869226 (-) True trnap-agg_8
XR_005640840.1 other upstream 534862 24020362 ~ 24020438 (-) True LOC120569137
XR_005640841.1 other upstream 535939 24021439 ~ 24021501 (-) True LOC120569138
TU158445 other upstream 1013880 24499380 ~ 24536496 (-) True G117560

Expression Profile