RNA id: XM_039815265.1


Basic Information

Item Value
RNA id XM_039815265.1
length 2174
RNA type mRNA
GC content 0.47
exon number 1
gene id LOC120568072
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 6773520 ~ 6775693 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtttaacccATCCCTCTTCTTGCTACACAAactctgtggacatgttgcctTGTTCCCTCCCCCTCACTGAGCTGCATGTGTGACGATGGGTGTAACCACAGCAGATAGGGCAGGAGCTGATTGGTCCTATTCAGTGAGGATTAGCAAATCAACAGGAACAAAAGGACATAGTTCTGATTTAAGTCAGAGCACAGAGTAGCTTCTGTTGAGAGAACACCACACAGTCACTGCCACGAGGTGAAATGGCGCAGCAAGGAGTTAAGCTGGAACGAGAAAGCTTCTCTTGTTCaatctgtctggatctactgaaggatccggtgactattccctgtggacacagctactgcatgaactgtattaaacGCAACTGGGATGGGAGGAGAATCCACAGATGCCCTGAGTGCAGCCAGACTttcacaccgaggcctgtcctgatgaaaaacaccatgttatcagatttagtggagcaactgaagaagactggactccaagctgctcctgttgatcactgctatgctggagctgaagatgtggcctgtgatgtctgcactggGAGAAAACTGAAAGCATACAAGTTCTGTCTCATCTGCCTGGCCTCTTTCTGTGAGTTACACCTGCAGCCTCATTATGACTCCCCTGGGTTTaaaaaacacaagctggtggagaaGAATCTCCAGGAGAACATCTGCTCTCAtcatgatgaggtgatgaagatATTCTGTCGTACTGATCAGCAGTgtatctgttatctctgctctgtggatgaacataaaggccacgacacagtctcagctgcagcagaaaggactgagaggcagaaagagCTTGAGGGGAGTCAacaaaacatccagcagagaatccaggacagagagaaagatgtgaagctgtTTCAACAGGAGGTGGAGGCTATCAATCGCTCTgctgataaagcagtggaggacagcggGAAGATCTTCACTGAGTTGATCCGTCTCatggagaaaagaagctctgatgtggagcagcaggtcagattccaacaggaaactgaagagaggcgagtcaaagagcttcaggagaagctggagcaggagatcactgagctgaagaggaaagacgCTGAGATGAAGAAGCTCTCAGACACAGAGGATCACAcccagtttctacacaactactcctcactgtcaccactcagtGAATCTACATCCAGCATCGATATCCGTCCTCTGCGCTACTTTGAGGACATGACAGCGGCCGTGTCAGAAAtcagagataaactacaggagcttttgagaaagaaaagaacaaacctCTCACTGACAGGAAATACAGTGTTTGGTTTACTGTCAAATTCACAACCAGAacccaagaccagagctgacttcttaaaatattcacgtgaaatcacactggatccaaacacagcaaacaAAGGTTTGTTATTAACCGCAGGGAACAGAAAAGCAATAGTTTTGGAAGATGTACAGCCTCGTTCTTATCACGAAGACAGGTTCAGTGACTGGATTCAGGTCCTGAGTACggagagtctgactggacgttgctactgggaggtggagaagAAACGGTATGAAGTTGATGTAGCAGTCGCATACGAGAATAACAGACGAGCAGGGCGCTCGGGTGACGTTGCATTTGGACACAATGACAAATCTTGGGCATTAGAATGCAACAAAAAAGggtatacatttatttacaacaaTGTACACACCACCATCTCAGGTCCTGTGTCCTCTAAaataggagtgtacctggatcacagcgCAGGTACTCTGTCCTTCTTCAGCGTCTCTaaaaccatgactctcctccacagagtccaggctatattcactcagcctctctacGCTGGACTTAGGTTTTATCCCACTACTGGAGACTCTGCGGAGATGTGTAAACTCAAGTAGACAGAATTCACTGAAAGGCGCTGACGtcacttcggtgtgttctgaggcacttttttgaccaactcggggagactgatcagtccgactgccttttctgccaacggTCGGCTATCGGGTTGAATTCTGTTTTTTAACTCCTAATTCAATTTGTCTCCATATTTGTTGCTCAGAGCTGATTGTTGTGGCAATTCTCACTGCACAGAGATCAGCTATCAATCGAACATGACATTTTCtaaattgttgtattttgtttgcGTTACCGATgggcag

Function

GO:

id name namespace
GO:0098772 molecular function regulator molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151795 lncRNA downstream 38540 6690670 ~ 6734980 (-) True G112581
TU151804 lncRNA downstream 46753 6726411 ~ 6726767 (-) True G112590
TU151791 lncRNA downstream 75481 6695610 ~ 6698039 (-) False zmynd11
TU151792 lncRNA downstream 75481 6695610 ~ 6698039 (-) False zmynd11
TU151778 lncRNA downstream 78019 6691784 ~ 6695501 (-) False G112578
TU151788 lncRNA upstream 8252 6783945 ~ 6802154 (-) True G112579
TU151851 lncRNA upstream 98972 6874665 ~ 6949132 (-) False G112617
TU151852 lncRNA upstream 164422 6940115 ~ 6949132 (-) False G112617
TU151848 lncRNA upstream 168529 6944222 ~ 6949132 (-) False G112617
TU151849 lncRNA upstream 169512 6945205 ~ 6949132 (-) True G112617
XM_039815262.1 mRNA downstream 2124 6749460 ~ 6771396 (-) True LOC120568068
XM_039815264.1 mRNA downstream 4622 6765048 ~ 6768898 (-) True LOC120568070
XM_039815261.1 mRNA downstream 9470 6761022 ~ 6764050 (-) True LOC120568067
XM_039815266.1 mRNA downstream 13384 6757854 ~ 6760136 (-) True LOC120568073
XM_039815263.1 mRNA downstream 21742 6749460 ~ 6751778 (-) True LOC120568069
XM_039816055.1 mRNA upstream 28215 6803908 ~ 6867658 (-) True LOC120568496
XM_039816056.1 mRNA upstream 28215 6803908 ~ 6814159 (-) False LOC120568496
XM_039816030.1 mRNA upstream 180747 6956440 ~ 6990122 (-) True si:ch211-267e7.3
XM_039816029.1 mRNA upstream 180747 6956440 ~ 6988731 (-) False si:ch211-267e7.3
XM_039816028.1 mRNA upstream 180747 6956440 ~ 6988731 (-) False si:ch211-267e7.3
unassigned_transcript_534 other downstream 545736 6227703 ~ 6227784 (-) True trnas-uga_20
unassigned_transcript_533 other downstream 546774 6226665 ~ 6226746 (-) True trnas-uga_19
unassigned_transcript_532 other downstream 552423 6221016 ~ 6221097 (-) True trnas-uga_18
unassigned_transcript_531 other downstream 552986 6220453 ~ 6220534 (-) True trnas-uga_17
unassigned_transcript_530 other downstream 553566 6219873 ~ 6219954 (-) True trnas-uga_16
unassigned_transcript_537 other upstream 1711774 8487467 ~ 8487539 (-) True trnak-uuu_16
TU152428 other upstream 2004759 8780452 ~ 8790042 (-) True G113070
unassigned_transcript_538 other upstream 2096741 8872434 ~ 8872505 (-) True trnag-ucc_9
unassigned_transcript_540 other upstream 2097717 8873410 ~ 8873482 (-) True trnak-cuu_1
unassigned_transcript_547 other upstream 2116238 8891931 ~ 8892004 (-) True trnan-guu_6

Expression Profile