RNA id: XM_039815269.1


Basic Information

Item Value
RNA id XM_039815269.1
length 2378
RNA type mRNA
GC content 0.44
exon number 6
gene id atp1b3a
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 33292188 ~ 33298786 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGATCGTACACTCAAATGACAATTTCTTCAGCCCACAGATGAGGAACAACAGAAGGCATTTGTTCTCGTGTGTGGTCGAAAGCTCGTAGTTAATTATACATGGCCGCTCTTGTCTCTCATTATGTCTCTTTTCCATTCTAATTCTGTTCCTCTTAACTCCCTCCAGCCCTCATCCTGTTGTTCTACCTGGTTTTCTACTGTTTCTTGGCCGGTATGTTCGCCCTGACCATGTGGGTGATGCTGCTCACTCTGGACGACTACGTGCCAAAGTACCGAGACCGCGTTCCCTATCCAGGGTTGGTGATTCGTCCAAATGCACTGGATATGTCGTTCAACAAATCCGACCCGCTGAAGTATGCAAAGTATGTCCAGCACCTGGAGACCTTCCTGCGAAgttataATGAtacagagcaggagaagaacGAGGACTGCCCCCGGGGGGAGTATTTCATGCAGGATGACACCGAGGACATGACGAAGAAAGCTTGCCGCTTCAAGAGGGGCTTCCTGAGTCTCTGCTCTGGACTCTCTGACACCAACTTTGGATATTCTGAGGGGAAGCCCTGCATACTGCTGAAAATGAACAGGATCATTGGCCTGAAGCCTCGCGGGGATCCCTACATCAACTGCACAGTAAAAAGAGACACCCCGATTCAAATGCAGTATTTCCCCAGTGAGGGGCGCATTGATAAGATGTATTTCCCCTACTACGGCAAGAAAGCCCATGAGTCTTACGTCCAGCCCCTGGTGGCcgtgaagctgctgctcaccAAGGAGGACTACAACAAGGAGCTGCCGGTGGAGTGCAGGGTGGAGGGCACCGACCTGCGCAACAACGACGAACGGGACAAGTTCCTGGGCCGCGTCACCTTCAGGATCAAGGTGGTCGAGTAAAGGAGAAGACGgccagtgggaaaaaaaaataaataaaaaaaagccaacCCGATGCAGAGGCTGCCCACGTTCGCTAAGGATTTATgttttcaaaatgaaattaaCGAGGAAGGAAGTGTCACAATACGTCAAAAAGGCGGTATTTTTTTTGGGATGTGGCCAAAACGGTTTTGATGTAGATAGGAGAGCCAGATAGATGCAGATATATGAATGTTGCTTTGCTGACACTTTCTGacccttctttccttcctgaTCTCGTCAAAGATCCAAGACACAGGCTCCGCTCTGGACCCCATCCATCCTTTCATTCACCTGTTGCACTGATTCTTCTTCATTCAGTTTATCATtacatgtgatttttttttttttttttttttttttagtattgaTGTGATTAGATAACTTATAGCTATTGCAACCAAGCCATTTGGAGCTGTTGTGTAATTGCGGATACtacttttatgtgtttttttttttttagatctttCTGCTGTCAGGAAGAGTGTTTATTCTCATCTCTGCAAACTGTATGAACGACTGTATTATCGCTGGCGTTGAGAGGATTTTTATCTTGCTGTATAGTGTAATTGAGAAGGTAGAACATTTCCAAACACGTCTCCAGAGTAGTTCACATTATCACATTACAAAGACTTCATAGGAACGTACCTTGATAATCAAGTATAGCCATTGTATCCCTGTATATGAAATGTCAATTACAAAGTCCCTTTCTACATATAAATACGTTGTGATCCTTACCATATTTAGGGAATTATAGATAGTTCTTTGTGTTGTGGTCTGCGTAGCCACAACCCAGTCTTgtgctttctgtctgtctgtctgcatgtccgtctgtctgtccgtcttcCTGTTTACTCACCTCTCCACTGCAATAGCCAACATGTGGGTGAGCCCTCCAGGACAAGATCAGTTGTCTCGCTCCACCTCGCAGGGGGGCTGGGCTGGGTAGTGATGTTGGCtgaggtgacacacacacacacacacacacacacacacacacacacacacacacacacacacacaagaaggtacagtgtaaaaaaaaaaaatgcttacaAGGCGGAGAGGccctgcaaaaacaaaaaggttcaCTGTAACTCTGAACTGTATATCTCTACGTGATCTGTATATCTATCTGGGTCTCAAAGATTGTTaagttttctctcttctctcagcCTGTTGATCTGATTGTCTGCCAATCTATTACTCttcaatgtatatatatacacactatctACCATATTTACTTCATTCACACTGTATTTTTGTCACAAAACACAATGTCTGTGCACTGTAAAGAAATAATTTAAGCAAAGATTTACAGGAAATTATCTTATTCAAAGCTATGTTTACACAGTCTTGAAAGGAACCCGCGTTTGAAAGACCAACTTGTAACATCTCTTCAGGGTGCCTTAAGACCTGATGAAATAAATTGTGGAATAAAAGTGATTTTGAAGAAAAACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161341 lncRNA upstream 1608 33290330 ~ 33290580 (+) True G119767
TU161328 lncRNA upstream 22986 33268370 ~ 33269202 (+) True G119763
TU161305 lncRNA upstream 98989 33192587 ~ 33193199 (+) True G119744
TU161290 lncRNA upstream 106296 33181456 ~ 33185892 (+) True G119733
XR_005640730.1 lncRNA upstream 126090 33163933 ~ 33166098 (+) False LOC120568463
TU161485 lncRNA downstream 215225 33514011 ~ 33515423 (+) False pkn2a
TU161502 lncRNA downstream 239386 33538172 ~ 33562071 (+) True G119901
TU161526 lncRNA downstream 299087 33597873 ~ 33598657 (+) True G119922
TU161561 lncRNA downstream 512290 33811076 ~ 33851937 (+) True gng12a
XR_005640825.1 lncRNA downstream 562652 33861438 ~ 33866996 (+) True LOC120569016
XM_039815267.1 mRNA upstream 6722 33273117 ~ 33285466 (+) True gk5
XM_039816011.1 mRNA upstream 111600 33126780 ~ 33180588 (+) True LOC120568455
XM_039816012.1 mRNA upstream 141896 33126780 ~ 33150292 (+) False LOC120568455
XM_039814666.1 mRNA upstream 165388 33075783 ~ 33126800 (+) True LOC120567698
XM_039815989.1 mRNA upstream 222135 33051009 ~ 33070053 (+) False apol1
XM_039815127.1 mRNA downstream 57721 33356507 ~ 33365322 (+) False stk25b
XM_039815125.1 mRNA downstream 57722 33356508 ~ 33365322 (+) True stk25b
XM_039816506.1 mRNA downstream 109902 33408688 ~ 33410016 (+) True LOC120568799
XM_039816488.1 mRNA downstream 115289 33414075 ~ 33419694 (+) True cldn18
XM_039815452.1 mRNA downstream 135416 33434202 ~ 33473617 (+) True hs2st1a
TU161294 other upstream 126088 33163916 ~ 33166100 (+) True LOC120568463
XR_005640727.1 other upstream 245054 32989790 ~ 33047134 (+) False tep1
TU161084 other upstream 510717 32780988 ~ 32781471 (+) True G119585
TU161083 other upstream 516506 32775074 ~ 32775682 (+) True G119584
TU161081 other upstream 522336 32768707 ~ 32769852 (+) True G119582
TU161343 other downstream 6036 33304822 ~ 33307864 (+) True G119769
unassigned_transcript_564 other downstream 103465 33402251 ~ 33402322 (+) True trnap-ugg_4
TU161565 other downstream 559756 33858542 ~ 33859847 (+) True G119957
TU161681 other downstream 656397 33955183 ~ 33957504 (+) True LOC120568585
TU161769 other downstream 865317 34164103 ~ 34165846 (+) False mrpl34

Expression Profile