RNA id: XM_039815271.1


Basic Information

Item Value
RNA id XM_039815271.1
length 2067
RNA type mRNA
GC content 0.52
exon number 9
gene id bcl6ab
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 15580776 ~ 15587884 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACGGCCCTCTGTTGAAATTCCGAGAATTGAGCTGCTCTGTTTCTTAGAACTGGATTCTCAGAACTGGTGATGCACAGAGTTTCGAGGAAACTTTTACAAGATTGTGACAGCATGGCCACGACTGCAGATGGCTGTATTCAATTCACACGCCATGCAGGTGACGTCCTACTCAACTTTAACCGCCTCCGCAGCAGGAACATCCTGACTGACGTCGCCATACAGGTGGACGGGCAGCATTTTCATGCTCACAAGGCCATCTTGGTGGCCTGCAGTGGCTTCTTTTATTCTGTGTTCATGGACCCCAAAAACGCAAACCTTAGTGCCATCAGCTTAGACCCCAAAGTGGACCCCAAGGGTTTTTCCATCCTGCTGGACTTCATGTACACATCCTGTCTGGACCTTAAGGACAGTCTGGTCCTGGCCACCATGAACACAGCCATCTACCTCCAGATGGAACATGTGGTCGACACCTGCCACAGGTTCATCAAGTCCAGGCATCCGATTGAAGAGGTACAGATCAACTCATCACATCTGGCTGAGGAGATCCCTGCTTTGAGGCCTGTTGATGAGAAAGAGCCAGACTTTAGGAACAACCACAAGTCATCCTCATCCCCTCTCCAGGAATGCAGGAGCTACATCCCTAACGTTTTCAGGGGGATCAACACCTCTGGTTCCTATCATGTCTATGGTGACCCCCACGTCCCCGCTGGGAAGCTAGAAGATTTCCATAAGGTCAGTGACCTTCCCAGAGAAGGGGATTTGTCCCAGAAACGATGCTTGCAGGTACCCAGCGCCAACATGGCTCACAATGAGTCCACCACTATCATCTCCCACCCTGTGCCATTCCACCCAAGTTTCCCCACCACTATCATCCGACCAGATGGAGCACACAGGAGCCTTCAAAGGCCTGTCTCTCCCATGGAGGAAGATAGCATTCAGCACCCACAAACCAGCTACCTAACATTGTCTCCAGGGTTTAGCAAAGGTGTGATTTGCAGCCCTCAAAGCCCCCTCAGATCTGACTGCCAGCCCAACTCGCCCACTGAGTCTAACAGcagcagaaacgccacgctGAGCCTCAGACAGCTCTCAGACTGCGCCAAAGACGCCAAGGCCCGCAATTGGAAGAAGTACAAGTTGATCGTTATGAACCAAACTCCTGATGAGAATGAAAAGGAGGCTCGGAGTGGCAGCGCTGAAGCTATATCCATGTCGCCCTCACTGAGCCCCTGCAGGAGTGGTGTAGCAGGTGGACACAATGAGGTCCAGGGAGAAGAGGGAGTCAACGAGCATAGAGAAGAAATCCTCATGTCTCAGAGTGTCGACAGCTGCAGTAGCAGCACCTGTAGCACCATCAGCTATCACAGATGCTCCTCTTGTGGCTGCGACAGCCCTCAGTGCATGGAAATGGGCCACCTTTCTCCTGACTCTTACAGCCGAGATGACGCCACCAAAATGCACTCAGAGTATTCCTCCTCCAGCTGTGAAAGCACCATATACTTCTGCAACGGGTGTGACTCCAAGTTCACAGATGAAGATTCCCTGAAAGAACACATGGCCCAGGTGCACAGTGACAAGCCATACAAGTGTGACTTCTGCCAGGCTGCCTTCCGCTACAAGGGCAACCTGGCCAGCCACAAGACCGTTCACACCGGTGCAAAGCCTTACCACTGCAACATCTGCGGCGCTCAATTCAACCGGCCAGCCAACCTCAAGACCCATACCCGCATCCACTCTGGAGAAAAGCCATACAAGTGTGAGACGTGTGGTTCCAGATTTGTccagGTGGCCCATCTTCGCGCCCATGTGTTaatacacacaggagagaaaccgtaCCCTTGTGAGATCTGTGGAACTCACTTCCGCCACCTTCAGACGCTCAAGAGCCACATGCGCATTcatactggagagaagccttaTCATTGTGAAAAATGTGACCTCCACTTCAGACACAAGAGTCAGCTGAGGCTTCATCTGCGACAGAAGCACGGCGCAGTCACTAACACCAAGGCTCAGTATCGCAGGATTCCCAGCAACATCAACACAGGCCTGGTGAACTCCTGCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154969 lncRNA downstream 173991 15407377 ~ 15407627 (-) True G114883
XR_005640790.1 lncRNA downstream 188359 15387478 ~ 15393259 (-) True LOC120568803
TU154900 lncRNA downstream 315394 15264520 ~ 15266224 (-) True G114836
TU154790 lncRNA downstream 499638 15076141 ~ 15081980 (-) True G114752
TU154756 lncRNA downstream 578573 15001144 ~ 15003045 (-) True G114733
TU155136 lncRNA upstream 133135 15721019 ~ 15727229 (-) True G115017
TU155169 lncRNA upstream 147170 15735054 ~ 15735281 (-) True G115041
TU155170 lncRNA upstream 147596 15735480 ~ 15735895 (-) True G115042
TU155171 lncRNA upstream 148645 15736529 ~ 15736827 (-) True G115043
TU155176 lncRNA upstream 153940 15741824 ~ 15745228 (-) True G115048
XM_039815273.1 mRNA downstream 8478 15568830 ~ 15573140 (-) True fam78ba
XM_039816860.1 mRNA downstream 27649 15549860 ~ 15553969 (-) True imp3
XM_039816221.1 mRNA downstream 34261 15537896 ~ 15547357 (-) False zgc:55943
XM_039816257.1 mRNA upstream 28513 15616397 ~ 15620659 (-) True cldn1
XM_039815030.1 mRNA upstream 335818 15923702 ~ 15954239 (-) True pigk
XM_039815031.1 mRNA upstream 357826 15945710 ~ 15954239 (-) False pigk
XM_039815825.1 mRNA upstream 445398 16033282 ~ 16054068 (-) False zzz3
XM_039815826.1 mRNA upstream 445398 16033282 ~ 16053700 (-) True zzz3
XR_005640845.1 other downstream 168559 15412986 ~ 15413059 (-) True LOC120569143
XR_005640844.1 other downstream 169151 15412393 ~ 15412467 (-) True LOC120569142
XR_005640843.1 other downstream 169778 15411663 ~ 15411840 (-) True LOC120569141
XR_005640842.1 other downstream 170271 15411162 ~ 15411347 (-) True LOC120569139
XR_005640597.1 other downstream 277008 15290186 ~ 15304610 (-) False mfsd8l2
TU155326 other upstream 556276 16144160 ~ 16148121 (-) True G115164
XR_005640638.1 other upstream 594770 16182654 ~ 16201698 (-) True cc2d1b
XR_005640639.1 other upstream 594770 16182654 ~ 16201257 (-) False cc2d1b
XR_005640637.1 other upstream 594770 16182654 ~ 16201257 (-) False cc2d1b
TU155443 other upstream 743069 16330953 ~ 16335932 (-) True LOC120568735

Expression Profile