RNA id: XM_039815282.1


Basic Information

Item Value
RNA id XM_039815282.1
length 2202
RNA type mRNA
GC content 0.50
exon number 9
gene id pcyt1aa
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 28192915 ~ 28203729 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GACTAATTAATTCCTATCAAAGTTTTGTAGTTCCTGGGTTGTTGACCTGTCAGCATTGTAGTACAAGCTGTCATTGCTGATAATCTGTCTTTCCTTCTGGTAGTTGCACTTTTCGGTCAGCAACACAGCGAGCTCCAGGAGGGCGTCGGACTCACAGGGTTGTTCGTAATCACCGTTGTTGCTGGTGTCAGCTAACcagcgagctaactgctaaagttagctaacaAGCCAACCAGCTTTACagctagcttgctagctagAATTAGACGGtagctagcagcgttagctaTCTTGCCTGCTGGCATTACGAGGCTAGGAAGCTGCCCACTGCTGCAAAGCAGCATTCCGGACAAAAGACTAAACAATGGAGGCCCAAAGCTCCAGCGGGCTGCTGCTGTccagaaagaggagaagagaggccTCCAGTCGGGAGGCCGAGGAGGGAGAGAAGCTCGGGAAAATCCCCAGATGTACCGTGGGATTGAAGCACCCTGCACCTTTTGCAGATGAGCTGGTGCCAGCTGATGATAAACCCTACGTAAGAGTCAGCATGGAGGAGGCTAAGAGGGGAACACATCCTAACAGACCGGTGCGCGTGTATGCAGACGGCATCTTTGACGTTTTCCACTCAGGTCACGCCAGGGCACTCATGCAGGCTAAATGCCTCTTCCCAAATACACACCTCATCGTAGGAGTGTGCAGTGATGACTTGACCCACAAATACAAGGGCTTCACCGTGATGAATGAGGATGAGCGATACGACGCCATCAGTCACTGTCGCTACGTGGACGAAGTGGTGCGAAACGCTCCCTGGACGCTGACGCCAGAGTTCCTCACAAAACATCGCATTGACTTTGTGGCCCACGACGACATCCCATACTCCTCAGCAGGCAGTGATGACGTCTACAAGCACATCAAGGAAGCTGGTATGTTTGCTCCCACCCAGCGGACCGAGGGCATCTCCACCTCTGACATCATCACACGCATAGTCCGGGACTACGACGTGTACGTCAGACGCAACCTGCAGAGAGGATACACCGCCAAGGAGCTCAACGTCAGCTTCATTAACGAGAAGAAGTACCACCTGCAGGAGCGCGTGGACAAGGTGAAGAGAAAGGTCCGTGACGTGGAAGAGAAGAGCAAAGAGTTTGTCCAGAAGGTGGAGGAGAAGAGCATCGACCTCATCCAGAAATGGGAGGAGAAGTCCAGGGAGTTCATCGGCAACTTCCTGCAGATGTTTGGCCCCGAGGGAGCTCTGAAGCACATGCTGAAGGAAGGGAAGGGCCGCATGCTGCAGGCCATCAGCCCCAGGCACAGCCCCAACAGCAGCCCCACCCGCGAGGAGCGCTCCCCCTCACCCACCTTCCGTCTCCCCTTCTTCACCAAGACCTCCCCGCCTCCGTCGCCGCCACCCCACCCCAGCGGAGCCCGCGGATACCTCATCAGCgaggacgacgacgacgacgacgaggaGGATGACGAAAACTAGAGCCCGTTTTCAATCCGTGGCCGGGGCCGCAGTCAGCGCTACCAGTTAACTTAGGTGTTGAGTAACGTGGTTTTCATCCAGCTCCTGCTtccactttgttttttgttgttgttgttgtttacgattgtaatattatttttttttagccctTCAGAGTCACGTAAACTGTAACAGCCAGTTTCTTCACAGCTCTAGTTTTTAACCATTTTAGGCAATTATAtcctcttttgtttttgtgtaacGGTCAGTCAAAGTCACCACTAGTCACTGGTTGAGTTCTTAGAAAATTCGTCTCATTTATctcaagtcactttttgatGTTGAGTTTGTTAGTCGCTCACTGTCACTTAGGAATATGTCTTTCATCTATGACTGTATTCTTAAGTTTAGcgttatagttttttttttttttgtcatggctTTAGCGGGAGGGCTCGCAGCTTTTTGGTCACTTGCTGGAACAGCACGTCTAGTTTGGTGTGGGAGAGGTGAGCTGAGACACTGTCGATTATCTCCAGGGGAGGCTTTTTAGAGCAGGTCAGGAAACTGGACATTTTAAATGATCTGCTCACGTGGGGCAGTTCATATTTTGCTCATActaacaagaaaaaaacaacctgacTTTTTAAATAACCGGGAAAGTCCAGATCACGTCAAATGTGAGCTGAAATCTTAGTCGTATGTGACATATGTCTACTAATCAGCAGCTACCA

Function

GO: NA

KEGG:

id description
K00968 PCYT1; choline-phosphate cytidylyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159816 lncRNA upstream 14574 28176487 ~ 28178341 (+) True G118575
TU159792 lncRNA upstream 33326 28156973 ~ 28159589 (+) False LOC120568082
TU159804 lncRNA upstream 73291 28119267 ~ 28119624 (+) True G118564
TU159760 lncRNA upstream 150725 27944251 ~ 28042190 (+) True G118537
TU159779 lncRNA upstream 155585 28036461 ~ 28037330 (+) True G118549
TU159790 lncRNA downstream 5986 28209715 ~ 28214108 (+) True G118554
TU159927 lncRNA downstream 57143 28260872 ~ 28261084 (+) True G118641
TU159932 lncRNA downstream 250787 28454516 ~ 28455138 (+) True G118645
TU159933 lncRNA downstream 276300 28480029 ~ 28480339 (+) True G118646
TU159934 lncRNA downstream 281541 28485270 ~ 28485708 (+) True G118647
XM_039815281.1 mRNA upstream 22945 28156801 ~ 28169970 (+) True LOC120568082
XM_039814618.1 mRNA upstream 88457 28086817 ~ 28104458 (+) True LOC120567659
XM_039814528.1 mRNA upstream 167669 27960902 ~ 28025246 (+) True dnah9l
XM_039815853.1 mRNA upstream 354797 27738992 ~ 27838118 (+) True epha4b
XM_039815854.1 mRNA upstream 354797 27738992 ~ 27838118 (+) False epha4b
XM_039815057.1 mRNA downstream 69938 28273667 ~ 28473545 (+) True clstn2a
XM_039815387.1 mRNA downstream 676916 28880645 ~ 28893212 (+) False LOC120568119
XM_039815388.1 mRNA downstream 677325 28881054 ~ 28893212 (+) False LOC120568119
XM_039815386.1 mRNA downstream 677325 28881054 ~ 28893212 (+) False LOC120568119
XM_039815384.1 mRNA downstream 679094 28882823 ~ 28893212 (+) False LOC120568119
TU159791 other upstream 33326 28156973 ~ 28159589 (+) False LOC120568082
TU159680 other upstream 583197 27602024 ~ 27609718 (+) False LOC120568838
TU159378 other upstream 1306885 26883559 ~ 26886030 (+) True G118234
TU159241 other upstream 1423004 26765492 ~ 26769911 (+) True G118149
TU159178 other upstream 1592843 26590830 ~ 26600072 (+) True prkab2
TU160295 other downstream 1764684 29968413 ~ 29969850 (+) False LOC120567689
TU160411 other downstream 2365666 30569395 ~ 30574881 (+) False LOC120568595
TU160502 other downstream 2967488 31171217 ~ 31196233 (+) True G119114
TU160516 other downstream 2995231 31198960 ~ 31200014 (+) False G119123
TU160672 other downstream 3256135 31459864 ~ 31460908 (+) True G119257

Expression Profile