RNA id: XM_039815284.1


Basic Information

Item Value
RNA id XM_039815284.1
length 1676
RNA type mRNA
GC content 0.47
exon number 5
gene id LOC120568084
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 28185959 ~ 28188829 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGAGAAATTCAGAACATGTTGTTTGTTTGGCAGCTATAGATTTAGAAAGACATAATGTTTTTTAATTGATAAAGGCTACCTCCACTGATGGCTTCATCCAATCCAAGACTATGACTCCATAGAAAGAGCTAAGAAACTGGACTGCATGTGCACCCAGAAGGTGACCTGCTGTTACAGGACTGTGCCTTGTGGCTTTACAAGGAGTCCCATTTTGTTTGAAGTTGGTCTTTTACTGCTTGTTCATCCTCAGTGTGCTAATGAGCTCGTCCACGTCTCAACAGAAAATGCATGAGGGGTGGAGTCAAGCCTACTCGCAGCTCAGTGGCCAATGGAAGGGCCCCGGTATTAACAGCAGTATTTATGAACAGTTATGTTGTGCAGTGGATTAGAACAGGACTGGGTGAGATGCAACAACAGTTGCAGATGTCCAGGATGATTTCCCAGGTGTCCCTGTTGAGGGCACTATGCTATGTGCTATTGATGCCAGGTTTGCTAGAAGCAACATCTCTGATGAAAGTAAAGAATCCTGGAGGAAATCCGGTTAACATTGGCTTTGCTCAGGCACATAATTTCTTGACTAATTCTCGACCTAAGAGGAACATTGACCCAAAGTGGTACAGAGGCACTCCTGATTTCCAGTCCTACTACCGATACTACAACAGTATTGGGCACATTGAAGGGCTCTACGAGATCGACAGGATCAGGATGTTGTATCAGCAGATGCGTCACTTGGAGTTGACCTATGGCCCGGATGCCTCCAGTTACCAAAGTGTTATGGGTGTACTGACTACCACCGCAGCACCATCTACTACCTCTACTACCACTCAgcctcctccccctcccaccACCCCTGCTCCTACACCCGACCCTCTGGAGAAAGCCCAGAGAGTCTATCTGTGTAACCCCAAAGATCCACTGTGCAAACCTCAGATCGTCTACCTGCCAACGGGGGCTGTTCCGGTACTGTGTGACCCACGAGTCAACCCCGCCTGCAGGCCCAAAACAGGGGAGGAGGTAAAAGCTGCTGCTCTTCCCCAACTACCCCCGGCTCCTCCTGCTCCCAAAAAGTCTGTCCCGGTCCCCCCTCCTGCTATCACTGTTAAAGCTATGGAGTACGACTGTGACCCATACTGGGACCCTGACTGCCTCATCGATCACCCTCCCCGCCCCATCCAGGAAACTACCACGCCAGAGGCCCCCACTGAAGAGAAagtagagaaagaggaagtagCAAAAGCCGAAGAAAGTGTCCCTGAAGCACCAGCCACCCAGAAAGCCCCTTACTTTGACCCTTATGATTTCACACGTGACCTGTATGACCCCTTTCGTTATGCCGATCCAGCTCCCGAACCAGAGTAAAAACAAATGAGAACCTTCTATGCAGCATAAGACTACCACATTAAATCACAAGACCAAACCAAGGCAGGACTGTGAGCAAATCCACGTTAAAAACAAAGGCTACAATTCAAATCATGCAAATGATCCAATGTTGTACAGGACAGACATGTAGACAATGCTTTTACAGTATGCTCGGTTTTTCCACATGAAAAACCACACTTTGACTCATCTTTTCATGGGTGTTCATAAGAAATGCACAAACAATTTTGTATTGAATAAAATcaatagaaaaagaagaagaattgaTTGACTACTGGTAATAAATATGTgtgaattta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159884 lncRNA downstream 37702 28146370 ~ 28148257 (-) False metap1d
TU159885 lncRNA downstream 40925 28144428 ~ 28145034 (-) True G118613
TU159867 lncRNA downstream 86149 28095023 ~ 28099810 (-) True G118608
TU159713 lncRNA downstream 521247 27627886 ~ 27664712 (-) True G118504
TU159685 lncRNA downstream 580718 27602401 ~ 27605241 (-) True G118483
TU159912 lncRNA upstream 11308 28200137 ~ 28200551 (-) True G118632
TU159916 lncRNA upstream 16882 28205711 ~ 28206241 (-) True G118636
TU159956 lncRNA upstream 282138 28470967 ~ 28473620 (-) True G118668
TU159959 lncRNA upstream 292810 28481639 ~ 28481897 (-) True G118671
TU159970 lncRNA upstream 467832 28656661 ~ 28657022 (-) True G118678
XM_039815280.1 mRNA downstream 620 28169960 ~ 28185339 (-) False LOC120568081
XM_039815278.1 mRNA downstream 620 28169960 ~ 28185339 (-) False LOC120568081
XM_039815279.1 mRNA downstream 620 28169960 ~ 28185339 (-) False LOC120568081
XM_039815277.1 mRNA downstream 620 28169960 ~ 28185339 (-) True LOC120568081
XM_039815275.1 mRNA downstream 33189 28146271 ~ 28152770 (-) True metap1d
XM_039815288.1 mRNA upstream 17889 28206718 ~ 28221404 (-) True LOC120568085
XM_039815287.1 mRNA upstream 17889 28206718 ~ 28216623 (-) False LOC120568085
XM_039815286.1 mRNA upstream 17889 28206718 ~ 28216623 (-) False LOC120568085
XM_039815290.1 mRNA upstream 33051 28221880 ~ 28238517 (-) True LOC120568087
XM_039815289.1 mRNA upstream 50661 28239490 ~ 28249087 (-) True copb2
TU159738 other downstream 467200 27717551 ~ 27718759 (-) True G118524
TU159739 other downstream 471569 27713467 ~ 27714390 (-) False G118524
TU159721 other downstream 510599 27670976 ~ 27675360 (-) False LOC120568986
XR_005640672.1 other downstream 1361389 26819838 ~ 26824570 (-) False cirbpa
TU159298 other downstream 1520007 26661621 ~ 26665952 (-) True G118175
TU160079 other upstream 797262 28986091 ~ 28986319 (-) True G118764
TU160179 other upstream 1231550 29420379 ~ 29420652 (-) True G118856
TU160248 other upstream 1455534 29644363 ~ 29649792 (-) False LOC120567741
TU160542 other upstream 2675417 30864246 ~ 30865494 (-) False LOC120568929
TU160545 other upstream 2675417 30864246 ~ 30876080 (-) True LOC120568929

Expression Profile