RNA id: XM_039815297.1


Basic Information

Item Value
RNA id XM_039815297.1
length 3637
RNA type mRNA
GC content 0.43
exon number 10
gene id LOC120568089
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 15137827 ~ 15146730 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCACACGCGACTCTCAATGTGTAATGTCTTGTATACATGATGCTAGTACGCTGCATGTTAAGAGGGTCGAACAGCTAAACAGCGCGTCTTAAATTAAAAGTACATTAATTCTCCAGGCAGTACACATAGTAGACTTTTATCATAGAATAGTTCACCCCACTACGAAGTTTCAATGAAGTAAACGAGGCAGTAACGCAGATGTTCAGACTGTGCATTACTCTACTAAAGAAGCCGCCAGAAGTGGAAGCAATTACAAGGACAGCTGAGTAAGCTATGGAAATCCTATAGAGGTGTGAGAGAGCCCACAAATACATCAGCATCCAACAAGAGTACACACCTTTCCACTTCAAGTTTACTGTGGTTCAGCTGGTAACAGCTGACCTGTAGTATCAAGTGAATCTGAATCTAAATCTGAAACAGTCATTAGAGACAGTAGACCATGGCCTAGACAAATAAAATCCTGTTTCAGCACTGTTGCATGTCAGCTATCTGACTCAGACCTTCAGCAGCTGAAAGGATACCCATAACTCAATGCTTTCATGTGACCCTCCATCGTTCAATCCAATCAATCTCTCCCAGATGCACCGAACACAGAGCCACCGAAGCAAAGCAAAATACCTCAAGAGAAAAAAGGGATTCCTGTCTTCGGTCAAAGGAGTTTCTCATCTCTCCAGGCGAACCAAGAGACGCTTATGTTGTAAATTACAGCTTTGGATGTGGAGGAAGCGGAGGGAGAAATGCCGTTTTGGTTTATTCAGAGCAAAGAAAAGAGCTTGTGGGATCAGCCCCGGCCCCTGCCTCCGTGTAAAGACGCAATCACTGAAAAATGAAAGCAAAGTCCCAGTTTATCACACAACAAACCTTGAAAATTCAGTCATTACATCAGCTCTTGTGTCACCTCTTGGATGTGATACTGGAGGTTCCGAGGACACGCTCAGAGGGCAGAATTGCCTGCTGAAGCTCTGTGaatctgtcagtctgtcagaaTCGTTAATTGCTTCCAGTTCCTTGCAGAACCTGGTTACGGACTCGAATGTTTCTGCGGGTATCATTGATCAAATCATGCCAACGGCGATGGTGCCGTCTCAGAAAACAGAAACTTTGATACAGCTCAGTGAAACTACCACCCCTTTAAAACTTCCTTGCACCGTCAAAGACATGTTGAGTACAGACAGGGATGCATGTGGGTTAACTACAAATTTTAAAGAACCAAGGACAATGGTACCAGCTCAAAGGCTTGAGGTTGATGGCCCCTCGGGACAATTCACTGCTGCCAGTCCAGATCAGGACCAGGCTGCAAACACAGACACTGATGAGAGAATCACCAGTAAAAGGGCTGCGTCTTCTCAAACTGATCTCAGTCTACTGACAAAGGACATCCATGAGTTTCTTGATGAGTTCTACAGAATATATGGAAGTTTCATCCCATTACAAAAGAGAGATGTGTCAAGACATTTGGAGAGGAAGTTTAACACTGATTTCAGCGACAGGAAAAATGCCATCTTCTCGGAAGTTGCCAAATACCGAACTGCAATCGCTCAGAAGCCTGTTCCCTCCTACCAGGTGGTCTACAAGAAACACACATTGACGCTGGATGACTTGTCCACACTGGCAGATCAGAACTGGCTCAACGACCAGGTCATGAACATGTATGGAGAATTGATTATGGAATCTGCTCATCACAAGGTACATTTCCTCAACAGCTTCTTCCACAGGCAGCTTATGACTAAAGGATATGATGGTGTTAAGAGATGGACAAAGCAGGTGGATTTGTTTTCTAAATGTTTGCTTGTGGTGCCCATCCACCTGGAGGTTCACTGGTGTCTGGTGACAGCTGACATGGTCAAAAAGAAGATCTGCCTTTACGACTCTCAAGGGAACGCGCTCCAAAAGAACATCCTGAAATACTTGATGTCGGAAGCAAAAGAGAAGAAGCAAACAGATTTTGAAAGTGGTTGGGCGGTGTCGTTCGATGAGATAATCCCACAACAGAGCAATGAAAATGACTGTGGAGTTTTTGTCTTGGAGTACTCTAGATGCCTTGCTCTGGCAAAACCTCTGCAGTTTTCACAGAAGGACATACCAAAGATACGCAAGAGAATCTACAAAGAGCTCTGTGACTGTAAGCTCCATGAAGAGGGCTGAAGGCTATTCTAtcattgtatgtatgtatgtatgtatgtattgccaataggggtgggcgatatggccaAGATCTTCTATCAGGGTATATATCATTTTATATCACAGTAATGGTATATATCACAATACAGcaattgttctgtaaagttgagttaaaaagaaaagatttaaaATGGCAAAACTAAAATTCTTTCAAAATGGAACCTTTAAGGTGTTACAGATTTTAAGGTTAACCTCCTCCTGCTCTGTATTTATAACTTCACTCTCCTCCATGTCTGCCCATATCCCATCACCTTGCCACGCAGCTGGATTAGCAAGAGAATACCTTCCAGGGTGAAAAAGGTACTGCCAAATCTCTGCCGGTGGACCCATTTCTACTGATACGCGGTATATATCGCCCAACCCTAATTGCTGGTAATATGTGCTGCTTCTGATTAGGGTAGTCCACACTTGTCTCTGGGCCTCATTAGCAGCTCCACAACAGCCTTACAGCACTGATTGCATACTGTATGGCTGACCCCAGTAGGAGTGTCTTAAATCAGGTGCATTTTCATGCTAAATCATAATCCTTGTATGATTACTGTATTTATACGATCAATATGTAATCAGGCATGTTATTTAAGAAAAAGATCTTTATATTCCTGTTAGACCTCGACTTGGAGTTTACACATCTACAGTGGACCTACAGAGCCTTACCGGATGGACTGCCTGTCAACATATATCTAATCTGTCTCGGTCCTCAACTGTTTTTTAGGTGTTACTTAGTTTTTAATTGAAGGTGCTATaagtgatgttgggtgacgtcacttcttgttgacgttcgaagtattgtcaaacaaaacggaggctagctcgccccttcctcctcctcatgccgtcccctcctcctcccttccgcgcactaacccccccccaCTGTTATGTTTCTTGGTctaggttggcacagtttgtttttgatgCCGTTTGTGGAGCATGGGCTGGctacagagaccgtgttttttttttttacagtgtgttcaggggacaggcagctagcagatagtgagatgtttgctgtatgtgacaaaaaaaatttgtaaaaacaaaaaaacacgcgtgacatcgcttagagcacctttaagtatcCGTACACCTTATTTGCACAATTTGTAAGTCTCATTTTGCTTCATTTGACATTTGTTGGCACCAGATGGCTGGATAGAAGCTGTGTGTATTGTTTATAAGGAAACTGGAATCTGTGTCCAAAGGCATAACAGAAATATGTATGTAAAGTTTTAAATAAAAGCAGACCGCTTCCAAACATTTCataaagtttattttattttttcactggACTGATCAGGTTCTGTATGCACTGCATGCAGAATAGCATTTGTCATTTATATTGGGGTACATACACATTTGTAAATACACAACTTCCTAGCTATAGACAGGTATTTAATTCATCCAGTAGATTATGGCTGTATTTGAGTGTGTCCCTGAACAGTTATAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154790 lncRNA downstream 55847 15076141 ~ 15081980 (-) True G114752
TU154756 lncRNA downstream 134782 15001144 ~ 15003045 (-) True G114733
XR_005640751.1 lncRNA downstream 179424 14954578 ~ 14958403 (-) True LOC120568695
XR_005640836.1 lncRNA downstream 355355 14780276 ~ 14782472 (-) True LOC120569096
TU154667 lncRNA downstream 386299 14751245 ~ 14751528 (-) True G114661
TU154900 lncRNA upstream 117790 15264520 ~ 15266224 (-) True G114836
XR_005640790.1 lncRNA upstream 240748 15387478 ~ 15393259 (-) True LOC120568803
TU154969 lncRNA upstream 260647 15407377 ~ 15407627 (-) True G114883
TU155136 lncRNA upstream 574289 15721019 ~ 15727229 (-) True G115017
TU155169 lncRNA upstream 588324 15735054 ~ 15735281 (-) True G115041
XM_039815956.1 mRNA downstream 9862 15120583 ~ 15127965 (-) False zbtb41
XM_039815955.1 mRNA downstream 9869 15120583 ~ 15127958 (-) False zbtb41
XM_039815954.1 mRNA downstream 9869 15120583 ~ 15127958 (-) True zbtb41
XM_039815948.1 mRNA downstream 93174 15039845 ~ 15044653 (-) True LOC120568424
XM_039816377.1 mRNA downstream 220396 14895172 ~ 14917431 (-) True LOC120568704
XM_039815303.1 mRNA upstream 5396 15152126 ~ 15159774 (-) False LOC120568091
XM_039815301.1 mRNA upstream 5396 15152126 ~ 15159774 (-) False LOC120568091
XM_039815300.1 mRNA upstream 5396 15152126 ~ 15159774 (-) False LOC120568091
XM_039815302.1 mRNA upstream 5396 15152126 ~ 15159774 (-) False LOC120568091
XM_039815299.1 mRNA upstream 5396 15152126 ~ 15159773 (-) True LOC120568091
TU154687 other downstream 340783 14795918 ~ 14797044 (-) True G114680
TU154602 other downstream 522055 14613613 ~ 14615772 (-) False LOC120568687
TU153973 other downstream 2049264 13084561 ~ 13088563 (-) True G114152
XR_005640810.1 other downstream 2369202 12760915 ~ 12768625 (-) False LOC120568934
TU153584 other downstream 2534918 12601180 ~ 12602909 (-) False nedd8l
XR_005640598.1 other upstream 143456 15290186 ~ 15304610 (-) False mfsd8l2
XR_005640597.1 other upstream 143456 15290186 ~ 15304610 (-) False mfsd8l2
XR_005640842.1 other upstream 264432 15411162 ~ 15411347 (-) True LOC120569139
XR_005640843.1 other upstream 264933 15411663 ~ 15411840 (-) True LOC120569141
XR_005640844.1 other upstream 265663 15412393 ~ 15412467 (-) True LOC120569142

Expression Profile