RNA id: XM_039815308.1


Basic Information

Item Value
RNA id XM_039815308.1
length 2906
RNA type mRNA
GC content 0.57
exon number 17
gene id rnf220a
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 11722117 ~ 11874494 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

caaacgGCTCTTTTCTGAGCCCCTTCCTTCAAAAATCCCCAAACCTTTAGTCTCCAACCTAGGTTCCCTCACTTCCTCAGACCCTTTCCGAGGGTCTTGGACAATTGTCTCAAATTTTACTGAGGAGGAATTATCTCCTCCTCCCCCTAAAATCCTTACGGCCTCTTTCTTCCGTTCAGACATGGATCTTCACAGGGCAGCCTTCAAGATGGAGAGCTCCTCCTACCTGCCCAATCCCCTGGCCTCCCCGGCCCTCATGGTCCTGGCCTCCACTGCTGAAGCCTCTCGCGATGCCTCAATTCCCTGCCAGCAGCCACGTCCGTTTGGTGTCCCCGTTTCTGTTGAGAAAGACGTCCATTTGCCATTTAACAATGGTTCTTACACTTTTGCATCAATGTACCACCGCCAAGGCGCGGTCCCACCAGGATTCCCAAACAGGGAttttcctccatccctcctccacctccatcATCAGTTTGCCCCACCTAACCTGGACTGCTCGCCAATCAGCATGCTGAATCACAGCGGTGTCGGCGCCTTCAGGCCCTTCGCCTCCCCTCCGGAAGATCGCGACGGAGTGCCAGGCGGGTATCAGTCTGCTTTCACCCCAGCCAAGCGCCTCAAAGGCTGCCTGGATGCAGATGCTTCACCCCACCTGCGCTACTCCGATGCAGAGGGGAAAGAGTACGACTTTGGCGGTTCCCAGATCCCTCCCGGAGGTTCGCCCAGCAGCGCCTTGAAAGCAGTAGAGGACAGCGGGAAAAAGATCTTCGCTGTGTCAGGCCTCCTGTCTGATCGAGAGACTTCCTCCAGCCCAGAGGACCGCATTGAGCGCTGGCTGAGTCAGGCTGTCTATTTCAAACTTGCTGATGCCCCTCTTTGCCAACTGACGCGGCACGTACCTGTCGTGATGAGGCCCCTTTGGGATGGAAATGATTGCCAACAGGCCTCACACCCACACCTCTCCGTCAGATATCCCCCCTCCTCCGGACAGCTGAGGAAGGAGAAATGGAATACAGACAGtcagcagagagaggagaagagagagggcaTAGGTAAAAAGAAGATGTCCCTGTATGACAGCCAGGCTCCAATCTGTCCCATCTGCCAGGTGCTGCTCAGGCCCGGAGAGCTACAGGAGCACatggagacagagatagagaggctAGCTGCCATATGCTTCAGTAAGAACACTTCACCCAAGGATGGAGCAGCCACTCCAGGAACCCCGAAGtcaATGCTGTTGTCGGTGCACATCAAGCGTGAGGGAGAGTCTCCAGTGGTCTCGCCCCTGTCCTCTGAAGACGCCCACCACTCCGACAGATACCAgACATTTTTACGAGTTCGAGCAAACAGGCAAACAAGATTGAATGGTGCCAGCATCTGGAGGCAACATTTGTCTAGAGTGGCCGCGATCAGCTCCGGGGGCCACATTGCAGCCGGAACGCGGCGCAGCTGCGCCCGTCTCTGCAGCAAAAGCTTGACCGGAGAGGCCAGAGATCAAACACGTATAGggaagatgaagaggaggaagccTGAGGAGGGGGGCCAGcgtgAGGGTGCATTAGGCGATGATGACTCTGCAGACATGGACGGAGAAAATGGGCGGGGCTTTGAGGAGTACGAGTGGGCGGGGCAGAAGAGGATCAGAGCTACTGCTTTGCTGGAGGGAGGCTTCAGAGGAACAGGTTTTGCAACGTGTAGCATTAAGGAGAGCGCGGCAGACAGCGACGCTGACCTAGACGTGGACGGGGACGACACCTTGGAGTACGGCAAGGCCCAGTACACCGAGGCCGATATCATCCCCTGCTCTGGAGCCGGAGAGGACCAAGGAGAGGCCAGGGAGAGGGAGGCGCTACGGGGAGCCGTGCTCAACGGTGGGATGCCTTCTAACAGAATAACGCCCGAATTCTCCAAATGGGCCAGTGACGagaTGCCTTCGACGAGCAACGGAGAAAGCAGCAAGACAGACCCCGGCACTCCTTCATCCTCCACCTCTTCCTCCTGCGCACCACGCACCTGTAAAAACAGCGAGATTGAAAAGGTAACGGAGGAGGAGTCCACGGCTACCACCATGGAGGCTCTGAAGGCTCGAATCAGAGAGCTGGAGAGGCAGATACTGAGAGGAGACCGATACAAGTGTCTCATCTGCATGAGGAAGCCTGCTATCCCGTCAGGCACGGAGATCAAGAGCCTAGGGGTGTGGCCAGGGCCCCGGCCACTGGCCAATGAGGTCGGAGAGAGGAAGCCTAAGTCCCTCCCCCTCGGCCTGTACTGCCTGTACAGGGGCCTTGTGATTGGTGGCTACGGCAGCGGCATAAAGAGGCTCCTCCCACAGCCCTTACGGAGGGTTGCCGGTTCAGTTGCCCCCCATGCTGCCTTGCTCAGTGGTTCTGTGGCTGCTGGCTGTGTCGTTCCATGGACTCCTACACGATGCCGCTCACCTCCATCCAGTGCTGGCACGTCCATTGTGAAGAATGCTGGCTCAGGACTCTGGGGAACAAGAAGCTGTGCCCGCAGTGCAACACCATCACCTCACCCGGAGATCTGAGGCGCGTCTACTTGTAAAGAGCACACCCATCCTCCCGCGCGTTCGTCCTTCCGATCCATTCCTCCTCTCATCTTGGATTTCATCGCCCTCCCCGTCGATCCTCATTTGTTTTTCCCTCTCTCGTGGCCTGAGTCGCCAGCTCCAAACCCTCCAAGAGCGTACAGAGACAAGACGGCTGTCTTTGAGACTCCACTGGCTCTTTCAGGAGGTTAAAACTGGATGAAATGGAATGACTGAGCAGAACTCACTGACTCCATGGCTGACTGCGTggctacccacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153239 lncRNA upstream 76 11708374 ~ 11722041 (+) True G113681
XR_005640798.1 lncRNA upstream 27867 11582904 ~ 11694250 (+) True LOC120568871
TU153240 lncRNA upstream 137481 11584436 ~ 11584636 (+) True G113682
TU153157 lncRNA upstream 142647 11526011 ~ 11579470 (+) True G113621
TU153155 lncRNA upstream 196867 11524978 ~ 11525250 (+) True G113620
XR_005640659.1 lncRNA downstream 4219 11878713 ~ 11954877 (+) True LOC120568095
TU153254 lncRNA downstream 69405 11943899 ~ 11944356 (+) True G113696
TU153255 lncRNA downstream 80792 11955286 ~ 11955546 (+) True G113697
TU153314 lncRNA downstream 248175 12122669 ~ 12123630 (+) False abhd4
TU153335 lncRNA downstream 270074 12144568 ~ 12152157 (+) True G113763
XM_039817009.1 mRNA upstream 181855 11538054 ~ 11540262 (+) True tmem53
XM_039815500.1 mRNA upstream 184930 11530838 ~ 11537187 (+) True toe1
XM_039815054.1 mRNA upstream 345535 11365369 ~ 11376582 (+) True urod
XM_039816745.1 mRNA upstream 357421 11346445 ~ 11364696 (+) True lyn
XM_039816833.1 mRNA upstream 377580 11332568 ~ 11344537 (+) False pkia
XM_039815318.1 mRNA downstream 89484 11963978 ~ 11966608 (+) True klf17
XM_039815553.1 mRNA downstream 106645 11981139 ~ 12062243 (+) True slc6a9
XM_039815552.1 mRNA downstream 134797 12009291 ~ 12062243 (+) False slc6a9
XM_039814521.1 mRNA downstream 200482 12074976 ~ 12089561 (+) False lrrc24
XM_039814522.1 mRNA downstream 200500 12074994 ~ 12089561 (+) False lrrc24
TU153118 other upstream 378426 11332597 ~ 11343691 (+) False pkia
unassigned_transcript_556 other upstream 835639 10885600 ~ 10886478 (+) True LOC120568835
TU153003 other upstream 835935 10885595 ~ 10886182 (+) False LOC120568835
unassigned_transcript_555 other upstream 2179987 9542059 ~ 9542130 (+) True trnaq-cug_12
unassigned_transcript_554 other upstream 2180905 9541141 ~ 9541212 (+) True trnaq-cug_11
TU153339 other downstream 282957 12157451 ~ 12160255 (+) False LOC120568189
TU153340 other downstream 283022 12157516 ~ 12160255 (+) False LOC120568189
TU153451 other downstream 708148 12582642 ~ 12587163 (+) False ap1g2
TU153727 other downstream 1054721 12929215 ~ 12975637 (+) True G113979
TU153737 other downstream 1078086 12952580 ~ 12957356 (+) False LOC120569010

Expression Profile