RNA id: XM_039815320.1


Basic Information

Item Value
RNA id XM_039815320.1
length 1724
RNA type mRNA
GC content 0.55
exon number 12
gene id nadkb
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 18609213 ~ 18625177 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAACAAATCGCGAATAATCATACAGCTCGCATCCGTGGACGTAATGTATTAATGTTTACTCCGTTTGCGTACGCGCTCTTCTTCGCCCTCCATTGTCTAGCACACACGAGCAGACGATGTGCAACAGCGCCCTCTGCGGTCACACTTCCTGATGGGTCACAGCTTACGGTGTAACACCGGTCCTGCGCCGAGATCAGACCGCAGtgaaccatggatgtattaagagaacagtgaACCCATGGATAATGGAGAACTCAAAGACCAGTCTGTCATCGGAGCCCCTGGGAGTGCAGGATATGGTGCGACCCTCAGCGCCCCCCGGTGAGCTGTCCGAGTCAGCCAGGCCCTCCAAACCCCGAGAGCACCCACCCAAGTCACCAAGGAGACGGCGTAAAGGGACGAGGTCGCAGCGACGGGGGGGTGATCATGAACAGCTGCACTGGGAAGTCGAGCGGCAGAGGTTGCCAGGCCAACACGAGCACTTGGAGCCCTCTGGCTCAACGAGCGACACAGCGGAAAGCTCTCCTAAGAGGAGAGCCCACTTTCTACATGGACCTTATCCAGCCACTCACTTCGGACCCAAAGCCTGTATTCTTCCCAACCCAACTTCAGTCATGCATATCCAGGACCCAGCCAGCCAGCGGCTCACCTGGAATAAACCACCTGTCAACGTGCTTGTCATCAGGAAAATCCGAGATGAAAGCCTCGTCGAGCCTTTCAAAGAGATCTGCAGGTTTCTAGTGGAGGAGAAGCAGATGATGGTGTACGTGGAACGCCGGGTTGCAGATGATGCTACGCTGTCAAAGGACGAGGCGTTTGGCTCCATCCGCAATCAGCTCTGCACTTTCCGAGAGGGTTATGATGATATCTCTGACTGCATAGACCTGATCATCTGTCTGGGTGGAGATGGGACTCTGCTCTACGCCTCCTCTCTCTTCCAGGGCAGCGTCCCTCCGGTTATGGCGTTTCACCTCGGCTCTCTGGGTTTCTTGACGCCCTTCAAATTTGAGTCATACAAGACCGAAGTGGCCAAAGTGTTTGAAGGCAATGCAGCCATCACTCTGCGCAGTCGTCTTAAGGTGAAGGTGGTGAAGGACATGCTTCAGAGAACAGGCCAGGAGTCGTACAGCAGAGAgccacagcagctgcagcaggaaCACAACGGACTCCTTCCTCATGGACACACCAACAGCGAGGCCGGCAAGGTCACCCTGCAGCTACAGgtgtTGAATGAGGTGGTGGTGGACCGAGGCCCATCCTCCTACCTGTCCAATGTGGACTTGTACCTCGATGGACGGCTCATCACCTCAGTGCAGGGAGACGGTGTCATTGTGTCCACACCTACAGGCAGCACAGCATATGCAGCTGCAGCAGGAGCCTCCATGATCCACCCCAATGTACCCGCCATCATGGTCACACCCATCTGCCCCCACTCGCTCTCCTTCAGGCCCATCGTGGTCCCTGCTGGGGTGGAGCTAATGATCACCTTGTCCCCTGATGCCAGGAACACGGCCTGGGTGTCCTTTGATGGCAGGAAAAGACAGGAGATCCAGCATGGAGACTGCATCAAGATTACTACATCTTGTTACCCAGTGCCCTCTATCTGTTGCCATGACCTGGTGTATGACTGGTTTGAAAGCCTGGCTCAGTGTTTGCACTGGAACGTACGCAAGAGGCAAGAGCGGCTGGCGGACATCTCGGACTCGTCAGACACCGAAAACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156184 lncRNA upstream 6953 18600758 ~ 18602260 (+) False skila
TU156146 lncRNA upstream 119027 18488531 ~ 18490186 (+) True G115793
XR_005640622.1 lncRNA upstream 143763 18458181 ~ 18465450 (+) False LOC120567854
TU156137 lncRNA upstream 143787 18458240 ~ 18465426 (+) True LOC120567854
TU156136 lncRNA upstream 143852 18458240 ~ 18465361 (+) False LOC120567854
TU156191 lncRNA downstream 8141 18632716 ~ 18646383 (+) True G115826
TU156224 lncRNA downstream 24199 18648774 ~ 18649804 (+) True G115856
TU156234 lncRNA downstream 59139 18683714 ~ 18684253 (+) False G115862
TU156236 lncRNA downstream 59139 18683714 ~ 18684465 (+) True G115862
XR_005640744.1 lncRNA downstream 65059 18689634 ~ 18692121 (+) True LOC120568663
XM_039815518.1 mRNA upstream 6950 18566633 ~ 18602263 (+) True skila
XM_039816544.1 mRNA upstream 52853 18521969 ~ 18556360 (+) True prkci
XM_039814934.1 mRNA upstream 103546 18496691 ~ 18505667 (+) True dapk3
XM_039814931.1 mRNA upstream 129492 18466050 ~ 18479721 (+) True arhgef18a
XM_039815220.1 mRNA upstream 155248 18394984 ~ 18453965 (+) True insra
XM_039816360.1 mRNA downstream 35854 18660429 ~ 18674140 (+) True LOC120568691
XM_039816349.1 mRNA downstream 56025 18680600 ~ 18682419 (+) True LOC120568684
XM_039816350.1 mRNA downstream 56070 18680645 ~ 18682419 (+) False LOC120568684
XM_039816358.1 mRNA downstream 74907 18699482 ~ 18701227 (+) True LOC120568690
XM_039816359.1 mRNA downstream 74952 18699527 ~ 18701227 (+) False LOC120568690
TU156065 other upstream 254869 18305149 ~ 18354344 (+) True G115729
TU155940 other upstream 579318 18027280 ~ 18029895 (+) True LOC120567767
TU155758 other upstream 1168750 17407491 ~ 17440463 (+) False LOC120568596
XR_005640725.1 other upstream 2082784 16439025 ~ 16526429 (+) False LOC120568419
TU156233 other downstream 47987 18672562 ~ 18674062 (+) False LOC120568691
TU156400 other downstream 392483 19017058 ~ 19018726 (+) False LOC120568770
unassigned_transcript_559 other downstream 892278 19516853 ~ 19516945 (+) True trnar-ucu_13
XR_005640618.1 other downstream 1748660 20373235 ~ 20375633 (+) True LOC120567833
TU157037 other downstream 2258131 20882706 ~ 20915288 (+) False LOC120568904

Expression Profile