RNA id: XM_039815327.1


Basic Information

Item Value
RNA id XM_039815327.1
length 3878
RNA type mRNA
GC content 0.43
exon number 8
gene id sec62
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 18628974 ~ 18646415 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGCAGCCTCGCGCCCGTCAGAGAAGCTGAGTTGGGGGATCATGGCGGAGCGCAGGAGGCACAAGAAACGGATCCAGGAGGTGAGCGAGCCCACCAAGGAGGAGAAGGCGGTGGCCAAGTACCTCCGATTCAACTGCCCAACCAAGTCCACCAACATGATGGGCCACAGAGTCGACTATTTTATTGCCTCCAAGGCAGTGGACTGTCTGATGGACTCCAAGTGGGCCAAGGCCAAGAAGGGAGAGGAGGCGCTGTTCACCACCAGGGAGTCTGTGTTGGATTACTGCAACAGACTCCTAAAGAAGCAATTCTTCCACCGGGCTCTCAAAGTGATGAAGAAAAAGCCTGAGAAAGACAccaagaaagagaaggagaaagagaaagagaaggagaaagataAGGATAAAGAGAAGACCAAGGGGGACAGCagcaaagaggaggagagaaaagggaagaaggagaaagagaagaagaaagagtcTGAGGCTGTTGAAACCAAGAAAGAGAAGAACGATGACAGTCCTGGAACCcccaagaagaagaaagaggtgaAGAAGAAGTTTAAACTGGAGCCTCATGAGGATCAGCTGTTTCTAGATGGAAATGAGgTGTATGTGTGGATTTACGATCCTGTTCATTTTAAGACATTTGCCATGGGACTGATACTCGTCATTGCTGTGATAGCAGCCACACTGTTCCCCCTGTGGCCAGCAGAAATGCGTGTAGGAGTTTACTATCTAAGTGTTGCGGCAGGCTGCTTTGTAGCCAGTATATTGCTTCTTGCTGTtgCCCGCTGCATCCTCTTCCTGATCATCTGGCTGGTGACTGGTGGGCGCCACCATTTCTGGTTCCTCCCCAACTTGACTGCAGATGTCGGTTTCATCGACTCGTTCCGGCCACTCTACACCCACGAGTACAAAGGACCACGAGCCAGCAATAAGAAGGGCTCCGACAAGACGGACGAGAAGGACAACGATGGCAACAAGGCTCAGAAGTCAGACAGCGATGACAAATCAGACAGCGAGAAGAAGGACGgcgatgaggaagaggaagaggaggaggaggaggagggcaaaGAGGCCGAGGAGAGTAAAGAAGCAGAGGGGGAGGGAACGGGGGCGGACCGCcactcagacacagacagcGACCGCCGGGAGGAAGAAGGCTCGCAGCACAGCAACGGGAACGACTTTGAGATGATCACCAGGGAGGAGCTGGAGCAGCACACAGAGGAGGAAGACCAAGAGGAGGAAGACGAGGAGACGCAAGAGAGGAAAGAAGGGGTTGAGAGTGAAACTAAACCCCAGACTGCTGAAACATAAACTTCTTACAATCCCATCACTCTctactttttctctctctggcctttcctcccttcctcttgtGATCCCAGGACCTGCTATTCCAGCCTCTCTGAGCCTGCTGAGGCAGTGGAGAGGCTTCATCTCTTCTTGTTGAGATCTTCCACTAAACCGTTCCAATAGAACAGTACTGGGATAGACACAACAATGAAAAGTAAACGGCTACAACAATGGGGGGGGAAATCTAAAAGAAGCCTTATTGTGGATCTTATTCCTCCCACCCAAATGTTATTTATGTAAAAGTGAAAACTGCCACTGACATGTTTGCCTGAGGAAGTtgtcaacaaaaaaatcaaaccaACAAACAGTGCTGAtagagttttcattttttttctttttcatttgtgGTTTCTGGTTTTCATCTCAAGtttctttttgtcatttcaactcaaaatgttttatttttgtcctcTCTCTTTGGTTACATTTGGATGTGAGGTTGAAGCGAAGAAGAGCTATCATGCTTAACTGACCAGTAAGCGAAGACGTGCTGGTTTCTTGTTGGTACAGTCACATTAGCAAGAAAGCCCCCGTTCTTTCACCTTTTGTTGGTGTTTTGGTGAGACAGTCTGATAGCTTTCTCAGGCAGCCTTTGAaagccctgacacaccaacccgataatcggccatcggacagtctggcaaggtcagtgactcgagtctgttcggtgttccaaggcactttttggacttcggggagccgactgatcagtccaactgccttttctgccgacggtcggccatcgggttggtgtgtcagggccttaaagcAAAGTAACCTGCTTTGAAACCCGAACCAAGCCAGATGGACCAAATCCTGTAGTTTACTCGAAGGACCCTAAAAGTCAACCATGATATGGCTGGATGGAGTATTATGAAAGCAGAGTAGCACGGCTCCTTGAGgtacttgccattttcagtaagaaaaaaaatgtcttctttttttaaatggctgaTGATCATAGTGCAATCCTCTACACAGTCTGAAGTAGTTCATGTTTAATAATGTGGGACTCATCTTTAAGAGTAAATGTGAGCAACTGGGATACAGCTAGCATACTTCATCAAAGCTAGAAGATGCTACGTTCACTGGTTAACTGTCTATTTGCAAACAGAACCAGATATAAAGTAAACTCTAGTGCCAAACACAACTGATAATGATGTTATGCATGCTGATGTAATATGGAGAGTTGAGTGAAAGAGCGATGGGTACGTTTTTGTTCATTTCGTTAATTTTGTAACCGCAGTGTCAAACTCCTCAAAAGGTTTGCatctttgaaaaaataaattaaacaccGCACAAAGTTATAAGTTTGTAGCTAAACAAAGATTTTGGTCTCAGTGAAACCGTTTAAAGGTGTAAGCACTAGACTCCCATCCAAACCAGTTCTGTCTAGTCTGCATAAGCTGTTGTATGAAAATAGTGGTACTGGTCCACTAACCAGACCACATTTCATTTCCAATCAAAGCCCAGTAGCTGGCGGCCGTGGTCCAAACTGTTCCTTCACATTATCTTCTGGCTAGAAATGTCTTAGATGCTTTTTTTAGTCATAGCAAGGATTatatagtataaaaaaaaaatagaaatgtatCATTTATATATGGATTATATTGATATATCAACTATATAAAATAATTGCAGTCTAAAAACtataaaacaactttttccttttttattgttttaggggatataatttgtattctgcagatttttgtttttatacgATCATAAAGAGcaaatttattatttaaaggaaAAATCTGGGATTAGAAAACCGtggtaatttattaaataaacatttttctgtatttctttttttacatttgtcactGTAACAtctggttgtttttttccaacaagATTTCTCTCCCTAACACATGGTCAGTCATTAACCCAAGTTTATAAAGCCAGTGCATTGTGTAACACTGCTGGTTCCCACTTAATCTGACGTGGCAAAAACTCCTCACAGTGAAACAGTATCTTAATATACGTATTTCACACAGCTTTCTGTAGTTATTTGTTTTTCCTAAAAATGTACTCACTTAGACTGTATTTAGTCTTTTGTTCTGTCTCCTGTTATCCCACTGAGGTTTGTAACTCTTCGACTTTCACCTCCatgttgtttcttttcttatatatctggttttttttcttccccaaaCGGGCAAAGTGCATCTCTATGTCCTGAGTTGCCAGTCGCTGTACTCAATATTTGCATAACCATTTCAcaaaagagaataaaaagatTCTCCCAATTGTTCTTGACTGTTGCACAGTATCGGTTTGTTGTATAGTGTAGTATTATTACTCTCTATGCTGCTGCTTCTCATCGAACATTTATTGGGGAATTAAAAAGTGACATTGTCAAACGGGTGTCTTTTGATCACCTAGTTGTCCACATTTGGATCAATATCAGTCTGAAGACGGTTTCATGCAATATTGGAGTATAATTTAATAAAACTGGATGTCTGGAAATATATCTGTATCTTATCATTGCAATAAAAATATAGAAAGCGCA

Function

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008565 obsolete protein transporter activity molecular_function

KEGG:

id description
K12275 SEC62; translocation protein SEC62

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156218 lncRNA downstream 7754 18620833 ~ 18621220 (-) True G115851
TU156215 lncRNA downstream 13702 18614801 ~ 18615272 (-) True G115848
XR_005640793.1 lncRNA downstream 93361 18534647 ~ 18535613 (-) True LOC120568822
TU156134 lncRNA downstream 172972 18454033 ~ 18456002 (-) True G115782
TU156082 lncRNA downstream 243015 18378400 ~ 18385959 (-) True G115738
XR_005640750.1 lncRNA upstream 16426 18662841 ~ 18663776 (-) True LOC120568692
TU156242 lncRNA upstream 37191 18683606 ~ 18684244 (-) True G115867
TU156247 lncRNA upstream 42814 18689229 ~ 18691179 (-) True G115868
TU156256 lncRNA upstream 56658 18703073 ~ 18720587 (-) False LOC120568909
TU156304 lncRNA upstream 188109 18834524 ~ 18834763 (-) True G115917
XM_039816415.1 mRNA downstream 24184 18603307 ~ 18604790 (-) True gpr160
XM_039817002.1 mRNA downstream 107951 18508455 ~ 18521023 (-) False phc3
XM_039817001.1 mRNA downstream 108910 18508455 ~ 18520064 (-) False phc3
XM_039817004.1 mRNA downstream 108910 18508455 ~ 18520064 (-) False phc3
XM_039817003.1 mRNA downstream 108910 18508455 ~ 18520064 (-) False phc3
XM_039814523.1 mRNA upstream 666 18647081 ~ 18655196 (-) True samd7
XM_039816654.1 mRNA upstream 56649 18703064 ~ 18720415 (-) False LOC120568909
XM_039816656.1 mRNA upstream 56649 18703064 ~ 18720361 (-) False LOC120568909
XM_039816653.1 mRNA upstream 56649 18703064 ~ 18706049 (-) False LOC120568909
XM_039816323.1 mRNA upstream 190257 18836672 ~ 18841174 (-) False ackr4a
XR_005640621.1 other downstream 134486 18483156 ~ 18494488 (-) False sppl2
TU155671 other downstream 1520070 17039800 ~ 17108904 (-) False ly97.3
TU155672 other downstream 1583912 17043126 ~ 17045062 (-) True G115406
TU155670 other downstream 1587498 17039800 ~ 17041476 (-) True ly97.3
XR_005640632.1 other downstream 1826710 16756331 ~ 16802264 (-) False epb41l3b
TU156258 other upstream 70467 18716882 ~ 18718544 (-) True LOC120568909
TU156342 other upstream 198490 18844905 ~ 18846277 (-) True G115941
TU156358 other upstream 285559 18931974 ~ 18935477 (-) True LOC120568972
TU156517 other upstream 575376 19221791 ~ 19222726 (-) True G116084
TU156578 other upstream 818285 19464700 ~ 19465380 (-) True G116138

Expression Profile