RNA id: XM_039815340.1


Basic Information

Item Value
RNA id XM_039815340.1
length 4884
RNA type mRNA
GC content 0.45
exon number 7
gene id abhd17aa
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 27434113 ~ 27442129 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCGGATTTAGTCGAcacagtagtaaaaaaaaatctggttgCTATGAATTTCAGCTAGCTAGCCACCGACAACTGTGTAGTACACTTGAGTAAAACCATCCATGTCAAGACACAAGATAGGTTTTCGAAGTCTTGTGCCGCTTCTCTGTCCATATAGGGACACACCAGCCTGTCTGCCAACCTACTGTGAATCGATCCTGCTGGCGCAGTGACTAGACCAGAAGACCTTGGCACCGTTGTGTGCCAGTTCATTTCAAGACCCAGGGAATTTTGAATCCAGACGATGAACGGTCTGTCCATACGAGAGCTATGCTGTCTGTTCTGCTGCCCCCCTTGCCCCAGCCGCATTGCAGCCAAACTGGCTTTCCTCCCTCCAGAGCCCACCTACGCCCTTCTCCCTGACACAGATCCAAGCTCTGGAGCTGGAGCTGCTACTGGGTCCAGTTCCGGGGCTGCTCAGCCTTCTCTAGGAGCCCCAGGACTCCGTTCCCGGCAGGGCACTAGTAGtggagctgacagaggaggtggtgctggaggtgggggtggtggaggaggaggaggaggaggtggtggtggaggaggagcaggtggCAGCGGTTGGAGTGAGGGCAGGTGGAAGCTTCATCTCACAGAGAGAGCAGAGTTCCAGTATTCACAGAGAGAGCTGGATGTGACGGATGTATTCCTGACCAGATCTAGCCGAGGGAACAGGGTGGGGTGCATGTACATCCGCTGTGCCCCCAATGCTAGGTTTACAGTGTTGTTTTCCCATGGCAATGCAGTAGACCTGGGTCAGATGAGCAGCTTCTACATCGGCTTAGGCACACGCATCAACtgcaacatcttttcctatGATTACTCCGGCTATGGTGTTAGCACTGGCAAGCCCTCTGAGAAGAACCTATACGCGGACATTGATGCTGCCTGGCATGCCCTGCGTTCTCGGTATGGCATCAGCCCTGAGAATATCATCCTGTATGGACAGAGCATCGGCACGGTGCCTACAGTAGACTTGGCATCACGGTTTGAGTGTGCCGCTGTGGTCCTCCACTCACCTCTCACCTCCGGCATGAGAGTGGCTTTCCCTGACACCAAGAAAACCTACTGCTTTGATGCATTCCCtaaCATAGAGAAAGTGTCAAAGATCCCGTCTCCAGTACTGATCATCCACGGTACAGAGGACGAGGTGATCGACTTCTCTCACGGCCTCGCCCTGTTTGAGCGCTGTCCCAAGGCGGTGGAGCCCCTCTGGGTGGAGGGAGCCGGTCACAACGACATTGAGCTTTACAGTCAGTACCTGGAGAGGCTACGGCGCTTCATCAACCAGGACCTGGCTGCACAGCATGCctgagaaacaaaacaacagccTCTCTGCGGTTGTATGAATGAGACCGtgcgcgtgtgcatgtgtgtgagaccGAGTGAGAACGTCAGCATGTTTGCAAAGTATGTGTGAGAAATTGACCTAAAACAATATGTGATTTTTGTCACATCTGTGTGTCTTTGAAGCAGCACACCTTTACGTTTACTTTTCAACACAACATATGTTCGGGTAATGTCCCGTTCAAAAGGTGGGAACAGTTTTTAATATATCGGTAGCTGTATCCATCTGTATGGTGGAGTGTGGTGAAACGCTAAAAACAAGAACCTGGATTATATAACTTTACAAACCTGGTTTTTAACGTAGGGGAATTTATGAATTGCAGCTTTGACATGAATTAAGAAGTAACAACAATGTGCTTCGTTCAGAAAGGCACACAGATGTAATTTTAAAGTATGACGTGttagtgaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggcagtgctGGAAGACATGAAGGACATCCTAATGACTTGGACAGCTGCAAGTGGAGGAAGCTTATTGAGACttatcaatattattattattttttcattttttgcgTGTATGTATGAAAAATACCTCCACAGCTTGACCAGTTCTCTCTCCAGTGGACTAACACTGGTCAAGCATGTGCTCACCCCCCACACTCCTCCACCACTCCCTGTTTACCTGTTAATGGATATCCATCTGACTGCCAGGGCATTTCCCAAGTTGTCCAGCTAACACTAACCTACTTTATCTGTGTGGTTTGGGGGTCCATCTCCTTCCCTTTGGTGTCAGTTAGGGTGGATACTTAAGGACTAGTCTGGAATACTGTCATAGTTTGTATGGCTGTTGGGGGGTTCTCATACTTTCCTCTCCCTCATTTTTGACTGTAGAGACCACATAATGGCCAGCTTCCACTTTATTTCCTGGCTGTGCTGTAGCTTTAGCCTTTACCTGTCCACAGAATTGCAGCAGCAACTTACAGGGAATTCTTTTTATCTCCTTTAACACCTTTTCCCCCCATCCAGTCCTACATATTTGTGATAAAGAATGATGGTGTGTTGAACATTTCTTTGGCATTAGTAGAACAGCTAGGAGTGCAGGTTTACTTAGCAATTTCACTGTCACATTAGATCAGTTGGCTCTAAACAGAAGGCTGTAGCTCAGTATTTACTGATGTGTGACTGTTAGAGGCTGGGCAGCCTGCACTGACTCGGTAACAGCAGGGTTCAGTCAGATTTACAGGAATAGTTTGGCATTTTGGTAAATAgtcttattcactttcttgctgagagttggaTGAAAAGATGAATACCACTTTCATGCAGAAACTCCAGGAAGTGACTGCGCCCAGATAAGTAATAGTCCGGCACATAACTTTAGaagtgctggtaggtggattttgttaccttttttacagagccaggctagcggtttccagtctttacgccaagctaagctaaccagccactggctgcagcttcatatttagcgtacagacatgagagtggtatcattcttctcatctaaccctcaacaaaaaaacaacaacaaatgagtGTATTTCCTGAATGCAAAATCTACCGTTTAGTCTGAAGTGCAGCTGTCGTGGTCTGTGAATAATTGGTAGTCTCTTCTGGTGAACTTTTGGAGATTGATGTTCTCGCTGGATTTGGAGGCTCTAAAAGGTATAATGACAAAAAGTAGCTGCCGAGTTCATCGAACTAATGAGGATTGTGTCCGTTTGACTCAGAATAATCTTTTGTGTAATGCTGGTTAACTTGTAGTCTTACATCACAGATAGATTTCCCAGTCTTGCACTCATCAGCAGGGTTAGTCATCCTCCTGTTTATATGCACATTTTGTTTCTAACGTTTTTGTCCTGATGTAATTAATCCGAAACGTGTTTGTCGTAGTGTGGAGCCATGGATTGTTTGTCTCTGAACCACGCGTGTCGATGTTATGACTAACGGTGTGATTCAGATCAGGTGCCAGGACGTGGCATCATGCCTGCTATAGCTCCGTTTAACCTCTGTGGCCCTAAATGTACAGGAGCTCTCTTATGGGTGGCAGCACGCTTAATGTCTGACACAAGCCATATTAGAGCCTCTCACTATTGGTGTGGTGCAGGTTCCACCACACACACCTTTGCACATCAtcacacacgtacacaaacacacacacacacacattcaaacaacacacatgcatacacactacatacagtactgttgtatacagtatatttacacatttatatatcAGATCAAGCATGAAAAAAGCAGGTCTTAAGTTCAGCACTATTGTACAAAGCATCCAAAGTGTAATAAGGGTATAAAATGTAAGTTTGCGTGTCTTCATTATTATTAACTGTCTTCTACAGGGCAGCATTAAGGATACTAACATCACGTTTGAATAACTAGTAATAGGCCCTGTGTGTAGACCTGCAAAAGTACAAGAACTGGGTTTATGGTTGCAGGCTAGCACCACATATCAGATCTACACAAGGAGTCTGCTGCATAGGAGACTCGTCAGTTTCAGTGATAGTTGCTGCgtttttgttggtgttttttttttttttttaagggaacATGTACTGAACTAGCACTGATCTGATTACTCCATTGTGGGAGTACAAGTGGGTCTTAGGGAACACCAATCACTTCCCGTCATCATTTCGAACAGGGAATCTTTCCATTCTCATCCCGTGCTTTGCATCTCTGATATTTAAATAATGGAAATCTGTTACCATCTTGGACCGGGGTCTGAGCTGTCAGAAGAATCGGCGAATGTTCTCGCCTCTCTCTGAAAGTAGAAGTAGGCCTCAGGTTTTTTTTCCTGGACCACTGGTGTTATCAGGGAAACCACTGGATCCACCTTTCATTCATGGGGTTTAAGAAACCGGGTAGAGACTTGCCGTTGAATTGATATTGTATCCTCTGGCCCTGAATGTGTAttgatgggggtggggggggtttgAACAGTGAAAACTGTATGCATGTCTATTGTGTTTTGCAGAGCAAGTGGCGGGGTGGGACGTTATCTCTATTATGTATTCTATGTGAGGGTAAAGCTGAACTCATGGCATTGGAACATTGAagcgctttaaaaaaaaaaaaaaaaatacaaaaaaacccgggacttttatttgaattttttattGCTGATACTAACTGATGTATTGTTATGAGTTTTGTGCTAGAGTTTGAGCGGGGGCAGCGGTAGGTGGGTGGGCGGGCTAGACAATATTAGTGGGCTGTTTATATGGTTACTGTACTTACCTATTCTATTTGTATTATGATTTGTAATTTTATGTTGCTTTTTTGAACTGAGAATATGATGTAATGACATTAATTCAAGGGACTGAATCTTGACCTTTttatggaaaacaaaataaaaaaagatcacTTATGTACAAAAA

Function

GO: NA

KEGG:

id description
K01076 ABHD17; abhydrolase domain-containing protein 17

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159611 lncRNA upstream 34717 27399054 ~ 27399396 (+) False gpr35b
TU159604 lncRNA upstream 46157 27386896 ~ 27387956 (+) True G118420
TU159593 lncRNA upstream 67552 27363578 ~ 27366561 (+) True G118409
TU159464 lncRNA upstream 172758 27258374 ~ 27261355 (+) True G118306
TU159428 lncRNA upstream 178764 27252543 ~ 27255349 (+) False G118280
TU159690 lncRNA downstream 167969 27610098 ~ 27610325 (+) True G118488
TU159727 lncRNA downstream 246883 27689012 ~ 27690687 (+) True G118514
TU159731 lncRNA downstream 262041 27704170 ~ 27705071 (+) False LOC120568664
TU159760 lncRNA downstream 502122 27944251 ~ 28042190 (+) True G118537
TU159779 lncRNA downstream 594332 28036461 ~ 28037330 (+) True G118549
XM_039815328.1 mRNA upstream 35053 27394523 ~ 27399060 (+) True gpr35b
XM_039815152.1 mRNA upstream 105262 27318329 ~ 27328851 (+) True cactin
XM_039814722.1 mRNA upstream 142578 27286920 ~ 27291535 (+) True LOC120567742
XM_039814861.1 mRNA upstream 152783 27272212 ~ 27281330 (+) False LOC120567815
XM_039816560.1 mRNA downstream 159871 27602000 ~ 27609692 (+) True LOC120568838
XM_039816272.1 mRNA downstream 169946 27612075 ~ 27632981 (+) True LOC120568637
XM_039816274.1 mRNA downstream 169946 27612075 ~ 27632981 (+) False LOC120568637
XM_039816275.1 mRNA downstream 169946 27612075 ~ 27632981 (+) False LOC120568637
XM_039816276.1 mRNA downstream 169946 27612075 ~ 27632981 (+) False LOC120568637
TU159378 other upstream 548083 26883559 ~ 26886030 (+) True G118234
TU159241 other upstream 664202 26765492 ~ 26769911 (+) True G118149
TU159178 other upstream 834041 26590830 ~ 26600072 (+) True prkab2
TU159113 other upstream 1016105 26416508 ~ 26418008 (+) True ccl20a.3
TU159071 other upstream 1032035 26399420 ~ 26402078 (+) False G118011
TU159680 other downstream 159895 27602024 ~ 27609718 (+) False LOC120568838
TU159791 other downstream 714844 28156973 ~ 28159589 (+) False LOC120568082
TU160295 other downstream 2526284 29968413 ~ 29969850 (+) False LOC120567689
TU160411 other downstream 3127266 30569395 ~ 30574881 (+) False LOC120568595
TU160502 other downstream 3729088 31171217 ~ 31196233 (+) True G119114

Expression Profile