RNA id: XM_039815352.1


Basic Information

Item Value
RNA id XM_039815352.1
length 8842
RNA type mRNA
GC content 0.49
exon number 24
gene id LOC120568106
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 22739634 ~ 22757614 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAAACACAAGCAAGGTGTGGTTTCTGTCCAAAAGCGGTCAGCTTCCGTCTATTCACAGCAAACCATTATCTGCGCAACAAGAGACGGTGAGGGGAGAGGTGCGCGGTCTGTCCTCTGTCTGTACAGCAGAGAAAAACGACTCAAACTTCAATACTTTcttcaaacataaaaaacaacaacaacaacaacaactcggCAAACATGAGTTTGTACGGCTCGAACCCAAGATTGGTCACCGGGGTCCAGAGAAGTAATTCGCGACAAGATTTGTCAGGTCGAAACGACGTGTTCGTCGGTGGAAACGGCTTCCAGGGAGATTACCAAGGACAGGGCACCACCTACACCTCCTTCTCCAGGACCTCCATGCACGGCGGGGGGGCAGCGAAAGCACAAGTCCTCGGCACGGCGGGCGGAGGTGGTGGAATGAATGTCCTGGCAATTCAGCAAAAAGCTTTGTTCCTGACAAGCCAGTGCCAGGATTTCCTGGAGAGAGCGAATATGATATTCCAGGGTGGGGGTCCAGCCATGGAGGTAGACAAACTGTTGATCATGGCTGCAGAAACCATGGAGCAGATGAAGGCCTATGGCAGAGAGCTGCAGCAAATGCGTATACCTAACAACATCTTCAGGagCTTAGAACAGTTCCAGCACATGCATGGTGCTTTGCAACAGCAATTAGTCAGTAGTGTGACCATACGACGGAACAGAGGCAGCGTGGGTTCCCTTGAGGGGGGGAGGATCTTTAATGATGCCATGGCCTGGATTGCCCAACAGAAGCGCATGATTGAGACAACTCCATGGGGAGATGACTCCGAAACCATAGAAAAGCAAATCATAACCCAAAACAAAAACCACAGCTCTATCCAGAGGAGCCAAGAAGTAGACCGTGCCAGAGATGAACTGAGGGGCGACAAGTACAACCTTTCCATCCTGGAACAAGAATGGGAAAGCTTACAGAAAATGTCCCACAGCCGTGTGGGTCAGCTGCGAGACCTTCAGGGCATCATCGGGGAGATCTCCCAAGCCATCATGTGGGtgaatgagagagaggaggaagagcttATGTTTGACTGGGGAGACAAGAACATCGACCAGTATATCCCTAGGAAGCAAGAGAGCTACTCAGGGCTGATGAGGGAcctggaggagaaagagaaggagctAAACAAGCTCAAAGTGAAAGCAGATGGACTTGTGAACAACAACCACCCTGCCTCAGATAAGATTGAAGCCTACATGGACACCTTACAGACCCAGTGGAGCTGGCTGCTGCAGATCACCAAGTGTATCCATGTTCATTTGAAGGAGAATGCTGCCTACAGCCAATTTTTCAAGGAGGCCAATGAGACATATGCGAAGCTGCAAAAGGAGTGTGAGGCTATCCGAAACAAGTACATGTGCGACAAGAACACCCAACTGGATAACCTCAATGAACTCCTGAAAAACCTAGAGAAAGAGAAGGCGCGAGTCATGGAGAATAAGAGGCAGGTCCAAAGTCTGGTCAACAAATCTAAGACCATTGTCAGGCTGAAACCTCGCAACCCTGAGGAGAAGAGCAGCAGCCGTGTCATTGTACAGGCCTTATGTGACTTTAAACAAGACCAGATAGGGATTTTAAAAGGGAATGAGGGCATCCTGAAGGATAACTCGCAGCGCAGCAAGTGGCTTGTGACGGGACCTGGAGGTCTGGACATGTTGATTCCCTCTGTGTGTCTGCTGATCCCCCCACCAAACCCGCTCAGCATCGGCCTCGCCGACAAGAATGAGCAGTATTATGAAGCCATCATGAGCATCTGGAATCAGCTCTACATCAACATCAAGAGTCTCATCTCATGGCAATACTGCCTCAAAGACGTGAATTACATCAACTCGCTCACTGTCAGCATGCTGTCTAAAATGCGTCCCGACGAGTACCGCAATATCATCAAAAGACTGGAGACTCACTACCAAGAGTTCATGCGTACCAGCCAAGGTTCTGAGCTGTTtggagaagaggagaagaaaaccATGCAGGGCCACTTTGATAAAGCCCAAACCTACTATGATACACTGATTATCCAGCTGCCTGCTTACAAGGAGGAAGCGGTAAAGCCTGACAATACCAAGCCTCCGACTCCAAAGATCCCCAAGCCCCCTGTCGTCCCAGTCCCTGTCCAGCCTCCCCCAGCCAGTTCTACCATCAGCCTTACCCTGCTCAACAGTCTGCAAGAACTTCGACGCAGGCTGGAGCTGGCTGAGTCCGGTCTCACCAGTCATCTACACGTTCCCCTGGGGGACAACAGTGTGCACGAGTGCTCAGTGCACATCCAGAAGCTGCAGACTGTGCACCAAGACTTGGACTCCATTCATGATGAGTACCTGCGACTAAGAGAAAAGATTATAAAGCAGCTGGAGGGGATACCTGCAGACTCCGAGCATGCCCAGTTCCTCCGCTCTGAACTAGAAATCATCAACCAAAAACTGAGAGGCCTGCAGGGTCTCTACCCAGCCTACCTTCAAAGGCTGTCGGCTCTTAAGGCCTTGCTCCAGAGCCTTCTCCAGGCTGAAGATatcattaaagtcaatgaggccCGGCTGACAGAGAAGGAGACCACCTCTCTGGACCTTCGAGAGGTGGAAAAATATCGGAGCACACTAAAGCAAATGAAGAGTGATCTGGAGCAAAAAAGAGACCTGCTGACAGCCATGGAGTCTGACCTGGCTAAAGCAGTGCACTGGAATGGCCAAATCTCCGCGCCCTTCCACAAGTGTGACGTGGACTTGTCCAAGTACTCAGACCTGGTGGGTCAGATGTCTGACCGCTGGCGCCGCATCCAAACCCAGATTGACAGCAGAGTGTGGGACTTGGAGAAGCAGGAAAAACAGCTGACTCATTATCAGCAGAGCAGCACTCAGCTGAAACAGTGGATAGACAATGCCAGGAAGCGCCAGGACACCCTTCAGACGGTTAAGCTCAGCGACATCCAGACTCTAATGGACCACCTCAACCAACAGAAGGCACTTCACACTGAAATTaaaggaaagaaggagaaaGTAGAGGTTGTGCAGAAAAACGCAGACATCTGTGCTTCCTCCATAAAGGACTATGAGCTGCAGCTGGCTTCCTACGGTTCAGGCCTGGAAACTCTGCTTAATATTCCTATCAAGAGAACAATGCTGCAGTCTCCCGCTTCTGTGGTCAGACAAGAGGCGGCTGACCTCCAGTCCCACTACATAGAGCTACTCACCCGCTCTAGTGACTACTACAAGTTCCTTGGGGAGCTACTGAAGAACATGGAAGAGCTAAAGATCAGGAACACTAAGATCGAGATGTTGGAGGAGGAACTAAAGCGTCTGAAGGACGACATCCAGGACCGTAACCAGAAAAACAAGTCTCTCGAGGATGCTTTGGCCCGCTGCAAGCTGGACCTCACTCAGTCACAAGAAAAGCTCATTTCTATGGAGGAAGTGAAGAGAACCACAGCAATACAAGTTAGCGTTACCAAGGAGAGCCTGGACAGCACACACAACCAGCTTCAAGATCTCAACGACCAGCTGACCCGCATTAAATACCAGCTGGatgaagaaaagaggaaaagaatgTTGGCAGAGGAACGCTACACCAGCCAGCAGGAAGAGTATGAGGCGGCTCTTCGCCGCAGACAGAAAGAACAGGACGAATTCAACTGGACCAAAATTGACTTGGAAAAGTCTGTGAAGGACAAGGACCATGAACTGGAGAGGATGAAGATACTGCTAGACGAGGAAGCGACTCGTCGACGAAACGCTGAGTCAGAAATCTCAAAGGTAAGAACACAGTGCACCCAGGAGATTAATCAGCTTAAGCAGACATATGAGACACAGATCCACGTTACCAAGACCACGATCCTAAAAGCCTCACAGCAGAAAGAAGAAGACACAGCAGAACTGAGACATCAAGTTGACAGACTCACTGCCGAGAAGAGAGATCTAGAGGAGGAGCTGCGGAGACTGAGGCAGTCCATTGCTCACACAGAAGAGCAGaaaagcagagcagagcaggagGCCAGCCAGCAGAGGGCCTCAGTGGTACAAGAAACGAGGCTTCGCAGCGAGTTGGAGATTCAGCTGAGAACACTCATGCAGCAGGGAGGACAGGATGAGCTCAAACTGAAGGAGGCCATCAAAACCAATCAGGAGAAGTCCAGGCagatcagcatgctaacatttaacctggaggaggaggggaagaagaggagagctCTAGAATTGGAAATCAATCACCTGAAACAGGCTGAGGCAGACCTGAAGGCAAAGAACACCTCCTATCTGGAGTCCATTAACAAGCTTAAAGTGTACGAGCAGGAGATCAGCATCACCCGAGTAGAGCTGGAGAAGCAGACCAGTGAGAAATCCCAGGCTGAGCAGAGTTCTGTCAGGCTGCAGAGCCGTATCCGAGAACTTCAGTGCTCTCTGGATGGAATGGAAGCAGAGTTGGAGAAGCAAAAGAAGACGACCCAGGAGGAGTTCACACGTAGAAAGAGAATGGAGGCAGAGTTGGAGAGGATGACACATACTTGCAGAGAGCACACCACCACAATTAGCTCACTGAAGTCTATCCAGCTAGAGACTTCCAACTATGGAAGGAAGTATGAGCAGGACATAAGTGCCCTCCAGGAGGCTCTGGACAAGAGTCTGAAGGAGCATAAAGTCACCAAGCAAGAACTGGCAGCTGTCACAGCTGAGCTGAGGACACTTAAACAGAAACTCCAGCAGGAACAGGCTCGGACTCATGAGCTCAACCAACGCAATGAGAGCCTGTATAAGACCATTGAGGAGAAGAGCCGCCAGCTTAACGAATACACTACCGAGATCGAAAAGCTGAAGACTCTGACACAGAACCTGACCAAGGAGAGACTGAGGTTGGAGGAGGAGCTGAGGACAGTTagacaggagagagatgagCTAAAGCTTAGCAAAGCCACTATTGATGGAGAGAGTGCCACTCAGATCTCAGCCTTGCATGTCCAGCTTCAGAGTAGCACCAAGAAGACAGCCGAGCTCCAGGCTCTCATCAATGGCCTGAccaaggagagagaaaagcttAAATTGGAAACAGACAAATTCCAAAAGCAATCAATCGAGACATCCATGATGGTACATGAATCCCAAAGCCAATACagtgagctgctgctgcagagggACAGTTTGCTATCTAAGCTTAAACTGCTGGAGCAGGACAAGACTCGTCAGCAGCGCATAGAAGAGGAGCTCACCCGCATCAAGCTCACACTAGAGACTGAGCTCCGCAACAAACAGCGGCTGCATGATGAAAAGAATGCTGTCCTCAAGGATTTCAACTACATGAAGAGCCAGTACGAGCTGAGAGACAGCCAGATTCGGCAGTTTGAATCAGACAGAGACAAGGCTGAACGAGACAGGCTCTCCCTGAAGAATGAAATTGAGAGGCTCATGAGGGAGCTAAAGAGTGTAGAGGAGAGGTTCAAGAGCCGTCTGTTGATCTCTGAAAAGGAGGCATCAGAACTGGCTCTCAAGAGAGATGCcctggagagagagatacacagGCTGCAGCAGAGACCCAGCGCTCAGGCCAAGCAGACCCAGACAGATGAGAAGGTCCCAACAATCGATCCATCCAAGCTGATATTTGATGGGGTGCGCCGCAAAGTCACAGCCCACCAGCTTTGTGACTGTGATATAATCAGTAAAGCCACGCTAGACCAGCTCCTTAAGGGAAAAAAGAGCGTGGATGAGGTAGCTGTGGACATCCAGCTCAATCTTAAGGGTACTGGCATAATTGCTGGCATGACATCCACTTCTCAAGGGAGAATGCCCTTCACTAAAGCAAAAAACAAGAAACTCCTCAGCCCGGAGAGTGCCCTAATGCTCCTGGAAGCTCAAGCTGCAACAGGCTACATAGTGGACCCTGCATTTAATGAAAAGATGCCTGTGGATACTGCCTGCTCAAGAGGGATTGTAGACACAGAAGACAGAGACACCTTGGCAACAGCTGAAGCAGCTAGCACAGGCTTCAAAGATCCATACACTGGCAAAGTGTTATCTGTAGGCCAGGCTTGCAAACAGGGCCGCGTAGACAAAGTCACAGCCATCCGCTTGCTCCAGGCTCAGGAGTCTGTTGGAGGCATATTAGACCCTGTTCTGAGTGTGTTCCTTCCAATAGATCTGGCTTTGGATCGCAATCTTATTGATGAGGAGCTCTACAGGGCTTTGGCCAAAAATCCCACCTGCTACCTGGAGCCAGCGACAGGACAGAAGATAAGCTATAAAGACTTAAGGAAAAAGTGTATAGTGGAACCTGTTTCTGGCTTGCTTCTGCTCCAGGGTCCAGAAAAGCCCATGACAGTAAAGGGTCTCCGTGGTGAAGTCTCTGTTACAGACCTTGTCGACTCTGAACTGCTGGATGAAACTGATTTGGTGAAGCTCAAAGAGGGCAAGCTCACCAGCAGAGACATTGAAGACAAGCTAAAGTCTTATCTCTATGGCTCTACCTGCATTGCAGGGATCTATGATGAGGCCAATGACCGAATTATGCCTTTGTATCAGGCAATGAAGGAAGGCCTGCTCATGAGAGGAACCACCCTGGAGCTTCTTGAGGCCCAAGCTGCTTCTGGTTTTATTGTTGATCCAGTCAACAATGTGTTTTTGACAGTAGAGGAGGCCTCAAAGAGAGGCCTGGTAGGAAAAGAGTTCAAGAGTAAGCTGCTGTCTGCAGAGAAGGCAGTAACTGGATACAAAGACCCATCTACAGGAATGACAATCTCCCTCTTCCAGGCTATTGAGAAAGACCTTATTGAGAAAGGTCATGGAATCCGTCTTCTTGAGGCCCAAATTGCCAGCGGTGGGATTATTGACCCCAAAGAGAGCCACCGTATTGATGTTGCTGTTGCCTATAAAAGGGGATACTTTGATAAGGAGATGAATGAGATCCTAACTTATGAAGGAGATGATACAAAAGGGTTCTTTGACCCTAATACTAAGGAAAACCTGACATACCTTCAACTTAAAGACAGGTGCATAACAGATCGCAAAACAGGCCTAATACTCCTGCCACTCAAAGATAAGAGTAAGCCCCAGAAGTCACAGGAGAGCCGTACCAATATCCTGCGCAAGAGGCGAGTTGTGATCGTTGACCCTGACACTGGGCTGGAGATGTCAGTGAGGGAGGCCTATCACCGGGAGCTAATTGACTATGACACTTTCCTGGAGTTGTCGGAGCAGGAGTGCGAGTGGGAGGAAATAACTATCAAGGGGTCTGATGGCTCTGCACGTTTGGTGATAGTGGATCGGAAAACAGGAACCCAGTATGATATCCAGGACTGCCTGGACCGCGGTGTCATTGACCAGAAGTCTTTGGATCAGTATCGCAGCGGAAAGCTAACCTTGACCCAGATTGCTGACCAAATAACCAGCAGAACCAGCAGCACAGAGATGACCATTGCAAACATCAACGTTGATGACATGGTCACCTGCAGCAGTCCCACCCAGGGCAGACCATCTTCTCCGACCGTCCGTAAACGCTTCAACAGTATTTCAATCACTGTTTCTCCCCCTGACATGTTCGATGACCATAGCCCTGTGGCAGCTATATTTGACACCGAGACCTTGGAGAAAATCACTGTGTCTGAAGCCCTCCGAAGAGGCATAGTTGACACTATTACAGCACAGAGGCTACTGGAGGCCCAGGCAAGCACAGGTGGTATTATCAACCCTGCCACTGGTGAGAGACTGTCACTGCAGGATGCTGTCCATCAGAGTATCATCGACGAAAGCATGAGCACTAAGCTGAAACCTGCCCAGAAAGCCTATGTTGGTTTTGAGGATGTGAAGACTAAAAGAAAGATGTCTGCAGCAGAGGCAGTGAAGGAGACATGGTTGCCCTATGAAGCTGGCCAGAGATTTTTGGAGTTTCAGTACCTGACAGGAGGCCTGATAGAGCCTGGCATTGAACGTCGCGTCACCATTGAAGAGGCTATCCGCAGAGGTTGGCTAGATGGTCAAGGGGCCCAGAAGCTTCAGGATTCACGGAATCACCAGAAGAACCTGACCTGTCCCAAGACAAAACTGAAGATCTCCTACAAGGAAGCCATGGACAGCTGCATGGTGGAAGAAAGCAAGGGTATGAAGATGCTGCAGGCCTCCTCGATGTCCACCAAGGGAATCAGCAGCCCTTACAATGTTTCTAACCCAGGGTCACGCTCTGGGTCCAGGGCTGGTTCCCTAGCCGGTTCCAGGAGTGGATCTCGTAGAGGCAGTGTGGATTACTCCTCTACTTACAGCTATAGCTTCTCCTCCAGCAGTACCAACTTCAGCTCTAACACTCTCTCTTAATACACAGCATAGAAAGAATGAAACTAGAGTAGTTATGCACAGCCTATGGCGTTTGAGTGCTTTCATAACAGTTTGCTTTTCTAAATGATTTTCTGCTACCTATGAGATTTTGGGAGGTTTGTTTAAATACTGAATCTGATTCTAAGGGTTTGCAGTTTTGGGTGATTTGGTGTTTCAATATTATATACCTAATGCAGGTTTAATTAATGCTGATTAATGCTGAGAAAAATGTTAAAGGAATATATTTTTCATAGCTCATCTTAATATGGCTTTGTTTTAGAATGTAACCGTTTGTTATTTCAAAATATGCTTGTTCACCTCAGCATCAGCATGCAGCCAAAATTGCTATTTTTTACTCTTAGTTTTTTGCAGCTTGActtttatgttttcatttatgttttggaaaaaaaaaattgttaattgCAAATGCTGAGGTTTAGCTTAAAATTTAATGATCACTAAAATGTTATTCTCACATGATCGAAAATAAAGTTGTCATAACAATTTCAATTCA

Function

GO:

id name namespace
GO:0005856 cytoskeleton cellular_component

KEGG:

id description
K10381 DSP; desmoplakin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157764 lncRNA downstream 65184 22670733 ~ 22674450 (-) True G117055
TU157760 lncRNA downstream 107366 22629896 ~ 22632268 (-) True G117052
XR_005640797.1 lncRNA downstream 533643 22181964 ~ 22205991 (-) True LOC120568857
TU157630 lncRNA downstream 538654 22195324 ~ 22200980 (-) True G116954
TU157587 lncRNA downstream 561100 22178293 ~ 22178534 (-) True G116922
TU157840 lncRNA upstream 49458 22807072 ~ 22809753 (-) True G117112
TU157848 lncRNA upstream 67759 22825373 ~ 22825583 (-) True G117117
TU157843 lncRNA upstream 75452 22833066 ~ 22834881 (-) True G117114
TU157851 lncRNA upstream 78441 22836055 ~ 22865958 (-) True G117119
TU157870 lncRNA upstream 202901 22960515 ~ 23110187 (-) True G117137
XM_039816311.1 mRNA downstream 1386 22703464 ~ 22738248 (-) True LOC120568657
XM_039816920.1 mRNA downstream 44959 22689074 ~ 22694675 (-) False LOC120569075
XM_039816919.1 mRNA downstream 44960 22689074 ~ 22694674 (-) True LOC120569075
XM_039815109.1 mRNA downstream 116756 22576333 ~ 22622878 (-) False LOC120567969
XM_039815108.1 mRNA downstream 136090 22576333 ~ 22603544 (-) True LOC120567969
XM_039814977.1 mRNA upstream 58352 22815966 ~ 22824647 (-) True LOC120567909
XM_039815743.1 mRNA upstream 414444 23172058 ~ 23177122 (-) True psma8
XM_039816776.1 mRNA upstream 555753 23313367 ~ 23317690 (-) True LOC120568995
XM_039817030.1 mRNA upstream 588104 23345718 ~ 23361580 (-) False LOC120569135
XM_039817031.1 mRNA upstream 588104 23345718 ~ 23354761 (-) False LOC120569135
TU157659 other downstream 471075 22263123 ~ 22268559 (-) True G116969
TU157655 other downstream 476136 22261998 ~ 22263498 (-) False G116969
TU157096 other downstream 1729065 21008049 ~ 21010569 (-) False higd1a
TU156767 other downstream 2943925 19793834 ~ 19795709 (-) False xcr1b.1
TU156578 other downstream 3274254 19464700 ~ 19465380 (-) True G116138
TU158039 other upstream 672752 23430366 ~ 23430992 (-) True G117259
XR_005640657.1 other upstream 711006 23468620 ~ 23491612 (-) False LOC120568062
unassigned_transcript_560 other upstream 1110338 23867952 ~ 23868025 (-) True trnai-aau_23
unassigned_transcript_562 other upstream 1111541 23869155 ~ 23869226 (-) True trnap-agg_8
XR_005640840.1 other upstream 1262748 24020362 ~ 24020438 (-) True LOC120569137

Expression Profile