RNA id: XM_039815356.1


Basic Information

Item Value
RNA id XM_039815356.1
length 1481
RNA type mRNA
GC content 0.49
exon number 7
gene id gtf2b
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 33520706 ~ 33532712 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTGAGCCTCATGGCTCCCTATACTCCAACAGACACGTGATCGGAAAAAGTTATAAGTAGAGGTGGTGCATTCAATTGTTTCTTTGACGGGCGGAGCAAAGGAATGATATGGCGTCGACAAGCCGCGGAGATGCCCTGGCCCTTCCTAGAGTTCAGTGTCCCAACCACCCTGAGGCCATACTGGTGGAGGACTACAGAGCAGGGGACATGATTTGTCCTGAATGCGGACTTGTAGTAGGTGACCGTGTAATCGACGTAGGCTCAGAGTGGAGGACGTTCTCCAATGAGAAAGCCCTCAAAGATCCATCCCGAGTGGGAGACGCCCAGAACCCGCTGCTCAACGGGGGCGACCTAACCACCATGATCAGCAAGGGAACTGGCGCCGCTAGCTTTGACGAATTCGGTAACTCCAAGTACCAGAACCGGAGGACCATGAGCAGCTCTGACCGGGCCATGCTCAACGCCTTTAAAGAAATCAGCACCATGGCAGATCGCATCAACCTGCCAAGGAACATCATaGACAGAACCAACAACCTATTCAAGCAGGTTTATGAACAGAAGAGCCTGAAGGGGCGAGCCAATGATGCCATCGCTTCGGCCTGTCTCTACATCGCCTGCAGACAAGAAGGTGTCCCAagaacatttaaagAGATCTGCGCCGTCTCCCGGATCTCCAAGAAGGAAATCGGCCGGTGCTTCAAGCTGATCCTGAAGGCGCTGGAGACCAGCGTGGACCTCATCACCACCGGAGACTTCATGTCCCGCTTCTGCTCCAACCTGGGCTTACCCAAACAGGTGCAGATGGCGGCCACCTTCATCGCCCGGAAGGCCGTGGAGCTGGACCTGGTGCCCGGCAGGAGCCCCATCTCAGTGGCTGCAGCAGCCATCTACATGGCCTCCCAGGCCTCTGCAGAGAAGAAGACACAGAAGGAAATCGGGGATATTGCCGGTGTTGCTGACGTTACGATCAGACAGTCCTACCGCCTCATCTACCCGCGCGCTGCAGAACTCTTCCCTCCAGACTTCAAATTCGACACACCCGTCGACAAGCTGCCCCAACTGTGAAGACGACGCTCCCTAAACAGTGACGATATTATTTCTGCTGTACTTTACAGGATTGTATACTTTCTTTGAAATCATATTTGTGTTGGATTTGGCAGATTTCTCTTGTCCCGCCTAAGACTTGTAGCCTTTTTGTCAAGGCGCTCTCACAGGAATAAAACGGACACATTCCAGTGCTTAAACAAACTGCTTGCAGACTGTacttacagtattttatttgagtgtgtgtgtatatatatactgtgtcaTGTATGTACGTCCAAGTGGGAAAATGTAATTGATGCTTGCAATTTTAGACTGGTTTCATACTGTATACATAAACCTTGTTTTTGTAGTCAAATGACCTGGTTCTATTTTGTTAGTTTgaattgtaagaaaaaaaaaagaaaaaaaaattcattaaagCATGGTAATCAGCT

Function

GO:

id name namespace
GO:0006352 DNA-templated transcription, initiation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0017025 TBP-class protein binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K03124 TFIIB, GTF2B, SUA7, tfb; transcription initiation factor TFIIB

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161496 lncRNA downstream 2550 33517176 ~ 33518156 (-) True G119896
TU161495 lncRNA downstream 4548 33515793 ~ 33516158 (-) True G119895
TU161481 lncRNA downstream 20753 33499634 ~ 33499953 (-) True G119881
TU161469 lncRNA downstream 86810 33421389 ~ 33433896 (-) True selenof
TU161461 lncRNA downstream 138708 33381754 ~ 33381998 (-) True G119861
TU161517 lncRNA upstream 22872 33555584 ~ 33556012 (-) True G119916
TU161584 lncRNA upstream 68258 33600970 ~ 33611387 (-) True G119973
TU161593 lncRNA upstream 103639 33636351 ~ 33684690 (-) True G119982
TU161596 lncRNA upstream 106900 33639612 ~ 33643648 (-) True G119983
TU161601 lncRNA upstream 112572 33645284 ~ 33646385 (-) False gfi1aa
XM_039815453.1 mRNA downstream 86781 33421691 ~ 33433925 (-) False selenof
XM_039814667.1 mRNA downstream 119383 33385763 ~ 33401323 (-) True LOC120567699
XM_039816369.1 mRNA downstream 140145 33366618 ~ 33380561 (-) False sept2
XM_039816367.1 mRNA downstream 140145 33366618 ~ 33380561 (-) True sept2
XM_039816368.1 mRNA downstream 140154 33366618 ~ 33380552 (-) False sept2
XM_039816905.1 mRNA upstream 28488 33561200 ~ 33577842 (-) False znf644a
XM_039816904.1 mRNA upstream 28488 33561200 ~ 33577842 (-) True znf644a
XM_039816913.1 mRNA upstream 78901 33611613 ~ 33622422 (-) False glmna
XM_039816911.1 mRNA upstream 78901 33611613 ~ 33622420 (-) True glmna
XM_039816914.1 mRNA upstream 78901 33611613 ~ 33622288 (-) False glmna
XR_005640728.1 other downstream 263770 33219724 ~ 33256936 (-) False LOC120568437
TU161146 other downstream 668309 32849719 ~ 32852397 (-) True G119631
TU161133 other downstream 688213 32828385 ~ 32832493 (-) False LOC120567697
TU161092 other downstream 755555 32762447 ~ 32765151 (-) False fcer1gl
TU161606 other upstream 121590 33654302 ~ 33659276 (-) True G119989
unassigned_transcript_565 other upstream 652304 34185016 ~ 34185088 (-) True trnak-cuu_2
TU161838 other upstream 695914 34228626 ~ 34229050 (-) True G120168
TU161906 other upstream 868111 34400823 ~ 34404013 (-) False G120230
unassigned_transcript_566 other upstream 1235729 34768441 ~ 34768514 (-) True trnan-guu_9

Expression Profile