RNA id: XM_039815360.1



Basic Information


Item Value
RNA id XM_039815360.1
length 2853
RNA type mRNA
GC content 0.46
exon number 9
gene id agap3
representative False

Chromosome Information


Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 21449437 ~ 21571620 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


CAGCATGCGGAGGAGGGCGCTGGGCAGGGACCACTTGGACCAAAGAGGAGTTAACGCTATTTCATTTCAGCGCAGAATCAACGCATTGAAGGCAGCGGACCAGGGCGCCGTGCTGAAGCCTAGCCCATTGTCTCCTTCAGACAGAGCAACTAAGGAAAACGGCTTTGACCAAAACAGCGGTGTAGCCCATCAAATAGTGTCCAAGTGGTAGGCATTACGGGTTTGTAAGCCACAGAAAAAAGGGCCCTGGACAGATCTGGCCAATTACGGAAAATGAATCACAGTCAAGTTTTGATAATATGAACAAGAGCCGCGTTTTGTTGCAATTGGCGACCAACTATTGATGCTTCTGCGCCGATCGTTTTCCACACCATCAATTCGCGCGGACTTCTTTTGTTCGCATCGCTTGAATCCCAAATTCTAGCCTGCCTATTTGTGTTGCCGTTGTGAAAACGAGTTAGGCGCtccaaaagacaacaaaaaaaagccgAGATGAATTTCCAGTCGAGCGTCCCAGTCTCGCAGCAGTCTCAGCCAGCCATGCCCACTCCAGGCACGGTCCCGGCGCCAGTCCCCGTCCCAGTTCCCCAGTCCATCCCGTCCCAGTTCGGATCCGGATCGTCTGCAGGCTCAGGGGCTGGCCAGTTCGGTTCGGGGACTGTTTCAGGCCAGACTGCCCAACCCGGCTCAGCGGGCTCGcagtttgttttgtccaactcAGCGGCCATCAGAGCAGAGATCCATCGGTTCGAGTCTGTCCATCCGAACATTTACGCAATCTACGACCTGATCGAGCGCATCGATGACCTGGCCCTGCAAAACCAGATCCGAGAGCATGTAATCTCTATTGAAGacTCTTTCGTCAACAGCCAGGAATGGACATTGAGTCGGTCAGTGCCAGAGCTGAAAGTGGGCATTGTGGGAAATCTGTCCAGTGGAAAGTCGGCTTTGGTCCACCGGTACTTGACGGGCACATATGTGCAGGAGGAGTCTCCTGAAGGTGGACGGTTCAAGAAAGAAATAGTGGTGGATGGACAGAGCTATCTACTTCTAATCAGAGATGAAGGAGGGCCTCCAGAATTGCAGTTTGCTGCCTGGGTGGATGCAGTGGTTTTCGTCTTTAGCCTGGAGGATGAGATCAGCTTCCAGACAGTCTACAATTACTTCTTGCGCCTATCCAGCTACAGGAACACAGCTGAGGTCCCCATGGTCCTCGTTGGAACACAAGATGCAATTAGTGCTGCCAACCCCAGAGTGATTGATGACTCGCGGGCCAGAAAGTTGTCAAACGACCTGAAGCGCTGCACATATTATGAGACCTGCTCCACCTATGGCCTGAATGTGGAGAGAGTCTTCCAGGATGTTGCCCAGAAGGTTGTGGCCATGAGGAAAAAGCAGCAGCTCTCTATTGGTCCATGCAAATCTCTCCCTAATTCTCCCAGCCACTCATCAGTCCCCGCTGCATCTATCCCCTCTGTTCACATTAACCAGGCGGCCAACGGTGGGGGTGCATTCAGCGACTACTCCTCCTCTGTTCCCTCCACCCCCAGCATAAGTCAGCGGGAGATGCGCATTGAGACCATCGCTGCCTCCAACACGCCCACGCCCATCCGCAAGCAGTCAAAGCGCCGCTCCAACATTTTCACAATTTGTGCTTCTGTTTCCAACCTTTCTTCAACAAAAAGGGCTTTCCAACTCCTTCCGAATTAGAAGAGCATGATGGTTTAAATAAAGAGTCCCCCTGCTTTGCTGATCATGATAGAGAGGAGATTATTTATTGAGGATTTACAGCTCGTTGCTGCTTTACCCTCGGTGCTTAATCGCATTCAGGGTAATGCATAGAACTTGCACTATAGGGAAACCATAGGACTTTGCGTCCAACGCAGCCTAAAGTCGAGTCGATTAGAGTGTTTGAGCACACTCAAAGTAGACTGTCAAATATCACGAAGTGAGACAGACTCGAGGGACTCTTCTGGAAATGCCCCGTCCACCCCCGCCCCcgccccacccccaccccccaactcTCATTCAGACATCCCACACAAAAACACGCTGTACAGTCAAGTCACTCTTGGAACTGTTATCCAGCCACCCAAAGGACACAACTTTTCCTTACATGACATCACACTGCCTTTTGCCATAAATGAGGACTCAAGGACTAGAGGTGccaagtttttttgttgttgattttcctACATTCATTTGGTTCGTTTTTATTTGATTCCTTCTTATTTTCCAGGGAGTACTGAATGGAATTGAAAATGTGGTATAAATGTATTATCAGAGGTATTTTAGATCAGAGTAATTTGGGTTATTTTATGAAGGCCTTCATAAAAATCAGGGTAGAGTGTCAGGGTGTTGAGGTATTACCGAGAGATATTATACTGAAAGTTGCCAACAAATGACTCTGGGTTGCACCGACTTGTATGAATGTAGTTAAacttaacttctttttttttcctatttatttatttattttaagttatttatttttgcacattcaattgtcttttattcatttatttcttttttttctcagtttagGTTTGGTACAGAGATTATGAACTCTTGCATAATCGCTTTTCTATCATGAACGGATTGACAAAAATATAGACTGCTGTATatcttgtattgtattttatttacaatGGTACTCTATAAAAAAGTACATACATATAAGGAGTATATGAAATAATGCCTTTATTGTTCATCCTATATTTTGTGGGAACTGCAATGTTTGGCTCAATCTGTTGAATATTTTGAAGTGAATTTGTGACTTGCTTTGTATGGTGTCTGTATAGAAGCTAAACAAgtcatcattaaaaaaaaataaaatgttggaaaaaagataAA

Function


GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU157296 lncRNA downstream 196058 21297415 ~ 21300082 (-) True G116692
TU157207 lncRNA downstream 286367 21208742 ~ 21209773 (-) True G116651
TU157135 lncRNA downstream 388422 21107514 ~ 21107718 (-) True G116582
TU157133 lncRNA downstream 434900 21058592 ~ 21061240 (-) True G116580
TU157105 lncRNA downstream 500600 20988324 ~ 20995540 (-) True tmie
TU157354 lncRNA upstream 21119 21592739 ~ 21595306 (-) True G116743
TU157375 lncRNA upstream 87059 21658679 ~ 21660467 (-) True G116758
TU157461 lncRNA upstream 239242 21810862 ~ 21811146 (-) True G116832
TU157550 lncRNA upstream 426174 21997794 ~ 22002858 (-) True G116893
TU157587 lncRNA upstream 606673 22178293 ~ 22178534 (-) True G116922
XM_039816081.1 mRNA downstream 173656 21303361 ~ 21322484 (-) False asic1c
XM_039816080.1 mRNA downstream 173656 21303361 ~ 21322484 (-) True asic1c
XM_039816562.1 mRNA downstream 211201 21273384 ~ 21284939 (-) True atg9b
XM_039816561.1 mRNA downstream 211201 21274741 ~ 21284939 (-) False atg9b
XM_039816564.1 mRNA downstream 227764 21213666 ~ 21268376 (-) True LOC120568841
XM_039816670.1 mRNA upstream 95119 21666739 ~ 21704105 (-) True sntg1
XM_039816673.1 mRNA upstream 195501 21767121 ~ 21783891 (-) True ube2v2
XM_039816674.1 mRNA upstream 195501 21767121 ~ 21783697 (-) False ube2v2
XM_039816752.1 mRNA upstream 213679 21785299 ~ 21794603 (-) True mcm4
XM_039816222.1 mRNA upstream 227336 21798956 ~ 21833615 (-) True spidr
TU157096 other downstream 485571 21008049 ~ 21010569 (-) False higd1a
TU156767 other downstream 1700431 19793834 ~ 19795709 (-) False xcr1b.1
TU156578 other downstream 2030760 19464700 ~ 19465380 (-) True G116138
TU156517 other downstream 2273414 19221791 ~ 19222726 (-) True G116084
TU156358 other downstream 2560663 18931974 ~ 18935477 (-) True LOC120568972
TU157655 other upstream 690378 22261998 ~ 22263498 (-) False G116969
TU157659 other upstream 691503 22263123 ~ 22268559 (-) True G116969
TU158039 other upstream 1858746 23430366 ~ 23430992 (-) True G117259
XR_005640657.1 other upstream 1897000 23468620 ~ 23491612 (-) False LOC120568062
unassigned_transcript_560 other upstream 2296332 23867952 ~ 23868025 (-) True trnai-aau_23

Expression Profile


XM_039815360.1 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 40.
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XM_039815360.1 Expression in each Bioproject

Bar chart with 8 bars.
XM_039815360.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 50.
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