RNA id: XM_039815388.1


Basic Information

Item Value
RNA id XM_039815388.1
length 1676
RNA type mRNA
GC content 0.41
exon number 7
gene id LOC120568119
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 28880645 ~ 28893212 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGTTGACTTTGTTTAACGTCTTTCCACAGATGGCGTCAGTCTTTCCGTTTGCTTTGTTGCTCTGTTTGTCCAGCGGACTGTTGGCTGCATACGGTCAAGCTTCCTGCCCTCCTGATTGGACTCAGTTTGGCTCTCGCTGTTTCAATTTCAACATCGGGCCAAAGACCTGGCCCGATGCAGAGACCTTCTGCCAGTCCGCTGGTGGGAATCTGGCTTCCATCCACTCAGATGCAGAACATAAATTTATCAGAAACTACATTAAGCAAGTGACCGGTTCATACAGACATTCCTGGATCGGAGGCACCGACGCAGTGAAGGAGTTTACGTGGTTGTGGACTGATGGATCCAACTTCGACTACACAAGCTGGAATGCGGGGGAGCCTAACAACCTCGGAGGGGAGAACTGTCTTGAGATGAACTGGGGTGGAGAAAACTGGAATGATGGGCATTGTACCAACCAGTTTTCTTTCGTGTGCTCCAAGAATCTAAAACTGGAACGACGCAGGCTGTACCTACCAGGCTTCTTCCGTGTGCTCCAAGAGCACATTCTTCAATGCGGGGCAGCCTGACAACGCCGGTGGACCGGAGAACTGTCTTGAGATGAACTTTGAAgCAAACTGGAACGACTTGGCTTGTACCAGCCAGGCTTCTTTCATGTGCTCCAagaacctgtgtgtgtaactctaCCACGCCATCATAATGCCTCTACAGCTCATCTATAATCTCTATCATTGATTCACTTTCAGTTTGCTGACAGTTGACTCACTTTCACTTGTTTATTATCTGAAGAGTTAGGGAACAGTTCACATTTGGGTTTAAAATTAGACAGAAACTGGCTCACTGAGCTGGACAAAAAACAATCAGTGATTGGATTTTTAATCTACagtaaataacacaaaatgaaatacagaaaacatttgaatactCACAAATCTTTTCCATTTTAGTTTACTGAATATTATCTGTTATAAACAGCGCACActcatctgataaaatattaaCACTAATTAGATTTCTCTCTGAGAGTTATTGTTCAGATCGATACAACTCTCATGTGTGCACGCCAAATATGAAGTTCCCTTGAGCAGattttagcttagcataaagactggaaacgggcagaaacagctagcttagcttagcataaagactagaaacGGGGAAACAggtaacttagcttagcataaagactagaaacagggggaaacaggtaacttagcttagcataaagactggaaacagggggaaacaggtaacttagcttagcataaagactggaaacggggggAAATAggtaacttagcttagcataaagactggaaacaggtggAAACCAGAAGCTTAGCTTAGTATGAAGAGTACTGGCTGGAAACAGATAGCCTGACTCCATCCAAAGGTAAAATTACCAGACATAAGTGGTGATGATCTTTTTATCCAAAATGTccagatagaaaataaaagtgtatatTTTGTCGGACCTTTCTGTGATACAAGAGGAGAATGCAACTGTAATCACACTTCataataactattaataattcaTATAGTCCACTGGTTTAATGAACTTGTTACTTTTTATTCTTAAAACTGATGTATTGTGTTCTTTATTCATCTGATTTCCTTTACTATATAATCAACTaaacattcaaaaataaaagacatattgTCACATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160009 lncRNA upstream 47032 28833736 ~ 28834022 (+) True G118717
TU159989 lncRNA upstream 137819 28742960 ~ 28743235 (+) True G118697
TU159988 lncRNA upstream 141953 28738890 ~ 28739101 (+) True G118696
TU159974 lncRNA upstream 202416 28678405 ~ 28678638 (+) True G118682
TU159969 lncRNA upstream 225163 28655658 ~ 28655891 (+) True G118677
XR_005640661.1 lncRNA downstream 21919 28915131 ~ 28918382 (+) True LOC120568121
TU160054 lncRNA downstream 48765 28941977 ~ 28942878 (+) True G118747
TU160060 lncRNA downstream 59469 28952681 ~ 28953465 (+) True G118752
TU160062 lncRNA downstream 59469 28952681 ~ 28953555 (+) False G118752
TU160077 lncRNA downstream 80989 28974201 ~ 28974588 (+) True G118762
XM_039815057.1 mRNA upstream 407509 28273667 ~ 28473545 (+) True clstn2a
XM_039815282.1 mRNA upstream 677325 28192915 ~ 28203729 (+) True pcyt1aa
XM_039815283.1 mRNA upstream 677325 28193538 ~ 28203729 (+) False pcyt1aa
XM_039815281.1 mRNA upstream 711084 28156801 ~ 28169970 (+) True LOC120568082
XM_039814618.1 mRNA upstream 776596 28086817 ~ 28104458 (+) True LOC120567659
XM_039815381.1 mRNA downstream 51334 28944546 ~ 28946983 (+) True LOC120568117
XM_039815380.1 mRNA downstream 51390 28944602 ~ 28946983 (+) False LOC120568117
XM_039814843.1 mRNA downstream 181805 29075017 ~ 29077414 (+) True LOC120567801
XM_039814647.1 mRNA downstream 277833 29171045 ~ 29173012 (+) True LOC120567679
XM_039814648.1 mRNA downstream 297881 29191093 ~ 29192158 (+) True LOC120567680
TU159791 other upstream 721465 28156973 ~ 28159589 (+) False LOC120568082
TU159680 other upstream 1271336 27602024 ~ 27609718 (+) False LOC120568838
TU159378 other upstream 1995024 26883559 ~ 26886030 (+) True G118234
TU159241 other upstream 2111143 26765492 ~ 26769911 (+) True G118149
TU159178 other upstream 2280982 26590830 ~ 26600072 (+) True prkab2
TU160295 other downstream 1075201 29968413 ~ 29969850 (+) False LOC120567689
TU160411 other downstream 1676183 30569395 ~ 30574881 (+) False LOC120568595
TU160502 other downstream 2278005 31171217 ~ 31196233 (+) True G119114
TU160516 other downstream 2305748 31198960 ~ 31200014 (+) False G119123
TU160672 other downstream 2566652 31459864 ~ 31460908 (+) True G119257

Expression Profile