RNA id: XM_039815398.1


Basic Information

Item Value
RNA id XM_039815398.1
length 4766
RNA type mRNA
GC content 0.46
exon number 23
gene id st18
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 21602052 ~ 21642496 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTAGTCAGCAAGTTGCATAGCTTCTGCATTCTGATTCTTCAAGCCTCTTTTGTATGAAGTTTAGCACAATGTTTTACACTGTGTTTGACCTGAATGGCATGCTGGAGaaaACAATGAAAGGAGCGGACAAAGCGATTGTGGCAAAGTCCTTTGGAAAATGGAAAAGCAGCTCTCTAAGGTCCAGGACCATGGAGAAGCCGGATGAGCTGTCCGAGGAGAGTAAGGAGAAGAGCCTTTCCAACTGCACCTGTGAAGCCCCCCAACTCGGCAAGAAACCAGTTGATAATGAATTACATGATCACCTCCTGAGAGATAACAAAGGGGAAAGCATTAACCAGGGTGGACAGTGCGGATCTGGCATCTTATCCTACAGAGAGCTCGGAAAACTACAATCAAAGatggaTTCTGAAGGTGAGGAGCAAACCGTGAACACATGTAACAGTAGTACAGGACTGGCCGACTGCACCTCTGAGATTCACAGCCCATATGGGTCCATGGCAAGGAAGAGGAGTGCTCAGGAAGGGGTGCAGGGCGCCCCCGTCAACAAGAGAAAGTCCCTGCTGATGAAGCCCCGCCACTACAGCCCCAGCGAGGCATGTGAAGAGGAGAGTGAGGACCTGGCACCGCCACAGGACAAAGAAGAGCTGAGGAACATTGACACTCCAGCAGATGGGAACTTAAGTACAATCAATGGAGTCAGCTACAACAATGGCTACCACGATGCAACAGCAAAGTCCAGTGATTCTCTCGGATGGTCAGAAGTTACATCTGATGACTCTCCACAGTGTGAGCCAGACACATCTGAACCTCTGATAGATGAAGATGATGAGGAGCTCCTTAATAATGAAAGAGATGACCAAAGTCAAGACAGAATGAGCGGTACATCATCGCCACAGAGTCCATACAAAGACATGAGAGAGGCGGAATGGGagcctctgtctctgtctgccaaGGTGAACGGCTCCaacctcagtccctccagaGCCTCGGAAGACCTTTCAGGCAGAAACGGCCACATGAAAGAAGAACCTCACTTAGAATTAGGTGGTCCGATGGGTAGGGCGAGTATTTTTCAGGGCGAGGCTCTAAGATACAGGCTGCTCCCCACAGAGGACAGTGATGGGGAGGCGGAAGTGGAGAGGCCACCTCAGCTGGACGCCTGGGCTCTGGGCCTCCACGAAAGAGGCCTGGAAATGGGCCGAGGGAGGGTGAACCTCAGCCTGTTGGAGCAGGCCATAGCTCTGCAGACAGAGCAAAGACAGGTCCTGCACCATGCCTACAGGGAAATGGACCGGTTCCTcatggagcagatgaccaatgaGAGAAGGCACCATAGGATGATGGACATGGACAGCAGACTCAACTATCATGGAGGAAAAGATTCTCCACGTACAGATAAAAAGGACATAAAGTGTCCAACTCCTGGCTGCGATGGCACTGGTCATGTCACCGGCCTGTACCCTCACCACAGGAGTTTGTCTGGGTGTCCTCATAAAGTCAGAGTTCCTCCAGAGATCCTGGCCATGCATGAGAACGTCCTCAAGTGCCCTACACCCGGGTGCACAGGAAGAGGCCATGTCAACAGCAACCGCAGCACCCACCGGAGTCTCTCAGGCTGCCCCATCGCTGCTGCAGTGAAAGTCTCCAAACCTCAGGACGAGAGCCTGAAATGCAGACAAACACCTGACCGCTCACCAAGAGCCATCGGCTTGATAAAGAAGTTTGAGATGAACCAGCTGAACTACAGGCTCTCCCATCCAGTAGCAGCCCTGCAAACGAGCTTCACAAAAGACATGGACAAGTACAGCAGAATCCGCTTTGATTATGCCAGCTTTGATGCACAGGTCTTCGGCAAACAGCCTCTGATGGGGACCAACCAGGACCAGGAAATGTCACATTTCCCTGATTCACCTCAGCAGTATCCTGGCTTCCTTGGTGCTCCAGGTGGCCGCTTGCCCACCTCTGGTCATCACAGCCCACCGAGTCAATTCAGAAAAGAAGACGGTCTCCAAGCCGCAGCAGCAACAGCCGCCATCCTCAACCTCTCCACTCGCTACCGGAAGAACATGGAGGCTGTCGCCGGCCGGCCCTTGGCAACCTCCACAAAGGACATGCTCATAGAGGTGGATGAAAATGGCACCCTGGACTTGAGTATGAAGAAGTGCAAGGAAAATGTAAAAGCCTCGACAAAAACACCTTTGGAAGACTCACTGTCCCCTTCAGAGTCCGCTGTGGCCAAAGGCGGGAGCGTGCTTGTCAGCCCCACCTTCTACCAGCCGCTGTGTGACAGAGACAGCTGGGAGAGCCCCATCCCTGTCAACTTCAGCAAAGCACACGTTTTACAGGACGCAGAGGAGGATTACGATCATGTCTCCTTGGAGGATCAACACTACCAAGGAGACGGCAGCATGATGAGCCCTAAAGCCAAGTTGCTATTACGAGATGCAAAGAAAGAGCTTTTGAGCTGTCCGACCCCAGGCTGTGACGGCAGTGGCCATGTGACGGGGAATTATGCATCACATCGAAGTGTGTCTGGATGTCCCCTGGCTGACAAAACACTCAAATCACTGATGGCAGCCAACTCTCAGGAACTAAAGTGCCCAACACCTGGTTGTGATGGATCTGGACATGTGACTGGGAACTATGCTTCGCACAGAAGCTTGTCAGGATGTCCACGTGCCAGAAAGGGAGGTTTGAAGCTCACACCAAACAAGGATGACAAAGATGAGCAAGAGCTTAAGTGTCCAGTAATGGGATGTGACGGACAGGGCCATATATCGGGAAAATACACATCCCATCGCAGCGCAGGCAGTTGTCCACTTGCTGCCAAAAGGCAGAAGGAGTCGTCCATCAACGGGCTGCCCTTTGCCTGGAAGGCCAATAAACAGGAACTGCCCCATTGTCCCTTGCCTGGCTGCAATGGCCTTGGACATGCCAATAATGTGTTTGCCACACACAGAAGCTTGTCGGGTTGCCCACTGAACGCACAGAGTATCAAGAAAAAGCACTCCGAAGAAGAGATGATGACCATCAAACTGAAAGCCAGCAGTGgtgttgaaaacaaagaagatatTCAACATTTGGATCATGAAATTAAGGAACTGAATGAATCCAACATGAAAATAGAAGCAGATATGATGCAACTTCAAACCCAGATATCGTCTATGGAATGTAACCTGAGGACAATTGAAGAGGAGAACAAGATGATCGAACAGCACAACGACAGCCTTCTGAAGGAGCTCGCTCGCCTTAGCCAAGCTCTCATTAACAGTCTAACAGACATTCAGCTGCCTCAAATGGGACCCATCAGCGAGCATAATTTTGAAGCCTATGTGAACACATTAACTGACATGTACAACAACTCGGAGCACGAATACTCTCCAGAGTGCAAGGCCCTCTTGGATAATATCAAACAGGCTATTAAGGGCATCCATGTCTAAGCTGTAGAGGCACCAAGAGGTTTCTTTGACTTGGGATAATGGCACTAGATAGCTCTGTTTGACTGAAGAGTGCTGGCTTGGCTGCATGTATAAGACAAGGTTTTTGGAAATGTGTTGGCATTTCCTGGTAAATACACTGCACTGAGAAAATGACCAGCCAGATTTGTAATGCTTTTACTGTTTCTGCATTCACTTGATATGTTTATCCTGGTGAGATTTTTACCCCCCTTGCACTTAATTATTTTGTATGGTTTGCTTGATTTTATTCTGTATGTGTTCATGTCATTGTTATATTATcgctatttattattatatttgttcATCAGTGTATTTATTTCCttaatttgtatttctttcttgAATTGTAAATGCTTAATATTTGAGAAATCTGTTGGACTTTCAGCACATTGTAAATTTAAATAGAAGCACATTCCAATTTCATGGCATACTTTCGCCATCTAATGTTGaaaaactttattaatattattattaaaccaTAAGTTGGATCTCCCTTAGAGGTAAAAACCTACCAAAACGACTAAGCATCAATATTTTTAAGCATTGCTTTTGCTTTCTTTATTGGAAACTGAATGTATGGTAAGACAAAGTGAacactgatataaaaaaaatgcaatgcaacTGTACTGtacctttttcttcttaacCAATAACAGCTGAATGCAACCAGGAAGTGACACTGAGCAAAAATGCAACATCATTCGCTGAACTGAATGACAGATTCTGCTTTGCATAGCGTGCTACAAGAAGAGTGcaacaaaaatcaaaaatcCACTTTGTCaagatgtctttttttaaaatatagataTTAAACTGCCTTCTCTGCACACACTTTTGGAGTGTGCATATAGTATGTGCCTAAATGTATATGAATCCATAAAAGTATACAAGTACTATGTTTTGTGGTAGGACAGTATTATGTGGATGGTGTCTAATTTATTATACAGTACAATTATTTTCATAGGAGGAAACGTTCCTGATGACTGTTTAAATACCACTGTCTCCGTAGCTGTAATCTCAGAGTCAGGTTTTGAAATAGCTCGACTGAGATTGAAAAGTCTGGTgtttattttaacttttgctAGCATGGAGAGGGGGGAAACGGAAGgagtgaattaaaaaaaaaaaacatctattcCTGTTTTATCTTAAACTGCTTGCAAGCCTTAACATTTCAACCAGTCTTACAGTTTGAATATTCCTGTAATGCTTGGGGCAGATTTGAATAGTAGCCATTTCAAAAACCGAGCTGACTACCACTAAAACATGCATTTTGGTTTCAATCAttaaatgcaacaacaaaaaaa

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157330 lncRNA upstream 101659 21454330 ~ 21500394 (+) True G116723
TU157251 lncRNA upstream 275790 21270751 ~ 21326263 (+) True G116657
TU157170 lncRNA upstream 357660 21243641 ~ 21244393 (+) True G116616
TU157136 lncRNA upstream 468041 21129608 ~ 21134012 (+) True G116583
TU157070 lncRNA upstream 571557 21021631 ~ 21030496 (+) True G116538
TU157416 lncRNA downstream 191970 21834466 ~ 21838752 (+) True G116794
TU157417 lncRNA downstream 191970 21834466 ~ 21836347 (+) False G116794
TU157508 lncRNA downstream 293023 21935519 ~ 22020278 (+) True G116857
XR_005640669.1 lncRNA downstream 382617 22025113 ~ 22036950 (+) False LOC120568180
XR_005640667.1 lncRNA downstream 382617 22025113 ~ 22035741 (+) True LOC120568180
XM_039815842.1 mRNA upstream 6816 21581280 ~ 21595237 (+) True rb1cc1
XM_039815843.1 mRNA upstream 6816 21581280 ~ 21595237 (+) False rb1cc1
XM_039814880.1 mRNA upstream 157928 21441760 ~ 21444125 (+) True gbx1
XM_039816084.1 mRNA upstream 162120 21434968 ~ 21439933 (+) False asb10
XM_039815402.1 mRNA downstream 6322 21648818 ~ 21660508 (+) True pcmtd1
XM_039815403.1 mRNA downstream 6322 21648818 ~ 21660508 (+) False pcmtd1
XM_039814536.1 mRNA downstream 64757 21707253 ~ 21709643 (+) True snai2
XM_039815194.1 mRNA downstream 154942 21797438 ~ 21798854 (+) True cebpd
XM_039815806.1 mRNA downstream 228457 21870953 ~ 21897183 (+) False LOC120568354
TU157037 other upstream 686765 20882706 ~ 20915288 (+) False LOC120568904
XR_005640618.1 other upstream 1226420 20373235 ~ 20375633 (+) True LOC120567833
unassigned_transcript_559 other upstream 2085108 19516853 ~ 19516945 (+) True trnar-ucu_13
TU156400 other upstream 2583327 19017058 ~ 19018726 (+) False LOC120568770
TU156233 other upstream 2927991 18672562 ~ 18674062 (+) False LOC120568691
XR_005640709.1 other downstream 228457 21870953 ~ 21897391 (+) False LOC120568354
TU157733 other downstream 965568 22608064 ~ 22612409 (+) False LOC120567968
XR_005640697.1 other downstream 999014 22641510 ~ 22678731 (+) False LOC120568311
TU158062 other downstream 2034583 23677079 ~ 23685804 (+) True LOC120567964
TU158130 other downstream 2208383 23850879 ~ 23855157 (+) True G117319

Expression Profile