RNA id: XM_039815402.1


Basic Information

Item Value
RNA id XM_039815402.1
length 1819
RNA type mRNA
GC content 0.46
exon number 6
gene id pcmtd1
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 21648818 ~ 21660508 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACCACGTGATGTGTGTTTACATCCTCTCAGCTGCTtcggtcttcttcttcttcacttcgACACAACGGCTCGCCGTTATTAGTTTAGCTACCTTTACATCCGAACCAGCTTAGCACAGTTTACTAGCAGTTTGCCTTTAAAAAGGAGGCTGCTAACGTCTGAAAGTCACTGACCGTCGCATTGCACAGAGCATCCAGTTACAAGGAGTAAGTAAATGCGACACGGCATTGTTGTCACTTGCTGCCTGGACATGACCGAAGTCTAAACTCTGACCCTCGAGGAGTCACAGCGGCAGCATCCTTTAGGTCAGCCGTTCATCTCCATGCCACTCTGAGGAGGAATCACTCATCCTGAGTACGTGTTTGGCCCTtgtttcctcttctcttttcaCCATGGGGGGAGCCGTGAGCGCTGGGGAGGACAATGACGACCTCATTGATAATCTGAAGGAGGCCCAGTATATTCGCACAGAAAAAGTGGAACAGGCTTTCCGAGCCATAGACCGTGGTGACTACTATCTGGACGGCTACAGGGACAGTGCCTACAAAGACTTGGCGTGGAAGCATGGAAACATCCACCTGTCTGCTCCGTGTATATACTCTGAGGTGATGGAGGCCCTCAAACTGCAGCCTGGACTTTCTTTCCTCAATCTGGGCAGTGGAACTGGTTACCTGAGCACAATGGTTGCCCTTATCATAGGGCCATTTGGTGTGAACCATGGAGTTGAGCTCCATAAGGACGTAGTTGAATATGCCAGAGAGAAACTGGATGATTTCATAAAGAATAGTGACAGCTTTGATAAGTTTGAGTTCTGTGAACCCGTCTTTGTGGTGGGGAATTGCCTTGAAATCTCAGCAGACAGTCACCAATACGATCGCATCTATTGTGGCGCAGGAGTGCAGAAAGACCATGAAAATTACATGAAAGTACTGCTCAAAATTGGAGGCATTCTGGTGATGCCTATAGAGGATCAGCTGACCCAGATAACCAGGACTGGTCAGTGCACATGGGAGAGTAAAAACATCTTGGCGGTGTCCTTTGCCCCCTTGGTCCAGCAGAGCAGAGCTGATGGAGAGAAGCCTGACGCTGTCCAGCTGCCCCCAGTGACTGTCCGCAGCCTTCAGGATCTGTCTCGGATCTACATACGCCGCACTCTCAGAAACCTGGCCAATGAGGATAGTCAAGGGAAGGGGATGGTGCAAAGAGTTCCCCAGAAGCGCAAACGCAGGCGCTGCCGACGGCGACGCATCAACACCTACGTTTTTGTAGGCAACCAGCTGATCCCTCAAATGGTGGAgagcgaggaggaggagcacGCTGAGGAAGAACACAaggaagtggaggaggaggaagaggaggaaagagaccTTGGCGACATTGAAATCCTCAAGCAAGTGAGCGTGTTGAGAGACCAAATAATGGCTTTACCGCTGCCTGAGTCACTTAAAGCATTTTTGCTGTATTACAGAGAGAAATGACTGATGAACTCGATGTCCACTCTTAATGGGTGCAGGGCCTGCTGAaatgctttttcctcttttctgtaCAAATGTAGCATTATTTCCATTAAATCTTGATGGCAAAACTGTAATGGAAAGATACGTCAGATAATATTGGATAATAATGTTATGATTGTCACGAGTTGTTAGTTTTTGTCGACAATTTTCTTTTGAgttgtatgtaaaaaaataaataaaaaaattaaataaaatgtaaaaagtatacCTAAAGGACATAGTTTCAGAAGCCCATTTTGAGATTCAGATTTCACAATTTCAGGACTTCTGCAGAAAtgtgcagataaaaaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0006479 protein methylation biological_process
GO:0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157330 lncRNA upstream 148424 21454330 ~ 21500394 (+) True G116723
TU157251 lncRNA upstream 322555 21270751 ~ 21326263 (+) True G116657
TU157170 lncRNA upstream 404425 21243641 ~ 21244393 (+) True G116616
TU157136 lncRNA upstream 514806 21129608 ~ 21134012 (+) True G116583
TU157070 lncRNA upstream 618322 21021631 ~ 21030496 (+) True G116538
TU157416 lncRNA downstream 173958 21834466 ~ 21838752 (+) True G116794
TU157417 lncRNA downstream 173958 21834466 ~ 21836347 (+) False G116794
TU157508 lncRNA downstream 275011 21935519 ~ 22020278 (+) True G116857
XR_005640669.1 lncRNA downstream 364605 22025113 ~ 22036950 (+) False LOC120568180
XR_005640667.1 lncRNA downstream 364605 22025113 ~ 22035741 (+) True LOC120568180
XM_039815399.1 mRNA upstream 6322 21602052 ~ 21642496 (+) False st18
XM_039815396.1 mRNA upstream 6322 21602053 ~ 21642496 (+) True st18
XM_039815398.1 mRNA upstream 6322 21602053 ~ 21642496 (+) False st18
XM_039815400.1 mRNA upstream 6322 21611033 ~ 21642496 (+) False st18
XM_039815401.1 mRNA upstream 6322 21611033 ~ 21642496 (+) False st18
XM_039814536.1 mRNA downstream 46745 21707253 ~ 21709643 (+) True snai2
XM_039815194.1 mRNA downstream 136930 21797438 ~ 21798854 (+) True cebpd
XM_039815806.1 mRNA downstream 210445 21870953 ~ 21897183 (+) False LOC120568354
XM_039815807.1 mRNA downstream 210445 21870953 ~ 21893132 (+) True LOC120568354
XM_039815805.1 mRNA downstream 210445 21870953 ~ 21891619 (+) False LOC120568354
TU157037 other upstream 733530 20882706 ~ 20915288 (+) False LOC120568904
XR_005640618.1 other upstream 1273185 20373235 ~ 20375633 (+) True LOC120567833
unassigned_transcript_559 other upstream 2131873 19516853 ~ 19516945 (+) True trnar-ucu_13
TU156400 other upstream 2630092 19017058 ~ 19018726 (+) False LOC120568770
TU156233 other upstream 2974756 18672562 ~ 18674062 (+) False LOC120568691
XR_005640709.1 other downstream 210445 21870953 ~ 21897391 (+) False LOC120568354
TU157733 other downstream 947556 22608064 ~ 22612409 (+) False LOC120567968
XR_005640697.1 other downstream 981002 22641510 ~ 22678731 (+) False LOC120568311
TU158062 other downstream 2016571 23677079 ~ 23685804 (+) True LOC120567964
TU158130 other downstream 2190371 23850879 ~ 23855157 (+) True G117319

Expression Profile