RNA id: XM_039815409.1


Basic Information

Item Value
RNA id XM_039815409.1
length 4017
RNA type mRNA
GC content 0.54
exon number 20
gene id rc3h1b
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 24965665 ~ 24980880 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cttcCACAGCTAGCTGTAACCGGCTAGCGAGTCTGTTGACGACTCGAGTTGACACCCTCCCCAAACCTCGGCAGCAGCTAAGCTGCACAGTCGACATGGCAAGAAAATATCGCAACAATTTCCTAAAGAAAGATGAAAATCTTCCAAGTCTTTTGGAATGATATTCATCACGCGATGTGATACAAAATCCACAATGTGTGAGGACATTTAAGAACAATTGAGTTCGGAAGAAAAATTCTTGATTCCAGTGGAATCTttcatatatattattattagtttttttctctgtgttaaAGCTTAAATACATTTACACCCACTCGTCCCATCAACATATAACCATGCCAGTGCAAGCACCACAATGGACAGAGTTCCTGCTGTGCCCCATCTGCACGCAGACATTTGAGGAGACTGTTCGCCGGCCCATCAGCTTGGGCTGTGGACATACTGTCTGCAAGATGTGCCTGAACAAGTTGCACCGTAAGGCCTGTCCCTTTGACCAGACAGCCATCAGCACAGACATCGAGCAGCTACCTGTCAACACAGCCCTGTTGCAGCTGGTGGGAGGCCAGGTTCCTAAGGCTCAGCCAGTTGCCTTGATTACCAGTCCAGAGGACTCGCAGCATTATGAGGAGGCCCGGCAGTGTGTGGAGGAGCTGGCCCTCTACCTCAAACCTCTCAGCAACACCAGAGGTGTGGGCCTGAGCAGCACGGCCCAGAGCATGCTGAGTCGACCTATGCAGAGGAAACTAGTAACTCTGGTCCACTGCCAGCTGGTTGAGGAGGAGGGTCGCGTTAGAGCCATGAGAGCTGCCCGCTCTCTGGGTGAGCGAACCGTCACCGAACTCATCTTGCAGCACCAGAATCCACAGCAGCTCTCCTCCAATCTGTGGGCCGCTGTGCGTGCACGAGGATGTCAGTTTCTTGGCCCAGCCATGCAGGAGGAAGCTCTAAAGTTGGTTCTTCTTGCTCTAGAGGATGGCTCTGCTCTGTCCAGGAAGGTGTTGGTTCTCTTTGTGGTCCAGAGACTTGAGCCACGCTTCCCGCAGGCTTCTAAGACTAGCATAGGCCATGTGGTGCAGCTCCTCTACAGGGCCTCCTGCTTCAAGGTGACCAAACGTGATGAAGATTCATCCCTGATGCAGCTGAAAGAGGAGTTCCGTACTTACGAGGCTCTGCGGCGCGAGCATGACTCTCAGATAGTTCAGATTGCCATGGAGGGTGGGCTGCGCATCGCACCTGACCAGTGGTCTTCTCTGTTATATGGAGATCAATCTCACAAGTCACACATGCAGTCTATCATAGATAAGCTGCAGACCCCAGCGTCTTTTGCTCAGAGTGTCCAGGAGCTGACGATTGCCCTGCAGAGGACCGGAGACCCAGCCAACCTCAACAGGCTGCGGCCCCACCTGGAACTACTGGCCAACATTGATCCCAGTCCTGATGCTCCCCCTCCCACATGGGAGCAGCTTGAGAAAGGGTTGGTAGCAGTGAAAACAGTGGTGCATGGCCTGGTGGACTTCATCCAGAACCACAGCAAGAAAGGAGCTGACCCTCAACAGCCTCCTCAGCACAGCAAGTATAAGACATACATGTGTCGTGACATGAAGCAGAAGGGAGGCTGTCCTCGAGGAGCCAGCTGCACCTTTGCTCATTCTCAGGAAGAACTGGAGAAGTATCGTAAAATGAATAAGCGTCTGGCAGCGCGCCTCCCTGGCTCAGGAGGGCTCATGCCAGATGAGGGCCTTCCTCTCGATGTAGCAGTCACCCGGAAGCCTTCACCCCTCACCAACGGTAGTGGTGGACACTCTTTGCCCCAGCTCATTGCCCGTGGCACCGACACAGTCCCATATGAACTGTTGCGTAAACccatgaagatggatggagggagTCCCAGTGCCCCAGGATCACCACCTGATGGCATGGACCCTGGGCTACCCAAACCTGGTATGCCTCTGCCACCTCATGCCATGGCCCACCAAAGGATGTCAGTGGACCACCTCTCTGGGGTGAAGCACATGCCTGTGGTAGCCAGAGGTTCACCGGTGTATACCCAGCCACCGCACCCTGAGATGTGCTATGACACCCGCCCACCACCTTCTGCTTCTCAGTATGACCCCCCACAATACCCCACAGGGTACCCCTACCAACAGCCACCACAGTATGTCCCCCGGGATTACATGCGTAACCCTCCTCCCCCCAGTGAGTCAGGACCCCCTTACCAGGACCCCTACCCTGGCTACGGCCCTCCAGAGCGCCCCTACCAGGCCCCTCACTCTGGTCCACCTTTCTCTTACCCTCACCCTCAACACCATGACCGAGGTCGCCACGGGACCTACACTGGCCCACCACCTCCCCCACAGCCTTACCCATCTCAGAGGGATGGCCTGGTCAGAATGAGTCCCGCACCTCTGGATATGCCCCCACCATCAGCAGGACAGGCTAACTCCCTTTATCACCAGGAGCCTAGTGCCCGTGATAGATACCCTCCAGATGGTTACTATACACAGAATGCCCAGCCTCCACCCATGAGGGCTTATGGCAGGGGGCCATCATATAGTGGTTCACAGCCCAGCCTGGACTACCTGCACAGACGTCGGCAGGAGCTGTTATCCCAGCTGGAGGAAAGGAAAGTCATCTCCCCTCCACCATTCGCTGCCTCCCCCGTTTCTCATCCGTTCCCCAGCGACTACCCTCCAGAGTATGGCGAGGAGAGCTCCAAAAACATGGTGAAATGCAGAGAGCCTGACTATGCAGGGCAGTACTCTCCCTGGTCTTGTGAAACCATTGGCTCCTACATTGGCACAAAGGATGCCAAACCCAAAGACGTTATGGTTCCTGGTACCATGGACATGATGAATGCGGAGGCTAAGGGTCTGAGGGAACCATCGCTGGAGGCTCCTCGGAGGGGTGCAGAAGTCAAAGACGATGACCCTATTATCCCATTTGGCCCCCAGCCTACTGTGTCACGCTTCGGTGCCATCTCCCGCACCTCAAAGATGGGCTACCAGACCACAGGCCCTGTGCAGGCTATGGCCTCCACGCCCCAGAACCCAAGCTCTAAACATATGGCCATGTCAGAATACACATATGGGAGCCATGGAGGATGGGGTGGAGCTTCATACCCCTCCCACCAGACTGCCTCCTCCTCTCAGGGACATTTCAGTGAGCGCCTTCCTATGGCAGCCCCAGACAGAGAACAGTTAAAGATTGAGCTGCAACAGGTCAACCAGCAGATCAACCAACAGACCCAAATGCGAAGCATGGAGGCTGCCAGTAACTCTTTACTGCTGCAGAGGGAGGCCAGTGCATTGGCAGGCCAGCCTGGGCAGCCCAGCCAGGGCCAGGTGTCAGTAGCGCAGCAGCAGGCCAAGTGGCCAGCAGGGGGAGCAAGTACAACAGCAGTCTCCAGTGAACAGCTAAGCATGGAGCTCCAccaggtggagagagagattggCAAGAGGACCCGTGAGATGGCTTTGCAGGAAAACCAAGTAGCCCATGATGTTCAGCAGTACAAGATGAAAACGGCAGAGAATGGACAACCAGAGCACAAAACTCAGCTGGAAGAAATCTCCCTGGCCCTTGGCGAGGTGTCAAATGGCTCCAGCAGTCTGCAAGAAAGTGCAGTGGGCGGGTCCATGCTGTCACTGACCAATAAGACGTCTGCAATGAGCCTGTGCTCTGATCCAGGTGCCACTGGGTCAGAGATGCAGAAGAATGGCGTCGTCCATTCCTGCTCTTAGGCAGtacacacttacacagacacatacatacacacacgcacacactcaagATGCTCAATTGAAAAGCATgcacaggcacacatacacccatTCTATTTAGAAGATGAGCAGTATCTGCCGTGATAtgaattttctttctttttgttctgTGAATGAgctttttttaatgactttccTTGCCTGGAAACCAGAGCATATGATAAcatttcttgtgtgtgtttaattattttctttttttttttgtactgggATTATAGATTAACAAGGCTCACAA

Function

GO: NA

KEGG:

id description
K15690 RC3H; RING finger and CCCH-type zinc finger domain-containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158548 lncRNA upstream 95578 24863027 ~ 24870087 (+) True selenot1a
TU158539 lncRNA upstream 127436 24837956 ~ 24838229 (+) True G117632
TU158430 lncRNA upstream 389663 24569578 ~ 24576002 (+) False LOC120568789
TU158431 lncRNA upstream 409008 24556419 ~ 24556657 (+) True G117547
XR_005640665.1 lncRNA upstream 626409 24337693 ~ 24339256 (+) True LOC120568139
TU158596 lncRNA downstream 6619 24987499 ~ 25043945 (+) False fgf12a
TU158635 lncRNA downstream 137351 25118231 ~ 25118502 (+) True G117704
XR_005640686.1 lncRNA downstream 144951 25125831 ~ 25130929 (+) True LOC120568228
TU158801 lncRNA downstream 768555 25749435 ~ 25749788 (+) False LOC120568894
TU158810 lncRNA downstream 795011 25775891 ~ 25793954 (+) False LOC120568895
XM_039815412.1 mRNA upstream 25786 24936959 ~ 24939879 (+) True LOC120568131
XM_039815724.1 mRNA upstream 54330 24907837 ~ 24911335 (+) True LOC120568308
XM_039816771.1 mRNA upstream 58719 24894555 ~ 24906946 (+) True zgc:153615
XM_039816772.1 mRNA upstream 58719 24896704 ~ 24906946 (+) False zgc:153615
XM_039815585.1 mRNA upstream 73226 24887761 ~ 24892439 (+) False LOC120568221
XM_039815415.1 mRNA downstream 11264 24992144 ~ 24996202 (+) True extl2
XM_039815421.1 mRNA downstream 25694 25006574 ~ 25044057 (+) False fgf12a
XM_039815420.1 mRNA downstream 33410 25014290 ~ 25044057 (+) False fgf12a
XM_039815417.1 mRNA downstream 39582 25020462 ~ 25044057 (+) True fgf12a
XM_039815418.1 mRNA downstream 39582 25020462 ~ 25044057 (+) False fgf12a
TU158583 other upstream 11418 24950568 ~ 24954247 (+) True G117664
TU158470 other upstream 289912 24667893 ~ 24675753 (+) False LOC120569045
TU158471 other upstream 289912 24673924 ~ 24675753 (+) False LOC120569045
XR_005640839.1 other upstream 910961 24049764 ~ 24054704 (+) False LOC120569114
XR_005640838.1 other upstream 910961 24049764 ~ 24054704 (+) False LOC120569114
TU158802 other downstream 774213 25755093 ~ 25755890 (+) False LOC120568894
TU158814 other downstream 795011 25775891 ~ 25793954 (+) False LOC120568895
TU158825 other downstream 849175 25830055 ~ 25830695 (+) True G117829
TU158989 other downstream 1234847 26215727 ~ 26217041 (+) True LOC120568800
TU159070 other downstream 1414546 26395426 ~ 26402078 (+) True G118011

Expression Profile