RNA id: XM_039815414.1


Basic Information

Item Value
RNA id XM_039815414.1
length 2997
RNA type mRNA
GC content 0.48
exon number 4
gene id tal1
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 24943660 ~ 24949323 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGCGCTTATCTCACTCGGCCACATTGCGGCCTGTGTTCCGCTCCCCATACTGAGGGAGCGCACTGGATGCGGCGAGGAATAactcagctacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgctgctcCACAactggcagaaaaaaaagaaaaacctcaGACATGGATGACCCACTCACAAAATGGCTCCACTTACACAGTAACATCAACAACACGGCTGGAACGGACGCAGCTGACTCGAGCGAGTGGTGACGGTATCAAAATGATGGAAAAACGGCAGCCGGAGCTTCGTCCAGGAAGTCCCGATTTAGAGTCCGGTCCTGGAAAGCGGGAGGACTCCTCCATCATCTCCAGACTGAATGGATgcaaggaggaagaggagccgaggagagaggagggggagagggagaggggagggagctTCAAGGGGGTTGAGGAGACGGATGACGCTCCTCTGCAGAACTCAGGCAACGGGACCAGcatcagcatcatcatcaaCGGCGTTGCCAAGGAAACTGCCTCTCACAACGCCCTTGACCTGAAAAGGGAAGTGCCGGTGATCGAGCTCTCCAGGAGGGACGCTATAAAAGCGCTGGAGCAGAGGACTGAAAGCCATTTGGTGCCGATCACGGAACTTCGCAGACCTCCACCGCTGCCGCTGCCGCCGCCGCAACGAGACGACGCTCGAATGGTCCAACTGAGCCCAAACGCGTTTCCTGTCCCGGCCCGGGCGATGCTCTACAACCTGGCGCAGCCTCTCGCCGCCATCAACAGTCTCGGAGGGGAGTCGGAGCAGTACAGCATGTACCCCAGCAACAGGGTAAAGCGCCGCCCGGCGCCTTATGAGGTTGAACTCGACGAGGCTGGCCAGCCAAAGATTGTACGTCGCATCTTCACTAACAGTCGTGAACGTTGGCGGCAGCAGAACGTAAACGGGGCATTTGCGGAGCTTCGCAAACTCATCCCCACTCACCCCCCAGACAAGAAGCTGAGCAAGAATGAGATCCTGCGGCTTGCTATGAAGTACATCAGCTTCCTCTCCAACCTCCTGGACGACCAGGACGGAGGGAGGAATGTTGGCAGCACAACTGATGGGGAAACAGGGCTGCTGGTTGGGGTCGGGGCCCACGAGGGGGGCCCTCAGGGTGGACCACATCAGGACACAGTAGTAAGCTTGGCCAGGGACGATCTTCTGGAGACAATGTCGCCAGGCTCCAGTTGTGGAAGCCTGCCTGATGGTGATGCCGAGGGCAGTCCTGAGAGCTTTATGGAGGACCAGGACTCGCCTCCAGCTCCAAGGACTCTAACAGCTTCACGGGGGCCCCCGCTGCATCTAGCTGCTAGAGATCTGAGGCGCAATGGCCGCCCTAGAGATGGCTCCAGTCGCCGATGATGCTGATGCCAATAGACCACGGACACAACCCCTGAGACTGAAAGAGAACAATGAGAGGGACTAAGATAGAGGTGGATATGCTCAGGACCCGTTAGCTTTGAGTCATCAGTGTAGGAAAGAGAATCAATCTCCACGTAGTGAGATAGTGGAGTACATTCCTGTCTCCACACTACACCTGAGGCAGCACTGATGAATAGCTTGGTTTGATTGGTGAGCGGTTGAATTTGATCCAACAAAAGACTTGTAAATTCTGCATGTCTCATGTCTTTGAATGACCTGCAGATTATAACTTTCCGTGGTTTAAAGGTCCAAAGACTGGATAttctaaaataatttaaaaaacacacaaaaaaagaaagaaagaaagatcaagcaaacaaaacaagacaaaccAGACAAAAtatcaatcaagaaaaacttaaCAAAGATGTGTAATATTGAAATTTGGACCAATGCTTCACTAGCGATTTCAATATGGTGCGTAGGTCCAATGTGCTTGCAGAGTGCTGCAAGTAAATGGCACTAAAACATCAATGAATAAACCCTGGAGATTTATGCCCATCAAATTTAATGTGTTagaaaaatgacacaaaagTAAGTTTGCCTCATTTGGAGGCCTTAAATGAACCGACTGGACTCCATTGTACCCATGCAGTTACGTATGTATTGTAAATAGCATTATAATTCCACTGCACAATGTAACAACAGTGACTCGAGTTCAAGTCATGTGGTTTAAGATGTACTGTAGTGTGTTTGTCAATGGGTTTACTAGCAAAATGGTCTTTTGGGAGACATGACATGAGGAAAGAGGAATGAAGAGGCGAGATGGACTCAAAATGTAAAGCGAGCAACTGAACGTAGTACATCAAATGTGGTACCATTTACTTCTGTTACACTTTGGTGGTGAGAAAACCACACCAAATACGGCAACAGACAGTTAAACAATTTCACTGCCGGGAATGAATATATCTATTTGAAATTTGCTGTGGAGGTACAAGACATGCAGTGTTTCTTAAAGTGTACAAAATACATGAGTCATATCATGAAATGACTCATGCAGTCCTTTTGATATGaatgtttcagtgttttttttaaactgtaatgcAGTTGTAGTTTAGTAAGGTACACAAATAAATCCCTTCATTGCCGCATTtcccacgcacgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagtgttaatATCATAACAACACCAGCAGTTTTCTGATTAATACAGTTACGTATTGCTCACTTGTGGTTGGTTATTCTGCTTTTTCAGCAGGACCTAGTAGCCTATATTGGTACCTTTGGTAACTATGGTATTTTATGAATTGCAGTAAAGGGACATTGTACGTTTGGTAATGACATATTTGTTGTATGATAGCTGTATCTATGAATATATCCAATGTTAAATCAATGAATTTTATACAAAACTCCTGAATAAAACACACAGAGGAAAAGCCTTGTATTTGATCTCA

Function

GO:

id name namespace
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158661 lncRNA downstream 51201 24876086 ~ 24892459 (-) False G117718
TU158662 lncRNA downstream 51201 24876086 ~ 24892459 (-) True G117718
TU158664 lncRNA downstream 51201 24876086 ~ 24892459 (-) False G117718
TU158657 lncRNA downstream 75229 24863009 ~ 24868431 (-) True G117716
TU158522 lncRNA downstream 146404 24787583 ~ 24797256 (-) True G117616
XR_005640664.1 lncRNA upstream 74087 25023401 ~ 25048014 (-) True LOC120568137
TU158767 lncRNA upstream 332094 25281408 ~ 25335213 (-) True G117786
TU158772 lncRNA upstream 400912 25350226 ~ 25353750 (-) True G117788
TU158773 lncRNA upstream 400912 25350226 ~ 25373646 (-) False G117788
TU158798 lncRNA upstream 643729 25593043 ~ 25593585 (-) True G117812
XM_039815725.1 mRNA downstream 9847 24924580 ~ 24933813 (-) True ppm1la
XM_039815726.1 mRNA downstream 22271 24920430 ~ 24921389 (-) True arl14
XM_039815586.1 mRNA downstream 68695 24870002 ~ 24874965 (-) True LOC120568222
XM_039816662.1 mRNA downstream 299071 24582892 ~ 24644589 (-) False tnn
XM_039815408.1 mRNA upstream 1184 24950498 ~ 24964964 (-) False si:ch211-13f8.1
XM_039815407.1 mRNA upstream 1184 24950498 ~ 24964964 (-) True si:ch211-13f8.1
XM_039815416.1 mRNA upstream 38275 24987589 ~ 24992610 (-) True zgc:110366
XM_039815422.1 mRNA upstream 48067 24997381 ~ 25001782 (-) True LOC120568136
XM_039815405.1 mRNA upstream 105911 25055225 ~ 25085349 (-) True LOC120568128
TU158687 other downstream 20342 24922203 ~ 24923318 (-) True G117732
TU158445 other downstream 407164 24499380 ~ 24536496 (-) True G117560
XR_005640841.1 other downstream 922159 24021439 ~ 24021501 (-) True LOC120569138
XR_005640840.1 other downstream 923222 24020362 ~ 24020438 (-) True LOC120569137
unassigned_transcript_562 other downstream 1074434 23869155 ~ 23869226 (-) True trnap-agg_8
TU159298 other upstream 1712307 26661621 ~ 26665952 (-) True G118175
XR_005640672.1 other upstream 1870524 26819838 ~ 26824570 (-) False cirbpa
TU159721 other upstream 2721662 27670976 ~ 27675360 (-) False LOC120568986
TU159739 other upstream 2764153 27713467 ~ 27714390 (-) False G118524
TU159738 other upstream 2768237 27717551 ~ 27718759 (-) True G118524

Expression Profile